BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48000.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485161 jgi|Araly1|485161|fgenesh2_kg.5__1153__AT3G48000.1 2889 0.0
Ahg914415 jgi|Araly1|914415|Al_scaffold_0001_4669 922 0.0
Ahg930165 jgi|Araly1|930165|scaffold_302622.1 577 1e-163
Ahg354766 jgi|Araly1|354766|fgenesh1_pg.C_scaffold_7001939 462 4e-129
> Ahg485161 jgi|Araly1|485161|fgenesh2_kg.5__1153__AT3G48000.1
Length=1903
Score = 2889 bits (1564), Expect = 0.0
Identities = 1801/1911 (94%), Gaps = 34/1911 (2%)
Strand=Plus/Plus
Query 1 AGTTAAGCGACATGTGTTAGAGATATCCGGAGATCTCAACCGTTGGATTCTTTCTCCTTC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AGTTAAGCGACATGTGTTAGAGATCTCCGGAGATCTCAACCGTTGGATTCTTTCTCCTTC 60
Query 61 AAATCAAATTATAAATCCCATCAAACagagagagagagagaagaggaggagaATTCGAAG 120
||||| ||||||| ||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 61 CAATCATATTATAAGTCCCATC--ACAGAGAGAGAGA-AGAAGAGGAGGAGAATCCGAAG 117
Query 121 AATAAAAGATAAGAACTTTGACGTTTTGAAGCTTAAAGCTTGAAACTTGTTTCATCCATG 180
|||||||||||||||||||| || || |||| ||| ||||||||
Sbjct 118 ---AAAAGATAAGAACTTTGACG--TT-----TT----CTTG----TTG---CATCCATG 156
Query 181 GCGGCTCGTAGAGTGTCTTCTCTTTTATCTCGATCTTTTTCAGCTTCCTCTCCCTTACTG 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 157 GCGGCTCGTAGAGTGTCTTCTCTTTTATCTCGATCTTTATCAGCTTCCTCTCCCTTACTG 216
Query 241 TTTCGTTCTCAAGGGAGAAATTGTTACAATGGAGGGATCTTAAGGAGATTTGGAACCTCT 300
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 217 TTTCGTTCTCAAGGGAGAAATTGTTACAGTGGAGGGATCTTAAGGAGATTTGGAACCTC- 275
Query 301 TCTGCTGCTGCTGAGGAAATCATAAACCCATCTGTTCAAGTTTCTCACACACAGCTCCTC 360
| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 276 T-T-CTGCTGCTGAGGAAATCATTAACCCTTCTGTTCAAGTTTCTCACACACAGCTCCTC 333
Query 361 ATCAATGGGAACTTTGTTGACTCTGCTTCTGGTAAGACGTTTCCGACTCTTGATCCGAGG 420
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 334 ATAAATGGGAACTTCGTTGACTCTGCTTCTGGTAAGACGTTTCCGACTCTTGATCCGCGG 393
Query 421 ACAGGCGAAGTCATTGCTCATGTAGCTGAAGGCGATGCTGAAGATATCAATCGAGCTGTG 480
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 394 ACAGGCGAAGTCATTGCGCATGTAGCTGAAGGCGATGCTGAAGATATCAATCGAGCGGTG 453
Query 481 AAAGCTGCAAGGACGGCCTTTGATGAAGGACCTTGGCCTAAAATGAGTGCTTATGAAAGG 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AAAGCTGCAAGGAAGGCCTTTGATGAAGGACCTTGGCCTAAAATGAGTGCTTATGAAAGG 513
Query 541 TCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGCGTCT 600
|||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 514 TCAAGAGTAATGCTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAGGAGCTCGCGTCT 573
Query 601 CTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCCCATG 660
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||
Sbjct 574 CTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCCAATG 633
Query 661 TTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAATT 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 634 TTTGCAAGATTGTTCCGTTACTATGCCGGATGGGCGGATAAGATTCATGGACTAACAGTT 693
Query 721 CCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGGACAG 780
|||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||
Sbjct 694 CCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCGATAGGTGTTGCTGGACAG 753
Query 781 ATCATACCGTGGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTGCT 840
||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 754 ATCATTCCATGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTGCT 813
Query 841 TGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCTATGCT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCTATGCC 873
Query 901 GGAAAGCTTTTCCTTGAAGCGGGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGGGATTC 960
