BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48030.1
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937551 jgi|Araly1|937551|scaffold_501742.1 1520 0.0
> Ahg937551 jgi|Araly1|937551|scaffold_501742.1
Length=1141
Score = 1520 bits (823), Expect = 0.0
Identities = 977/1049 (93%), Gaps = 19/1049 (2%)
Strand=Plus/Plus
Query 1 ATGAGTTCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAAT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGAGTGCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAAT 80
Query 61 CCTCTCGTTCCTCTCGGTGCACTTATGACCGCGGGAGTGCTCACGGCTGGGTTGATTAGT 120
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 81 CCTCTCGTTCCTCTCGGTGCACTTATGACTGCGGGAGTGCTTACGGCTGGGCTGATTAGT 140
Query 121 TTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGGGTGGTCGTCCAG 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 141 TTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGAGTGGTCGTCCAG 200
Query 181 GGTGCTACTGTCGCTTTAATGGTTGGAACCGGTTATTACTACGGTGATAATCCGTGGAAG 240
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 201 GGTGCTACTGTCGCTTTAATGGTTGGAACCGCTTATTACTACGGTGATAATCC------- 253
Query 241 AAGTTACTTTTGTCTGAAATCCATGAAACTGAAGCTCTTTCACCTAAATCTTCATCTGCA 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 254 --GTTACTTTTGTCTGAAATCCATGAAACAGAAGCTCTTTCACCTAAATCTTCATCTGCA 311
Query 301 GCAAC-ACTAACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTGTCTGTTTT 359
||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 312 GCAACTA-TTACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTCTCTGTTTT 370
Query 360 ATGTTTAGTTATCTCTGGTCTTGCTCTTATCATCGTCTTCCTCGGTGTCCTCTACTTGAT 419
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 371 ATGTTTAGTTATCTCTGTTCTTGCTCTTATCATCGTCTTCCTAGGTGTCCTCTACTTAAT 430
Query 420 CTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCCCATTTCAACT-ACAACC 478
|||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 431 CTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCTCATTTCAA-TCCCAACC 489
Query 479 CAGATCTCTTTTCTTTCTCCTCGCCTCAGCTCCAGCACCTGTTCTTCCTCCATGACTCTG 538
||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 490 CAGATCTCTCTTCTTCCTCCTCTCCTCAGCTCCAGCACCTCTTCTTCCTCCATGACTCTG 549
Query 539 GTCTAGACCAGA-CTGCCATCGATGCACTTCCAGTGTTCCTCTATGGTAATGTAACCATT 597
|||||||||||| || |||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 550 GTCTAGACCAGACCT-CCATTGATGCACTTCCCGTGTTCCTCTATGGTAACGTAACCATG 608
Query 598 AGTCTTG-AACAGCCATTCGATTGCGCCGTATGTCTCAATGAGTTCTCTGACACAGACAA 656
|||| || || || | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 609 AGTC-TGAAAGAGTCTTTCGATTGCGCTGTATGTCTCAATGAGTTCTCTGACACAGACAA 667
Query 657 GCTCAGACTACTCCCTGTTTGTAGCCATGCTTTCCATCTACACTGTATCGACACATGGCT 716
|||||| |||||||| || |||||||| || |||||||| ||||||||||||||||||||
Sbjct 668 GCTCAGGCTACTCCCAGTCTGTAGCCACGCATTCCATCTTCACTGTATCGACACATGGCT 727
Query 717 TCTTTCGAACTCTACTTGCCCTCTCTGCAGAAGATCACTCTCAACCTCAAACGTCTGCTA 776
||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 728 TCTCTCCAACTCTACTTGCCCTCTCTGCAGACGATCACTCTCAACCTCAAACGTCTGCTA 787
Query 777 CAACCACT-CGGAGACTCTTGTCGCCCCCTTGTCTGGGCATCAGCAGGTGGATGACGGCA 835
||||| | | ||| ||||||||| ||||||||| |||||||||||||| || || ||||
Sbjct 788 TAACCA-TGCTGAGGCTCTTGTCGTCCCCTTGTCCGGGCATCAGCAGGTCGACGAAGGCA 846
Query 836 AAGCCTCCCTTGCTAAAAGAGTTTTCTCTGTTCGTCTCGGGAGATTCAAAAGCACGAACG 895
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 847 AAGCCTCCCTTGCTAAAAGAGTCTTCTCTGTTCGTCTTGGGAGATTCAAAAGCACGAACG 906
Query 896 AAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATCGGGGTAAGAATGCCAAGAAGAT 955
||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |
Sbjct 907 AAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATTGGTGTAGGAATGCCAAGAAGGT 966
Query 956 GTTACTCGATGGGCACGCAACAGTATCTCGTATGCGATCAAGATTTTGTGGTGGCTCTGT 1015
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 967 GTTACTCGATGGGCACACAACAGTATCTCGAATGCGATCAAGATTTTGTGGTGGCTCTGT 1026
Query 1016 CTTCGTCTCCTCGTGAGGGAAATATCGGT 1044
||||||||| |||||||||||||| ||||
Sbjct 1027 CTTCGTCTCTTCGTGAGGGAAATACCGGT 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39075989925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5