BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47990.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485160 jgi|Araly1|485160|fgenesh2_kg.5__1152__AT3G47990.1 2178 0.0
> Ahg485160 jgi|Araly1|485160|fgenesh2_kg.5__1152__AT3G47990.1
Length=1449
Score = 2178 bits (1179), Expect = 0.0
Identities = 1352/1428 (95%), Gaps = 41/1428 (3%)
Strand=Plus/Plus
Query 108 AAATCCCTCCTTTTTCT-T-CTTTCTCACTTGCATC-ATTAGCTCACGATTTCGAGT-AT 163
||||||||||||||||| | ||||||||| | || | || ||||||||||||||| | ||
Sbjct 57 AAATCCCTCCTTTTTCTCTCCTTTCTCAC-T-CA-CAATCAGCTCACGATTTCGA-TAAT 112
Query 164 CGATTCAACCATTTTGATCTTCAATCTATCTTAGGGTTTCTCCTTAATTCT-TCTCTCGG 222
||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 113 CGATTCAACCATTTTGATCTTCAATCTTTCTTAGGGTTTCTCCTT-CTTCTCTCTCTCGG 171
Query 223 ATTTTAGCTCTTCTCGACTATTACTCACCTCTCTCATGGCGATGAGAGGTGTCGATTTCA 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ATTTTAGCTCTTCTCGACTATTACTCACCTCTCTCATGGCGATGAGAGGTGTCGATTTCA 231
Query 283 AGTGGTACGATGGGTTCTTCTTGTCGATGCTTGCGACTAGTGTAATCATTGTAGCTGTCA 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 AGTGGTACGATGGGTTCTTCTTGTCGATGCTTGCGACTAGTGTAATCATTGTAGCTGTCA 291
Query 343 ACTGGAACAGATATCGAGCTTGTGAATACCCGTTGCATATATGGATTGTGGTCGATTACA 402
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 292 ACTGGAACAGATATCGAGCGTGCGAATACCCGTTGCATATATGGATTGTGGTCGATTACA 351
Query 403 CCACCGTCTTTATCTTCCGTGTCTTCATGTTTGTTGACAATGGTCTTGCTTCTGGACTTG 462
||||||| ||| | ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 352 CCACCGTGTTTTTATTCCGCGTCTTCATGTTTGTTGACAATGGTCTTGCTGCTGGACTTG 411
Query 463 GCTTGGATTTTGGAAGTCAACAGCGGAACGCCATGTTTTGTGGGAGAGTGGTTGTCCTGT 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GCTTGGATTTTGGAAGTCAACAGCGGAACGCCATGTTTTGTGGGAGAGTGGTTGTCCTGT 471
Query 523 CTGTCCTATCTCTGCTGCTGTATCCATTTCTGTGGGCTTGGACTGTAATTGGTACACAAT 582
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 472 CTGTCCTATCTCTGCTGCTGTATCCTTTTCTGTGGGCTTGGACTGTAATTGGTACACAAT 531
Query 583 GGTTTACAAAGTCGAAAACTTGTTTACCTGAAGAAGGCCAGAAATGGGGCTTTCTTATTT 642
||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 532 GGTTTACAAGGGCGAAAACTTGTTTACCTGAAGAAGGCCAGAAATGGGGTTTTCTCATTT 591
Query 643 GGTTGATGTTTAGCTACTGTGGCCTCCTCTGCATTGCTTTCATCTGTGTCGGAAAGTGGT 702
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGTTGATGTTCAGCTACTGTGGCCTCCTCTGCATTGCTTTCATCTGTGTCGGAAAGTGGT 651
Query 703 TGACACGAAGACAGGTACACTTATTACGTGCTCAGCAGGGAATTCCGATTTCAGAGTTCG 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TGACACGAAGACAGGTACACTTATTACGTGCTCAGCAGGGAATTCCGATTTCAGAGTTCG 711
