BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48010.1
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347894 jgi|Araly1|347894|fgenesh1_pg.C_scaffold_5001286 3493 0.0
> Ahg347894 jgi|Araly1|347894|fgenesh1_pg.C_scaffold_5001286
Length=2115
Score = 3493 bits (1891), Expect = 0.0
Identities = 2045/2120 (96%), Gaps = 7/2120 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAACCTCCACCTCTACACCTCCGCACGGTTTCGCAATTTCCCGACAACATTCTCC 60
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 1 ATGAGCAACCTCCACCTCTACACCTCCGCACGCTTCCGCAATTTCCCGACGGCATTCTCT 60
Query 61 CTCCGTCACCACCACAACGACCCCAACAACCAACGCCGTCGATCCATCTTCTCCAAGCTC 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 61 CTCCGTCACCACCACAACGACCCCAACAACCAACGCCGCCGATCCATCTTCTCCGAGCTC 120
Query 121 CGTGACAAAACTCTCGACCCTGGCGGTGACCTAATCACGAGATGGAACCACATTTTCCTC 180
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CGTGACAAAACCCTCGACCCTGGCGGTGACCTAATTACGAGATGGAACCACATTTTCCTC 180
Query 181 ATCACATGCCTCCTCGCTCTCTTCCTCGATCCTCTCTACTTCTATCTCCCCATTGTCCAA 240
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 ATCACCTGCCTCCTCGCTCTCTTCCTCGATCCTCTCTACTTCTATCTTCCCATTGTCCAA 240
Query 241 GCCGGAACCGCATGTATGTCCATCGACGTCCGTTTCGGCATTTTCGTCACATGCTTCCGA 300
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GCAGGAACCGCATGCATGTCCATCGACGTCCGTTTCGGCATTTTCGTCACATTCTTCCGA 300
Query 301 AACCTAGCCGATCTCTCCTTCCTCATCCACATTCTCCTCAAATTCAAAACCGCTTTTGTA 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACCTAGCCGATCTCTCCTTCCTCATCCACATTCTCCTCAAATTCAAAACCGCTTTTGTC 360
Query 361 TCCAAATCCTCTAGAGTCTTTGGTCGTGGAGAGCTTGTTATGGACCGCCGTGAAATCGCT 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TCCAAATCCTCTAGAGTCTTTGGTCGTGGAGAGCTTGTCATGGACCGCCGTGAAATCGCT 420
Query 421 ATCCGTTACCTCAAATCTGAGTTCGTCATCGACCTAGCCGCCACCCTTCCTCTTCCTCAG 480
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 421 ATCCGTTATCTCAAATCTGAGTTTGTAATCGACCTAGCCGCCACCCTTCCTCTTCCTCAG 480
Query 481 ATAATGATTTGGTTTGTGATACCAAATGCTGGAGAATTCAGATACGCAGCTCACCAGAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATAATGATTTGGTTTGTGATACCAAATGCTGGAGAATTCAGATACGCAGCTCACCAGAAC 540
Query 541 CACACACTTTCATTGATCGTCCTTATACAATATGTGCCTCGCTTCCTCGTCATGCTTCCT 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACACACTTTCCTTGATCGTCCTTATACAATATGTGCCTCGCTTCCTCGTCATGCTTCCT 600
Query 601 CTCAACCGTCGAATCATTAAAGCCACCGGAGTCGCAGCCAAAACAGCCTGGTCCGGTGCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTCAACCGTCGAATCATTAAAGCCACCGGAGTCGCAGCCAAAACAGCCTGGTCCGGTGCA 660
Query 661 GCCTACAATCTCATCCTTTACTTACTTGTGAGCCACGTTCTTGGATCGGTTTGGTACGTT 720
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCCTACAATCTCGTCCTCTACTTACTTGTGAGCCACGTTCTTGGATCGGTTTGGTACGTT 720
Query 721 TTATCGATCCAGAGACAGCACGAATGCTGGAGAAGAGAGTGCATTAAAGAGATGAACGCA 780
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 721 TTATCGATCCAGAGACAACACGAATGCTGGAGAAGAGAGTGTATTAAAGAGATGAATGCA 780
Query 781 ACGCATTCACCTTCTTGTAGTCTCTTGTTTCTAGACTGTGGATCGTTGCATGATCCAGGT 840
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 ACGCATTCACCATCTTGTAGTCTCTTGTTTCTAGACTGTGGATCGTTGCAGGATCCAGGT 840
Query 841 AGACAAGCTTGGATGCGGATCACTCGGGTTCTGTCAAATTGTGATGCACGCAATGACGAT 900
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 841 AGACAAGCTTGGATGCGGATCACTCGGGTTCTGTCAAACTGTGATGCACGCAATGACGAT 900
Query 901 GACCAACATTTTCAGTTTGGTATGTTCGGTGATGCGTTCACTAATGATGTCACTTCCTCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GACCAACATTTTCAGTTTGGTATGTTCGGTGATGCGTTCACTAATGATGTCACTTCCTCT 960
Query 961 CCTTTCTTTGATAAATACTTCTACTGCCTTTGGTGGGGTCTCCGTAACCTCAGTTCCTAT 1020
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 CCTTTCTTTGATAAATACTTCTACTGTCTTTGGTGGGGTCTCCGTAACCTCAGTTCCTAT 1020
Query 1021 GGACAGAGTCTTGCAGCGAGTACACTGAGCAGTGAGACTATATTCAGTTGTTTCATTTGT 1080
