BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47960.1
Length=2157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323400 jgi|Araly1|323400|fgenesh1_pm.C_scaffold_5000944 2981 0.0
Ahg496450 jgi|Araly1|496450|fgenesh2_kg.8__2266__AT5G62680.1 1146 0.0
Ahg887958 jgi|Araly1|887958|Al_scaffold_0303_1 532 3e-150
> Ahg323400 jgi|Araly1|323400|fgenesh1_pm.C_scaffold_5000944
Length=1935
Score = 2981 bits (1614), Expect = 0.0
Identities = 1839/1942 (95%), Gaps = 38/1942 (2%)
Strand=Plus/Plus
Query 63 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAATCATAACAACAAC 122
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAA-C--AACAACAAC 57
Query 123 AACACCAATCATTACACACAGGTTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 182
| | |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 58 -A-A-CAATAATTACACACAGATTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 114
Query 183 TCTACTACGAC---G---A-CTA--AC-AC--CGAT----GTGG-TC-GAT--TCT---T 219
|| || ||| | | | ||| | | |||| |||| || ||| | | |
Sbjct 115 TCAACGACGGCGGTGAACACCTACTCCGCCGTCGATGGCGGTGGTTCTGATGGTGTGACT 174
Query 220 TCG-A-G--GA--A-GAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 272
||| | | || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCGAAGGTCGACGACGAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 234
Query 273 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 294
Query 333 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 354
Query 393 TTTAGTGGTACAATCAATTTCGGGACTTTTATTGCTGCCTTTCTTTGCGACACTTACTTT 452
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 TTTAGTGGTACAATCAACTTCGGGACTTTTATTGCTGCTTTTCTTTGCGACACTTACTTT 414
Query 453 GGTCGCTACAAGACTCTCAGTGTCGCTGTCATCGCTTGTTTTCTGGGATCGTTTGTGATA 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GGTCGCTACAAGACTCTCAGTGTCGCTGTCATCGCTTGTTTTCTGGGATCGTTTGTGATA 474
Query 513 CTACTTACTGCTGCAATTCCGTCGTTGCACCCCGTTGCTTGCGGAAACAAAATCTCGTGC 572
||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 475 CTACTGACTGCTGCAGTTCCGTCATTGCACCCCGTTGCTTGCGGAAACAAAAGCTCGTGC 534
Query 573 GAAGGGCCAAGTGTGGGACAGATACTGTTTCTGCTCATGGGTTTAGGCTTTCTTGTGGTA 632
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 535 GAAGGGCCGAGTGTGGGACAGATACTGTTTCTGCTGATGGGTTTAGGGTTTCTTGTGGTA 594
Query 633 GGCGCTGGTGGTATCAGACCGTGTAATTTAGCGTTTGGTGCTGATCAGTTCAACCCCAAA 692
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGTGCGGGTGGTATCAGACCATGTAATTTAGCGTTTGGTGCTGATCAGTTCAACCCCAAA 654