Query 763 GGATTTTAGTTGACATGATTAGGGTACCTGACTGGGCATTCGAAGCCGCAGGCCAAGAGA 822
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 712 GGATTTTAGTTGACATGATTAGGGTACCTGACTGGGCATTCGAAGCCGCTGGCCAAGAGA 771
Query 823 TGAGAGGCATAAGTCAAGATGCTGCTACATATCATCCTGGACTTTACTTGACTCCAGCCC 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TGAGAGGCATAAGTCAAGATGCTGCTACATATCATCCTGGACTTTACTTGACTCCAGCCC 831
Query 883 AGACAGAAGCTGTTGAGGCACTCATTCAAGAACTTCCTAAGTTCAGGTTAAAAGCTGTGC 942
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AGACAGAAGCTGTCGAGGCACTCATTCAAGAACTTCCTAAGTTCAGGTTAAAAGCTGTGC 891
Query 943 CAGATGACTGCGGTGAATGCTTAATCTGCTTAGAGGAGTTCCATATCGGCCATGAGGTTA 1002
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 892 CAGATGACTGTGGTGAATGCTTAATCTGCTTAGAGGAGTTCCATATTGGCCATGAGGTTA 951
Query 1003 GAGGTTTACCTTGCGCCCATAATTTCCATGTGGAGTGCATAGACCAGTGGCTGCGTTTAA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GAGGTTTACCTTGCGCCCATAATTTCCATGTGGAGTGCATAGACCAGTGGCTGCGTTTAA 1011
Query 1063 ACGTGAAATGTCCCCGTTGCCGGTGCTCGGTTTTCCCAGACCTCGATCTCAGTGCATTAT 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 ACGTGAAATGTCCCCGTTGCCGGTGCTCGGTTTTCCCAGACCTCGATCTCAGTGCATTAT 1071
Query 1123 CCAACCTCCAGAGCTCAGGAACCGAACAACATTCACAAGTAAACACAGAAACATCAGAAG 1182
|||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct 1072 CCAACCTCCAGAGCTCAGGAACAGAACAACCTTCACAAGTAAACACAGAAACAACAGAAG 1131
Query 1183 CTCGGTACATAAGAAGCCAACCTCAGAGCGAGAGCTACTTCTTGAGAGTTCAATCCTTAA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CTCGGTACATAAGAAGCCAACCTCAGAGCGAGAGCTACTTCTTGAGAGTTCAATCCTTAA 1191
Query 1243 TTCACCCAGTCCACACAGATACCGCTCTGGAGACTGCAGAGAACGGCGGGGTTCCTCCTG 1302
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1192 TTCACCCAGTCCACACAGACACCGCTCTGGAGACTGCAGAGAACGGTGGAGTTCCTCCTG 1251
Query 1303 TCTTGACCGATCTATCTCCATCTCGGAGATGAGAGAAAGAAATGAGCCTATGGAAATTTT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TCTTGACCGATCTATCTCCATCTCGGAGATGAGAGAAAGAAATGAGCCTATGGAAATTTT 1311
Query 1363 TACTCAGTACTAACTCTCGACTGATTTGCCAACCCACTCTCTTAAAAAGTTTTCAGCTTA 1422
||||| |||||||||| | ||||||||||||| | | |||||||| | | | |
Sbjct 1312 -ACTCAATACTAACTCTTGGCTGATTTGCCAAC--A-T-TCTTAAAA--T-----G-T-A 1357
Query 1423 AACAGTCTTGGAATGTAAATAAATTGGGGTTTAAAGAAGAGAAAAACCAATCTTGGGTTT 1482
|| | || | | | ||||||||||||| ||||||||||||| |||||||
Sbjct 1358 AA---T-----AA---A--T---T-GGGGTTTAAAGAACAGAAAAACCAATCCTGGGTTT 1400
Query 1483 ACATTTGGTAAGAGTGGAGTATTATTGATCATGTTCAAACTCTTTAAT 1530
||||||||||||| ||||| ||| |||||||||| |||||||||||||
Sbjct 1401 ACATTTGGTAAGAATGGAGAATTGTTGATCATGTCCAAACTCTTTAAT 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5