|| |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 874 GGGAAGCTTTTGCTTGAGGCGGGTCTTCCTCCTGGTGTTCTGAATATAGTTTCTGGATTC 933
Query 961 GGTGCAACAGCAGGTGCTGCCCTCGCGAGTCATATGGATGTAGACAAGCTTGCTTTTACA 1020
|||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 934 GGTGCAACTGCAGGTGCTGCCCTCGCTAGTCACATGGATGTAGACAAGCTTGCTTTTACA 993
Query 1021 GGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGCAATCTTAAGCCC 1080
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 994 GGATCAACTGATACGGGCAAAGTTATACTTGGTTTGGCTGCTAACAGCAATCTTAAGCCG 1053
Query 1081 GTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATATTGAT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1054 GTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATATCGAT 1113
Query 1141 AAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCTGCGCG 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1114 AAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCTGTGCG 1173
Query 1201 GGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAAAGGCA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 GGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAAAGGCA 1233
Query 1261 CGCGCATTGAAACGTGTTGTTGGTGATCCTTTCAGGAAAGGCATTGAACAGGGTCCTCAG 1320
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 CGCGCATTGAAACGTGTGGTTGGTGATCCTTTCAGGAAAGGCATTGAACAGGGTCCTCAG 1293
Query 1321 ATCGATTTGAAGCAATTTGAGAAAGTGATGAAGTACATAAAGTCAGGTATCGAAAGCAAT 1380
|| |||| |||||| ||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1294 ATTGATTCGAAGCAGTTTGAGAAAGTGATGAAGTACATAAGGTCAGGTGTCGAAAGCAAT 1353
Query 1381 GCTACTCTTGAATGTGGTGGTGATCAGATTGGAGACAAAGGTTACTTCATCCAACCTACT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 GCTACTCTTGAATGTGGTGGTGATCAGATTGGAGACAAAGGTTACTTCATCCAACCTACT 1413
Query 1441 GTCTTCTCTAATGTTAAGGATGACATGCTTATCGCTCAAGACGAGATTTTCGGTCCAGTC 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 GTCTTCTCTAATGTTAAGGATGACATGCTTATCGCTCAAGACGAGATTTTCGGTCCAGTC 1473
Query 1501 CAATCGATCTTGAAGTTCAGTGATGTGGATGAGGTGATAAAGAGGGCGAACGAGACGAAG 1560
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1474 CAATCAATCTTGAAATTCAGTGATGTGGATGAGGTGATAAAGAGGGCGAACGAGACGAGG 1533
Query 1561 TACGGGCTAGCGGCAGGGGTTTTCACGAAGAATCTGGACACGGCAAACAGGGTTTCAAGG 1620
||||||||||| |||||||||||||| |||| | ||||||| |||||||||||||| |||
Sbjct 1534 TACGGGCTAGCCGCAGGGGTTTTCACAAAGAGTTTGGACACCGCAAACAGGGTTTCGAGG 1593
Query 1621 GCTTTGAAAGCTGGTACCGTATGGGTTAACTGCTTCGACGTATTTGATGCAGCCATACCA 1680
|||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 1594 GCTTTGAAAGCTGGCACCGTTTGGGTTAACTGCTTCGACGTCTTTGACGCAGCCATTCC- 1652
Query 1681 TTT-GGTGGTTACAAGATGAGTGGGAATGGGAGAGAGAAAGGCATATACAGTCTCAATAA 1739
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1653 TTTCGGTGGTTACAAGATGAGCGGGAATGGGAGAGAGAAAGGCATATATAGTCTCAATAA 1712
Query 1740 TTACTTGCAGATCAAGGCAGTCGTCACTGCTCTAAATAAGCCTGCCTGGATCTGATCTCT 1799
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1713 TTACTTGCAGATCAAGGCAGTCGTCACTGCTCTTAATAAGCCTGCCTGGATCTGATCTCT 1772
Query 1800 GGAGTGTGGTTTCAGCATCATAAATGCTCAAACAAAAGAAATAGACTCTATAAA--GTTA 1857
||||| |||||| | |||||||||||||||||||||||| ||||| |||||| |||
Sbjct 1773 GGAGTTTGGTTT-AT--TCATAAATGCTCAAACAAAAGAAAGAGACTTTATAAAAAGTTG 1829
Query 1858 CAATAGTAATAATTAAGGTCATGGTTTGTAATTTGAGTAACGGATTGTGAT 1908
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1830 CAATAGTAATAATTAAGGTCATGGTTTGTAACTTGAGTAACGGATTGTGAT 1880
> Ahg914415 jgi|Araly1|914415|Al_scaffold_0001_4669
Length=702
Score = 922 bits (499), Expect = 0.0
Identities = 662/735 (90%), Gaps = 34/735 (5%)
Strand=Plus/Plus