Query 693 TCCGAATCAGGAAAGAAAGGGATCAACAGTTTCTTCAACTGGTATTTCTTCACTTTCACG 752
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 ACCGAATCTGGAAAGAAAGGGATCAACAGTTTCTTCAACTGGTATTTCTTCACTTTTACG 714
Query 753 TTCGCGCAGATCATCTCGCTCACAGCAGTTGTGTATATCCAGTCAAATGTGAGTTGGACA 812
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 715 TTCGCGCAGATCATCTCGCTCACGGCAGTTGTGTATATCCAGTCAAATGTGAGTTGGACG 774
Query 813 ATCGGTTTGATCATTCCGGTGGCTCTTATGTTCTTGGCGTGTGTGATTTTCTTTGCTGGC 872
||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 775 ATCGGTTTGATCATTCCAGTGTCTCTTATGTTCTTGGCGTGTGTGATCTTCTTTGCTGGC 834
Query 873 GATAGATTGTATGTAAAAGTGAAAGCCTCGGGTAGTCCATTGGCTGGTATTGCTCGTGTT 932
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 835 GATAAATTGTATGTAAAAGTGAAAGCCTCGGGTAGTCCATTGGCTGGTATCGCTCGTGTT 894
Query 933 ATAGCAGCCGCGATCAAGAAACGAGGTTTGAAGCCGGTTAAGCAGCCTTGGGTCAATCTT 992
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 ATAGCAGCCGCAATCAAGAAACGAGGATTGAAGCCGGTTAAGCAGCCTTGGGTCAATCTT 954
Query 993 TACAACCATATCCCGTCTAACTATGCAAATACTACTCTAAAATACACCGACCAGTTCAGA 1052
|||||||| || ||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 955 TACAACCACATTCCGCCTAACTATGCTAATACTACTCTAAAATACACTGACCAGTTCAGA 1014
Query 1053 TTTCTAGACAAAGCAGCAATTATGACCCCCGAGGAGAAGTTGAACTCCGATGGAACGGCT 1112
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1015 TTTCTAGACAAAGCAGCAATTATGACCCCCGAGGAGAAGTTGAACTCTGATGGAGCGGCT 1074
Query 1113 TCCGATCCATGGAAACTATGCACGTTGCAGCAAGTGGAAGAAGTGAAATGCATTGTAAGA 1172
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1075 TCCGATCCATGGAAACTATGCACGTTGCAGCAAGTGGAAGAAGTGAAATGCATTGTTAGA 1134
Query 1173 GTGATTCCAATCTGGTTTGCATCCACGATATACTACCTTGCAATAACTATACAAATGACT 1232
|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1135 GTGATTCCAATCTGGTTTGCTTCCACGATTTACTACCTTGCAATAACGATACAAATGACT 1194
Query 1233 TATCCGGTCTTCCAAGCGCTCCAGAGCGACCGACGATTAGGTTCTGGTGGCTTCAGGATT 1292
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TATCCGGTCTTCCAAGCGATCCAGAGCGACCGACGATTAGGTTCTGGTGGCTTCAGGATT 1254
Query 1293 CCTGCGGCCACCTATGTAGTGTTCTTGATGACTGGCATGACAGTTTTCATCATATTCTAC 1352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CCTGCGGCCACCTATGTAGTGTTCTTGATGACTGGCATGACAGTTTTCATCATATTCTAT 1314
Query 1353 GACCGTGTACTTGTCCCGTCGCTCAGAAGAGTGACCGGGTTAGAAACCGGTATATCACTC 1412
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1315 GACCGTGTACTTGTCCCGTCGCTCAGAAGAGTGACCGGGATAGAAACCGGTATATCACTC 1374
Query 1413 TTACAAAGAATCGGAGCTGGGTTTACATTTGCGATAATGAGTTTATTAGTTTCCGGGTTT 1472
