BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47980.1
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485159 jgi|Araly1|485159|fgenesh2_kg.5__1151__AT3G47980.1 1541 0.0
Ahg496454 jgi|Araly1|496454|fgenesh2_kg.8__2270__AT5G62720.1 503 1e-141
> Ahg485159 jgi|Araly1|485159|fgenesh2_kg.5__1151__AT3G47980.1
Length=1051
Score = 1541 bits (834), Expect = 0.0
Identities = 965/1027 (94%), Gaps = 13/1027 (1%)
Strand=Plus/Plus
Query 9 TCTCTCTCTGTCATCCCTAATTAGAAAAGAAAAGAAGGGAACATATTTTTG--AGTCTTT 66
||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 TCTCTCTCTGTCATCCCCAATTAGAAAAGAAAAGAAGGGAACATATTTTTGATATTCTTT 60
Query 67 GTTGAGATATTTACATCAAAACACTCTCTCAACAACCATGGCTTCGCTTCCGGTGAAGCC 126
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 61 GTTGAGATATTTACATCAAAAC-C-CTCCCAACAACCATGGCTTCGCTTCCGGTGAAGCC 118
Query 127 TCTACCTTCCGGCCACTTACAGCTTCATAGCCGGAATCTTATTATTCCGCCATCAATGGT 186
|||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 119 TCTACCTTCCGGCCACTTACAGCTTCATCGCCGGAATCTTATTATTCCGTCTTCAATGGG 178
Query 187 AACCGTTGGTTTCAAAAGGCATCACTTCTTAGGAGTCTCTTCTTATGGTTTATGTATTGA 246
|||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 179 AACCGTTGGTTTCAAAAGGCATAATTTCTTAGGAGTCTCTTCTTATGATTTATGTATTGA 238
Query 247 TGAATCTGTAAGGCATATGAGAAGCCTAAGGTCGTCGAGCAATCGTCGGCGAGTAAGTAA 306
||||||||| ||||||||||||||||| |||||||| ||||||||| ||| |||||| ||
Sbjct 239 TGAATCTGTGAGGCATATGAGAAGCCTTAGGTCGTCAAGCAATCGTTGGCCAGTAAGCAA 298
Query 307 AAGCGCCGGCGTGTCTATGCCGGTGGCTTCCTCTGATGATTTTCCAGCGGTTTCTTGGGA 366
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 AAGCGCCGGCGTGTCTATGCCGGTGGCTTCCTCTGATGATTTTCCGGCGGTTTCTTGGGA 358
Query 367 GTCTTGGAAGCCGGAAAAGACCACGGTGGCTCCGTCGCTGAGTGACGTCATCTGGCCTGC 426
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AACTTGGAAGCCCGAAAAGACCACGGTGGCTCCGTCGCTGAGTGACGTCATCTGGCCTGC 418
Query 427 AGCAGGAGCCTTTGCGGCGATGGCGATAATGGGAAGAATAGATCAAATGCTAAACCCTAA 486
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 AGCAGGAGCCTTTGCGGCGATGGCGATACTGGGAAGAATAGATCAAATGCTAAACCCTAG 478
Query 487 AGGGATCTCAATGTCGGTTGCACCACTTGGTGCTGTCTCTGCCATTCTCTTCACCACTCC 546
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 479 AGGGATCTCAATGTCGGTTGCACCACTTGGTGCCGTCTCTGCCATTCTCTTCATCACTCC 538
Query 547 TTCTGCTCCTGCTGCTCGGAAATACAATATGTTCACGGCTCAAATAGGTTGTGCAGCCAT 606
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 TTCTTCTCCTGCTGCTCGGAAATACAATATGTTCACGGCTCAAATAGGCTGTGCAGCCAT 598
Query 607 TGGAGTGTTGGCGTTCTCCGCCTTTGGGCCAAGCTGGCTAGCCCGCAGTACCGCTCTCGC 666
|||||||||||| ||||| | |||||||||| ||||||| ||||||||||| ||||||||
Sbjct 599 TGGAGTGTTGGCATTCTCAGTCTTTGGGCCAGGCTGGCTTGCCCGCAGTACGGCTCTCGC 658
Query 667 CGCTTCCATCGCGTTCATGGTCATCACTCGTGCCAACCATCCGCCTGCGGCGAGTTTACC 726
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CGCTTCCATCGCCTTCATGGTCATCACTCGTGCCAACCATCCGCCTGCGGCGAGTTTACC 718
Query 727 ACTACTGTTTATAGACGGAGCAAAGTTGCATAAACTGAACTTTTGGTACGCATTATTCCC 786
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACTACTGTTCATAGACGGGGCAAAGTTGCATAAACTGAACTTTTGGTACGCATTATTCCC 778