Query 537 AAGGTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGC 596
|||||||||||| |||| | ||||| ||||||||||||||||||||||||||| |||||
Sbjct 1 AAGGTCAAGAGTAATGTT-AAGTTTGTAGATTTGGTTGAGAAACACAGCGAAGAACTCGC 59
Query 597 GTCTCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCC 656
|||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 60 GTCTCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCC 119
Query 657 CATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAAC 716
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 AATGTTTGCAAGATTGTTCCGTTACTATGCT---TGGGCGGATAAGATTCATGGACTAAC 176
Query 717 AATTCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGG 776
| |||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct 177 AGTTCCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCTGG 236
Query 777 ACAGATCATACCGT-GGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTC 835
||||||||| || | |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 237 ACAGATCATTCC-TGGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTACTC 295
Query 836 TTGCTTGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTTCT 895
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 296 TTGCTTGTGGTAACACCACTGTCCTTAAAACCGCTGAGCAAACACCTCTCACGGCTTTCT 355
Query 896 ATGCTGGAAAGCTTTTCCTTGAAGCGGGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGG 955
||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 356 ATGCTGGCAAGCTTTTACTTGAAGCTGGTCTTCCTCCTGGTGTTCTGAATATAGTTTCTG 415
Query 956 GATTCGGTGCAACAGCAGGTGCTGCCCTCGCGAGTCATATGGATGTAGACAAGCTTGCTT 1015
||||||||||||| | ||| | ||||||||||| | | || | || ||
Sbjct 416 GATTCGGTGCAACTGAAGG-GATGCCCTCGCGA--C-T-TG--------C----TT--TT 456
Query 1016 TTACAGGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGCAATCTTA 1075
||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 457 --ACAGGATCGACTGATACAGTCAAAGTTATACTTGGATTGGCTGCCAACAGCAATCTTA 514
Query 1076 AGCCCGTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGATGCTGATA 1135
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 515 AGCCGGTAACTCTGGAACTTGGAGGGAAATCACCATTCATCGTATTCGAAGATGCTGATA 574
Query 1136 TTGATAAAGCTGTAGAGCTTGCACACTTTGCCCTCTTCTTCAACCAGGGGCAATGTTGCT 1195
||||||| || ||| ||||||||||||||||||||||||||| | |||| |||||
Sbjct 575 TTGATAAGGCCGTA----TTGCACACTTTGCCCTCTTCTTCAACC-GA--CAATCTTGCT 627
Query 1196 GCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTTGAGAAATCAA 687
Query 1256 AGGCACGCGCATTGA 1270
||||||| |||||||
Sbjct 688 AGGCACGGGCATTGA 702
> Ahg930165 jgi|Araly1|930165|scaffold_302622.1
Length=1390
Score = 577 bits (312), Expect = 1e-163
Identities = 361/385 (94%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 535 GAAAGGTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTC 594
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 723 GAAAGGTCAAGAGTAATGTTGAGGTTTGTAGATTTGGTTGAGAAACACAGCGAAGAACTC 782
Query 595 GCGTCTCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATT 654
|||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 783 GCGTCTCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATT 842
Query 655 CCCATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTA 714
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CCAATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTA 902
Query 715 ACAATTCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCT 774
||| |||||| ||||||||||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct 903 ACAGTTCCAGTTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCT 962
Query 775 GGACAGATCATACCGTGG-AATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGC 833