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1375 TTACAAAGAATCGGAGCAGGGTTTACATTTGCGATACTGAGTTTATTAGTTTCCGGGTTT 1434
Query 1473 ATAGAGGAAAGGAGAAGAAACTTTGCATTGACCAAACCGACACTCGGGATGGCGCCTCGG 1532
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1435 ATAGAGGAAAGGAGAAGAACCTTTGCACTGACCAAACCGACACTCGGGATGGCGCCTCGG 1494
Query 1533 ACAGGAGAAATCTCATCAATGTCAGCGTTGTGGCTGATTCCGCAGCTTACACTTGCAGGC 1592
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1495 ACAGGAGAAATCTCCTCAATGTCAGCGTTATGGCTGATTCCGCAGCTCACACTTGCAGGC 1554
Query 1593 ATAGCAGAAGCTTTTGCTGCCATTGGACAAATGGAGTTTTACTACAAGCAGTTTCCTGAA 1652
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTAGCCGAAGCTTTTGCTGCCATTGGACAAATGGAGTTTTACTACAAGCAGTTTCCTGAA 1614
Query 1653 AACATGAAGAGCTTCGCGGGTTCTATCTTTTATGTCGGTGCAGGGGTTTCGAGCTACCTC 1712
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 AACATGAAGAGCTTCGCAGGTTCTATCTTTTATGTCGGTGCAGGGGTTTCGAGCTACCTC 1674
Query 1713 GCTAGCTTCTTGATATCAACTGTTCATCGAACAACCGCGCATTCACCTTCAGGGAATTGG 1772
|||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1675 GCTAGCTTCTTGATCTCAACTGTTCATCGATCAACTGCGCATTCACCTTCAGGGAATTGG 1734
Query 1773 TTAGCTGAGGATCTGAACAAAGCGAAATTGGATTACTTCTACTTCATGCTCACAGGACTC 1832
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TTAGCTGAGGATCTGAACGAAGCGAAATTGGATTACTTCTACTTCATGCTCACAGGACTC 1794
Query 1833 ATGGTTGTTAACATGGCTTACTTCTTGTTGATGGCTAGATGGTATAGATACAAAGGAGGT 1892
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 1795 ATGGTTGTTAACATGGCTTACTTCTTGTTGATGGCGAAATGGTATAGATACAAAGGCGGT 1854
Query 1893 AATGATGAAGA-CATCACTGAGATTGAGACCAATGAAGAAGAAACCAAGCAACAGCAGCT 1951
||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1855 AATGATGAA-ATCATCACTGAGATTGAGACCAACGAAGAAGAGACCAAGCAACAGCAGCT 1913
Query 1952 ACAAGACAAGAACTCTGTCTGA 1973
||||||||||||||||||||||
Sbjct 1914 ACAAGACAAGAACTCTGTCTGA 1935
> Ahg496450 jgi|Araly1|496450|fgenesh2_kg.8__2266__AT5G62680.1
Length=2242
Score = 1146 bits (620), Expect = 0.0
Identities = 1365/1716 (80%), Gaps = 86/1716 (5%)
Strand=Plus/Plus
Query 234 AGAA-AAA-TCGTTTATAGAGGATGGAAAGTCATGCCTTTTATCATTGGTAATGAGACAT 291
|||| ||| ||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||
Sbjct 229 AGAAGAAAGTCGTTTATAGAGGCTGGAAAGTCATGCCCTTTATTATTGGAAATGAAACAT 288
Query 292 TTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTTGTGTACCTAACTTCTGTAT 351
||||||||||||||||||| |||||| |||| |||||||| || || ||||| | || |
Sbjct 289 TTGAGAAGCTTGGGATCATTGGGACACTATCGAACCTTCTGGTTTATTTAACTGCAGTCT 348