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1021 GGACAGAGTCTTGCAGCAAGTACACTGAGTAGTGAGACTATATTCAGTTGTTTCATTTGT 1080
Query 1081 GTCGCGGGTCTTGTTTTCTTCTCTCATCTCATTGGAAATGTTCAGAACTATCTGCAATCG 1140
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTCGCGGGTCTCGTTTTCTTCTCCCATCTCATTGGAAATGTTCAGAACTATCTGCAATCG 1140
Query 1141 ACGACTGCTAGGTTAGACGAATGGAGAGTTC-GAAGAAGAGACACAGAGGAATGGATGCG 1199
|||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1141 ACGACTGCTAGGCTAGACGAATGGAGAGT-CAGAAGAAGAGACACAGAGGAATGGATGCG 1199
Query 1200 ACATAGGCAATTGCCAGATGAGTTACAAGAGCGTGTAAGGCGATTCGTCCAATATAAATG 1259
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1200 ACATAGGCAATTGCCAGAAGAGTTACAAGAGCGTGTAAGGCGATTCGTCCAATACAAATG 1259
Query 1260 GCTAACGACTCGTGGAGTCGACGAAGAAGCCATTCTACGGGCTCTACCATTGGATCTTCG 1319
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 GCTAACGACTCGTGGAGTCGACGAAGAAGCCATTCTACGGGCTCTACCGTTGGATCTTCG 1319
Query 1320 TCGCCAGATCCAACGACATCTCTGTCTTGCCCTCGTTCGCCGTGTGCCGTTCTTTGCGCA 1379
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1320 CCGCCAGATCCAACGACATCTCTGTCTTGCCCTCGTTCGCCGTGTGCCATTCTTTGCGCA 1379
Query 1380 GATGGATGACCAGCTCTTGGATGCGATATGTGAGCGTCTAGTTCCGTCCTTGAACACAAA 1439
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1380 GATGGATGACCAGCTCTTGGATGCGATATGTGAGCGCCTAGTTCCGTCCTTGAACACAAA 1439
Query 1440 AGACACCTATGTTATACGCGAAGGCGATCCTGTAAACGAGATGCTTTTCATTATTAGAGG 1499
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1440 AGACACCTATGTTATACGCGAAGGCGATCCTGTGAACGAGATGCTTTTCATCATTAGAGG 1499
Query 1500 TCAGATGGAGAGTTCAACTACAGATGGTGGACGGTCAGGATTCTTTAACTCTATCACACT 1559
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1500 TCAGATGGAGAGTTCAACTACAGATGGTGGACGGTCAGGGTTCTTTAACTCCATCACGCT 1559
Query 1560 TAGACCAGGAGATTTCTGCGGTGAAGAGCTTTTAACCTGGGCTTTAGTGCCAAACATTAA 1619
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1560 TAGACCAGGAGATTTCTGCGGTGAAGAGCTTTTAACCTGGGCTCTAGTGCCAAACATTAA 1619
Query 1620 TCATAATCTACCATTGTCCACGAGAACCGTAAGGACTCTCTCCGAAGTAGAAGCTTTCGC 1679
||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1620 TCATAATCTCCCATTGTCCACGAGAACTGTGAGGACTCTCTCCGAAGTAGAGGCTTTCGC 1679
Query 1680 TCTCCGAGCAGAGGACTTGAAATTCGTAGCTAACCAATTCAGACGTCTTCACAGCAAGAA 1739
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TCTCCGAGCAGAGGACTTGAAGTTCGTAGCTAACCAATTCAGACGTCTTCACAGCAAGAA 1739
Query 1740 ACTCCAACATGCTTTCAGATACTATTCGCATCAATGGAGAGCATGGGGAACTTGTTTTAT 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ACTCCAACATGCTTTCAGATACTATTCGCATCAATGGAGAGCATGGGGAACTTGTTTTAT 1799
Query 1800 ACAAGCTGCTTGGAGGCGATACATGAAGAGGAAATTAGCAATGGAGTTAGCTAGGCAAGA 1859
||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1800 ACAAGCTGCATGGAGACGATACATGAAGAGGAAGTTGGCAATGGAGTTAGCTAGACAAGA 1859
Query 1860 GGAAGAAGACGATTACT-TCTATGACGATGATGGAGACTATCAATTCGAAGAGGACATGC 1918
||||||||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1860 GGAAGAAGACGATTACTAT-TATGACGATGATGGAGACTATCAATACGAAGAGAACATGC 1918
Query 1919 CTGAAAGTAATAATAACAACGGAGACGAAAACAGCAGCAATAATCAAAATTTGAGTGCAA 1978
||||||||| ||| || ||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 1919 CTGAAAGTAGTAAC--CA-CGGAGACGAAAACAGCAACAATAATCAGAATTTGAGTGCGA 1975
Query 1979 CAATATTAGCGTCTAAGTTCGCAGCTAATACTAAGAGAGGTGTTTTAGGGAACCAAAGAG 2038
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1976 CAATATTAGCGTCTAAGTTCGCAGCTAATACGAAGAGAGGTGTTTTAGGGAACCAAAGAG 2035
Query 2039 GATCTACAAGAATTGATCCTGATCATCCAACTTTGAAGATGCCTAAAATGTTTAAACCAG 2098
| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 2036 GGTCTACAAGAATTGATCCTGATGATCCAACTTTGAAAATGCCTAAAATGTTTAAACCAG 2095
Query 2099 AGGATCCAGGATTCTTCTGA 2118
|||||||||| |||||||||
Sbjct 2096 AGGATCCAGGGTTCTTCTGA 2115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79684792540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5