||||||||||| || ||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 963 GGACAGATCATTCC-TGGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTAC 1021
Query 834 TCTTGCTTGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTT 893
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1022 TCTTGCTTGTGGTAACACCACTGTCCTTAAAACCGCTGAGCAAACACCTCTCACGGCTTT 1081
Query 894 CTATGCTGGAAAGCTTTTCCTTGAA 918
||||||||| |||||||| ||||||
Sbjct 1082 CTATGCTGGCAAGCTTTTACTTGAA 1106
Score = 215 bits (116), Expect = 1e-54
Identities = 128/134 (96%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 1009 CTTGCTTTTACAGGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGC 1068
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 1107 CTTGCTTTTACAGGATCGACTGATACAGTCAAAGTTATACTTGGATTGGCTGCCAACAGC 1166
Query 1069 AATCTTAAGCCCGTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGAT 1128
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1167 AATCTTAAGCCGGTAACTCTGGAACTTGGAGGGAAATCACCATTCATCGTATTCGAAGAT 1226
Query 1129 GCTGATATTGATAA 1142
||||||||||||||
Sbjct 1227 GCTGATATTGATAA 1240
Score = 161 bits (87), Expect = 2e-38
Identities = 89/90 (99%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1186 CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT 1307
Query 1246 GAGAAATCAAAGGCACGCGCATTGAAACGT 1275
||||||||||||||||| ||||||||||||
Sbjct 1308 GAGAAATCAAAGGCACGGGCATTGAAACGT 1337
> Ahg354766 jgi|Araly1|354766|fgenesh1_pg.C_scaffold_7001939
Length=516
Score = 462 bits (250), Expect = 4e-129
Identities = 289/308 (94%), Gaps = 2/308 (1%)
Strand=Plus/Plus
Query 540 GTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTCGCGTC 599
||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 3 GTCAAGAGTAATGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGTGAAGAACTCGCGTC 62
Query 600 TCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATTCCCAT 659
||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 63 TCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATTCCAAT 122
Query 660 GTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAAT 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 123 GTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTAACAGT 182
Query 720 TCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCTGGACA 779
||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 183 TCCAGCTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCTGGACA 242
Query 780 GATCATACCGT-GGAATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGCTCTTG 838
|||||| || | |||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 243 GATCATTCC-TAGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTACTCTTG 301
Query 839 CTTGTGGT 846
||||||||
Sbjct 302 CTTGTGGT 309
Score = 163 bits (88), Expect = 4e-39
Identities = 105/113 (93%), Gaps = 1/113 (1%)
Strand=Plus/Plus
Query 922 GGTCTTCCTCCTGGTGTTCTGAATATTGTTTCGGGATTCGGTGCAACAGCAGGTGCTGCC 981
|||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| ||||||
Sbjct 311 GGTCTTCCTCCTGGTGTTTTGAATATAGTTTCTGGATTCGGTGCAACTGCAGG-GCTGCC 369
Query 982 CTCGCGAGTCATATGGATGTAGACAAGCTTGCTTTTACAGGATCGACTGATAC 1034
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 370 CTCGCTAGTCACATGGATGTAGACAAGCTTGCTTTTACAGGATCAACTGATAC 422
Score = 141 bits (76), Expect = 2e-32
Identities = 82/85 (96%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1186 CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT 1245
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 432 CAATGTTGCTGAGCGGGGTCTCGGACATTTGTTTATGAGAAAGTGTATGATGAGTTTGTT 491
Query 1246 GAGAAATCAAAGGCACGCGCATTGA 1270
||||||||||||||||| |||||||
Sbjct 492 GAGAAATCAAAGGCACGGGCATTGA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5