Query 352 TCAACCTTAAGAGCTA-CACAGCTGCAACTATCATCAATGCCTTTAGTGGTACAATCAAT 410
||||||| ||||| || ||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct 349 TCAACCTGAAGAG-TATTACAGCTGCAACCATCATTAATGCCTTTAGTGGCACAATTAAT 407
Query 411 TTCGGGACTTTTATTGCTGCCTTT-CTTTGCGACACTTACTTTGGTCGCTACAAGACTCT 469
||||| ||||| | |||| |||| || || ||||||||||| ||||| |||||||||||
Sbjct 408 TTCGGAACTTTCGTAGCTG-CTTTCCTCTGTGACACTTACTTCGGTCGATACAAGACTCT 466
Query 470 CAGTGTCGCTGTCATCGCTTGTTTTCTGGGATCGTTTGTGATACTACTT-ACTGCTGCAA 528
||||| || |||||||| |||||||| |||||||||||||||||| || |||||||||
Sbjct 467 AAGTGTTGCGGTCATCGCCTGTTTTCTTGGATCGTTTGTGATACTA-TTGACTGCTGCAG 525
Query 529 TTCCGTC-GTTGCACCCCGTTGCTTGCGGAAACAAAATC---TCG--TGCG-AA-GGGCC 580
| || | |||| || | | | || || |||| | | | || | || |||||
Sbjct 526 TGCC-ACAACTGCATCCAGCTCCATGTGG-AACAGCGGCGGATAGTATGTGTAACGGGCC 583
Query 581 AAGTGTG-GGACAGATA-CTGTTTCTGCTCATGGGTTTAGGCTTTCTTGTGGTAGGCGCT 638
||||| | || |||||| | |||||| || |||||| | || || ||||| || || ||
Sbjct 584 AAGTG-GAGGCCAGATAGC-GTTTCTACTGATGGGTCTCGGGTTCCTTGTAGTGGGAGCG 641
Query 639 GGTGGTATCAGACCGTGTAATTTAGCGTTTGGTGCTGATCAGTTCAACCCCAAATCCGAA 698
|| || || ||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||
Sbjct 642 GGAGGGATTAGACCGTGTAATTTAGCTTTTGGGGCTGATCAGTTTAACCCAAAAAGCGAA 701
Query 699 TCA-GGAAAGAAAGGGATCAACAGTTTCTTCAACTGGTATTTCTTCACTTTCACGTTCGC 757
||| ||||| | |||||| |||||||||| || ||||||||||| || ||||| |||||
Sbjct 702 TCAGGGAAA-AGAGGGATTGACAGTTTCTTTAATTGGTATTTCTTTACCTTCACTTTCGC 760
Query 758 GCAGATCATCTCGCTCACAGC-AGTTGTGTATATCCAGTCAAATGTGAGTTGGACAATCG 816
||||||| | ||||| || | ||| ||||| | ||||| ||||| |||||||| || |
Sbjct 761 GCAGATCTTGTCGCTGAC-TCTAGTCGTGTACGTTCAGTCTAATGTCAGTTGGACGATTG 819
Query 817 GTTTGATCATTCCGGTGGCTCTTATGTTCTTGGCGTG-TGTGATTTTCTTTGCTGGCGAT 875
|| | | ||| |||| | ||||||||||||||| || | ||||||||||||| ||||||
Sbjct 820 GTCTAACCATCCCGGCCGTTCTTATGTTCTTGGCCTGCT-TGATTTTCTTTGCGGGCGAT 878
Query 876 -AGATTGTATGT-AAAAGTGAAAGCCTCGGGTAGTCCATTGGCTGGTATTGCTCGTGTTA 933
|| |||||||| |||| | ||||||||||||||||||||||| ||||| |||| ||||
Sbjct 879 AAG-TTGTATGTGAAAA-TCAAAGCCTCGGGTAGTCCATTGGCCGGTATAGCTCAAGTTA 936
Query 934 TAGCAGCCGCGATCAAGAAACGAGGTTTGAAGCCGGTTAAGCAGCCTTGGGTCAATCTTT 993
|||| | |||||||||||||| || || ||||| | || ||||||||| | || ||||
Sbjct 937 TAGCGGTTGCGATCAAGAAACGCGGATTAAAGCCCGCGAAACAGCCTTGGCTTAACCTTT 996
Query 994 ACAACCA-TATCCCGTCTAACTATGCAAA-TACTACTCTAAAATACACCGACCAGTTCAG 1051
|||| | || ||| | || || ||||| | | | || |||||||| ||||| |||||
