BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48020.1

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485163 jgi|Araly1|485163|fgenesh2_kg.5__1155__AT3G48020.1         597    3e-170


> Ahg485163 jgi|Araly1|485163|fgenesh2_kg.5__1155__AT3G48020.1
Length=518

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 390/420 (93%), Gaps = 13/420 (3%)
 Strand=Plus/Plus

Query  1    GTAATGGAAGTTGGACAAGCGAATCCGCTTC-T--TGGTGAATCGTCTTGCTGTTCC-AC  56
            ||||||||||||||||||||||||||||||| |  |||||||||||||||||||||| ||
Sbjct  1    GTAATGGAAGTTGGACAAGCGAATCCGCTTCTTGGTGGTGAATCGTCTTGCTGTTCCAAC  60

Query  57   --CACCGTTAAATCCTCCTGGTGGCAGCGAATTCACAGAAACAACCACCAGGAGCCACGG  114
               |||| |||||||||||||||||| |||||||||||   ||||||| ||||| |||||
Sbjct  61   AGTACCGCTAAATCCTCCTGGTGGCATCGAATTCACAG---CAACCACGAGGAGTCACGG  117

Query  115  TGGTGGGTGCGAGCGTTTCTAAAGATCCGAGAATGGTCGGAGATCGTGGCTGGGCCACGG  174
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  TGGTGGGTCCGAGCGTTTCTAAAGATCCGAGAATGGTCGGAGATCGTGGCTGGGCCACGG  177

Query  175  TGGAAGACTTTCATCCG-CAGATTCAACCGCGATCCACGCCGAGGTCAAGACTGGGACGA  233
            ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct  178  TGGAAGACTTTCATCCGGC-GATTCAACCGCGATCCACGCCGAGGCCAAGACTGGGACGA  236

Query  234  TAGTGACAAATTCCGATACGATCCTGTGAGTTACACTTTGAGTTTCGAAGATGAAGACAA  293
            ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  237  TAGCGACAAATTCCGATACGATCCTGTGACTTACACTTTGAGTTTCGAAGATGAAGACAA  296

Query  294  AGACGACGACGACGAAGCTGGAGTCGGTGGAGTCAGAAGCTTCTCGATGCGCTACGCTTC  353
            |||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||
Sbjct  297  AGACGACGACGACGAAGCTGGATTAGGTGGAGCCAGAAGCTTCTCGATGCGCTACGCTTC  356

Query  354  TGTCCCCGTTGCTTCAGGTA-AATCTCCCGCTGTTATCAGCGTTGACGCCGTGAAATGAT  412
            |||||||||||||||||||| || |||| || || |  ||||||||||||||||||||||
Sbjct  357  TGTCCCCGTTGCTTCAGGTACAA-CTCCTGCCGTCAAAAGCGTTGACGCCGTGAAATGAT  415


 Score =  143 bits (77),  Expect = 2e-33
 Identities = 96/104 (92%), Gaps = 5/104 (5%)
 Strand=Plus/Plus

Query  489  TGTTT-AAAAG--T-TAAGTTTGGTTTGATTTATTATTTATCGTTGAAAGTTACTCCTCT  544
            ||||| |||||  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  415  TGTTTGAAAAGTCTCTAAGTTTGGTTTGATTTATTATTTATCGTTGAAAGTTACTCCTCT  474

Query  545  TTCAACGTGTCTTGTAAA-TGTATCACGACGGTCTAATATTTTG  587
            ||||||||||| |||||| | |||||| ||||||||||||||||
Sbjct  475  TTCAACGTGTCATGTAAAATATATCACAACGGTCTAATATTTTG  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22263783528


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5