Query 787 CGGTGCAGCCGCTTGTATCCTTCTCTGCTTCCTCCAAGCGATCGTGGGTTACTTGAAGGA 846
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 779 CGGTGCAGCCGCTTGTATCCTTCTCTGCTTCCTCCAAGAGATCGTGTGTTACTTGAAGGA 838
Query 847 AAACTTAAAATTTTGACGAATG-AAAA-AG-----G-GATACGCGTTTATATTTATGTAT 898
|||||| ||||||||||||||| |||| || | |||||| |||||||| ||||||
Sbjct 839 AAACTTCAAATTTTGACGAATGGAAAAGAGAATAAGAGATACGTGTTTATATAAATGTAT 898
Query 899 ACAAAACATATATTGG-TGGAGGAGATTCTGTGAAGATTTTTTATTCATGTTTAGACGTT 957
|||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 899 ACAAAACACATATTGGGTGGAGGAGATTATGTGAAGATTTTTGATTCATGTTTAGACGTT 958
Query 958 TACTGTAGTTGGTCGACGTTTTTCGTACGTACCCGtatataaatgaatatatatacaaat 1017
|||| ||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 959 TACTTTAGATGGTCGACGTATTTCGCACGTAGCCGTATATAAATGAATATATATACAAAT 1018
Query 1018 atatatT 1024
|||||||
Sbjct 1019 ATATATT 1025
> Ahg496454 jgi|Araly1|496454|fgenesh2_kg.8__2270__AT5G62720.1
Length=926
Score = 503 bits (272), Expect = 1e-141
Identities = 437/516 (85%), Gaps = 14/516 (3%)
Strand=Plus/Plus
Query 362 TGGGAGTCTTGGAAGCCGGAAAAGAC--C-ACGG-T--GGCTCCGTCGCTGAGTGACGTC 415
||||| || |||||||| || ||||| | ||| | ||||| || |||||||||||||
Sbjct 353 TGGGACTCGTGGAAGCCAGATAAGACGGCGGCGGCTACGGCTCTGTTGCTGAGTGACGTC 412
Query 416 ATCTGGCCTGCAGCAGGAGCCTTTGCGGCGATGGCGATAATGGGAAGAATAGATCAAATG 475
|| ||||||||||| ||||| |||||||| ||||| ||| |||||||||| |||||||||
Sbjct 413 ATTTGGCCTGCAGCTGGAGCGTTTGCGGCAATGGCAATATTGGGAAGAATGGATCAAATG 472
Query 476 CTAAAC-CCTAAAGGGATCTCAATGTCGGTTGCACCACTTGGTGCTGTCTCTGCCATTCT 534
|| | | || |||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 473 CT-ATCTCCAAAAGGGATTTCAATGTCAGTTGCACCACTTGGTGCTGTCTCCGCCATTCT 531
Query 535 CTTCACCACTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTCACGGCTCAAATAGG 594
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 532 TTTCATCACTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTTTTGGCTCAAATAGG 591
Query 595 TTGTGCAGCCATTGGAGTGTTGGCGTTCTCCGCCTTTGGGCCAAGCTGGCTAGCCCGCAG 654
|||||| || ||||||||| | || ||||||| ||| || ||| ||||||| ||||| ||
Sbjct 592 TTGTGCTGCGATTGGAGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAG 651
Query 655 TACCGCTCTCGCCGCTTCCATCGCGTTCATGGTCATCACTCGTGCCAACCATCCGCCTGC 714
| ||| ||||||||||||||||| || |||||||| ||||||||||| || || |||||
Sbjct 652 TGTCGCCCTCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGC 711
Query 715 GGCGAGTTTACCACTACTGTTTATAGACGGAGCAAAGTTGCATAAACT-GAACTTT-TGG 772
|||||| |||||| || |||| ||||| ||||||||||| ||| | || ||| ||| |||
Sbjct 712 GGCGAGCTTACCATTAATGTTCATAGATGGAGCAAAGTTCCATCA-CTTGAA-TTTCTGG 769
Query 773 TACGCATTATTCCCCGGTGCAGCCGCTTGTATCCTTCTCTGC-TTCCTCCAAGCGATCGT 831
|| ||||| ||||| |||||||| |||||| || | || ||| ||| ||||| |||||||
Sbjct 770 TATGCATTGTTCCCAGGTGCAGCTGCTTGTGTCATCCTATGCCTTC-TCCAATCGATCGT 828
Query 832 GGGTTACTTGAAGGAAAACTTAAAATTTTGACGAAT 867
||||||||||||||||| | ||||||||| ||||
Sbjct 829 ATGTTACTTGAAGGAAAACATGAAATTTTGATGAAT 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40867767024
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5