Sbjct 997 ACAATTACTA-CCCACCAAAATACGCAAACT-CCAAGCTCAAATACACTGACCAATTCAG 1054
Query 1052 ATTTCTAGACAAAGCAGCAATTATGACCCCCGAGGAGAAGTTG-AACTCCGATGG-AACG 1109
|||||| || ||||| || || ||||| ||||| || ||| || | | | ||||| || |
Sbjct 1055 ATTTCTCGATAAAGCCGCGATCATGACTCCCGAAGATAAGCTGCAGC-CAGATGGTAA-G 1112
Query 1110 GCTTCCGATCCATGGAAACTATGCACGTTGCAGCAAGTGGAAGAAGTGAAATGCATTGTA 1169
|| | ||||| ||||| || || || |||| ||||| ||||||||||| ||||| ||
Sbjct 1113 CCTGCTGATCCGTGGAAGCTCTGTACAATGCAACAAGTTGAAGAAGTGAAGTGCATCGTG 1172
Query 1170 AGAGTGATTCCAATCTGGTTTGCATCCA-CGATATACTACCTT-GCAATAACT-ATACAA 1226
||||| |||| || |||||||||| || | || ||||| ||| | || ||| | ||||
Sbjct 1173 AGAGTTCTTCCTATATGGTTTGCAT-CATCAATTTACTA-CTTAACCATTACTCA-ACAA 1229
Query 1227 ATGACTTATCCGGTCTTCCAAGCGCTCCAGAGCGACCGACGATTAGGTTCTGGTGGCTTC 1286
||||||||||| ||||||||||| |||||||||||||| || ||||| || || || ||
Sbjct 1230 ATGACTTATCCCGTCTTCCAAGCCCTCCAGAGCGACCGTCGCTTAGGCTCAGGAGGATT- 1288
Query 1287 AG-GATTCCTGCGGCCACCTATGTAGTGTTCTTGATGACTGGCATGACAGTTTTCATCAT 1345
| ||||||||| |||||||| || || ||||||||||| || ||||||||||||||| |
Sbjct 1289 TGTGATTCCTGCAGCCACCTACGTGGTTTTCTTGATGACGGGAATGACAGTTTTCATCGT 1348
Query 1346 ATTCTACGACCGTGTACTTGTCCCGTCGC-TCAGAAGAGTGACCGGGT-TAGAAACCGGT 1403
| | ||||||||||||||||| || | | | |||||| | | | ||| |||| |||||
Sbjct 1349 AGTATACGACCGTGTACTTGTGCCAAC-CATGAGAAGAATTA-CTGGTCTAGACACCGGG 1406
Query 1404 ATATCACTCTTACAAAGAATCGGAGCTGG-GTTTACATTTGCGATAATG--AGTTTATTA 1460
||| | ||||| || ||||||||| |||| ||| | || || || | || || ||
Sbjct 1407 ATAACGCTCTTGCAGAGAATCGGAACTGGCATTTTC--TT-CGCTACCGCAAGCCTAGTA 1463
Query 1461 GTTTC-CGGG-TTTATAGAGGAAAGGAGAAGAAAC-TTTGCAT-TGACCAAACCGACACT 1516
| || |||| ||| | ||||||||||| || ||| || || | |||| |||||||||||
Sbjct 1464 G--TCGCGGGATTTGTCGAGGAAAGGAGGAG-AACATTCGC-TCTGACTAAACCGACACT 1519
Query 1517 CGGGATGGCGCCTCGGACA-GGAGAAATCTCATCAATGTCAGCGT-TGTGGCTGATTCCG 1574
||| |||||||| | || | ||||||||||| ||||||||||| | ||||||||||||||
Sbjct 1520 CGGTATGGCGCCAC-GAAAGGGAGAAATCTCCTCAATGTCAGC-TATGTGGCTGATTCCG 1577
Query 1575 CAGCT-TACACTTGCAGGCATAGCAGAAGCTTTTGCTGCCATTGGACAAATGGAGTTTTA 1633
||||| | |||| || || |||| || || ||||| || ||||||||||||||||||||
Sbjct 1578 CAGCTCT-CACTGGCGGGTGTAGCCGAGGCATTTGCAGCGATTGGACAAATGGAGTTTTA 1636
Query 1634 CTACAAGCAGTTTCCTGAAAACATGAAGAGCTTCGCGGGTTCTATCTTTTATGTCGGTGC 1693
||||||||||||||| |||||||||| ||| |||||||| || |||||||| || || |
Sbjct 1637 CTACAAGCAGTTTCCCGAAAACATGAGGAGTTTCGCGGGATCCATCTTTTACGTAGGAGG 1696
Query 1694 AGGGGTTTCGAGCTACCTCGCTAGCTTCTTGATAT-CAACTGTTCATC-GAACAACCGC- 1750
||| |||||||| ||||||| |||||||||||| | |||| ||||| | | | || ||
Sbjct 1697 AGGAGTTTCGAGTTACCTCGGTAGCTTCTTGAT-TGCAACAGTTCA-CAGGATGAC-GCA 1753
Query 1751 GCATTCACCTTCAGGG--AATTGGTTAGCTGAGGATCTGAACAAAGCGAA-ATTGGAT-T 1806
| | || | | ||| || ||||||||||||||| ||||||||| ||| ||||||| |
Sbjct 1754 GAACTCGTC--CGGGGGTAACTGGTTAGCTGAGGATTTGAACAAAG-GAAGATTGGATCT 1810
Query 1807 ACTTCTACTTCATGCTCACAGGACTCATGGTTGTTAACATGGCTTACTTCTTGTTGATGG 1866
|||||| |||||| || | ||| || ||| ||||| | ||||| |||||| |||||
Sbjct 1811 -CTTCTATTTCATGATCGCTGGAATCTTGGCAGTTAATTTTGCTTATTTCTTGGTGATGT 1869
Query 1867 CTAGATGGTATAGATACAAAGGAGGTAATGATGAAG 1902
| |||||||| || ||||||||| || |||||||||
Sbjct 1870 CAAGATGGTACAGGTACAAAGGAAGTGATGATGAAG 1905
> Ahg887958 jgi|Araly1|887958|Al_scaffold_0303_1
Length=441
Score = 532 bits (288), Expect = 3e-150
Identities = 400/447 (89%), Gaps = 36/447 (8%)
Strand=Plus/Plus
Query 63 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAATCATAACAACAAC 122
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATGAAGAGCAGAGTCATTCTTAACCATAGAGACAGAAGAGATAAGAA-C--AACAACAAC 57
Query 123 AACACCAATCATTACACACAGGTTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 182
| | |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 58 -A-A-CAATAATTACACACAGATTGATACTATGGAGAGAAAGCCTCTTGAGGTTGAGCCA 114
Query 183 TCTACTACGAC---G---A-CTA--AC-AC--CGAT----GTGG-TC-GAT--TCT---T 219
|| || ||| | | | ||| | | |||| |||| || ||| | | |
Sbjct 115 TCAACGACGGCGGTGAACACCTACTCCGCCGTCGATGGCGGTGGTTCTGATGGTGTGACT 174
Query 220 TCG-A-G--GA--A-GAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 272
||| | | || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 TCGAAGGTCGACGACGAGCAGAGAAAAATCGTTTATAGAGGATGGAAAGTCATGCCTTTT 234
Query 273 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 ATCATTGGTAATGAGACATTTGAGAAGCTTGGGATCATAGGGACATTATCAAACCTTCTT 294
Query 333 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTGTACCTAACTTCTGTATTCAACCTTAAGAGCTACACAGCTGCAACTATCATCAATGCC 354
Query 393 TTTAGTGGTACAATCAATTTCGGGACTTTTATTGCTGCCTTTCTTTGCGACACTTACTTT 452
||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 355 TTTAGTGGTACAATCAACTTCGGGACTTTTATTGCTGCTTTTCTTTGCGACACATACTTT 414
Query 453 GGTCGCTACAAGACTCTCAGTGTCGCT 479
|||||||||||||||||||||||||||
Sbjct 415 GGTCGCTACAAGACTCTCAGTGTCGCT 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81170312095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5