BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48040.1
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485165 jgi|Araly1|485165|fgenesh2_kg.5__1157__AT3G48040.1 1166 0.0
Ahg496470 jgi|Araly1|496470|fgenesh2_kg.8__2286__AT5G62880.1 706 0.0
> Ahg485165 jgi|Araly1|485165|fgenesh2_kg.5__1157__AT3G48040.1
Length=849
Score = 1166 bits (631), Expect = 0.0
Identities = 706/740 (95%), Gaps = 13/740 (2%)
Strand=Plus/Plus
Query 25 tctctctGGTTTTTGGGCGTTTCTTCGTTGAAAGTTG-TTTGCTTTTGGTGAGTTAGAAT 83
||||||||||||||| |||||||||||||||||| || ||||||||| |||||||||||
Sbjct 1 TCTCTCTGGTTTTTGTGCGTTTCTTCGTTGAAAG-TGATTTGCTTTTTCTGAGTTAGAAT 59
Query 84 GGCTTCGAGTGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTGGAAA 143
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGCTACGAATGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTGGAAA 119
Query 144 AACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAACAGT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAACAGT 179
Query 204 TTTTGACAACTTTAGTGTTAATGTTGTGGTTGAAGGCATCACTGTGAACTTAGGCCTTTG 263
||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 180 TTTTGACAACTTTAGTGCTAATGTTGTCGTTGAAGGCATCACTGTGAACTTAGGGCTTTG 239
Query 264 GGACACTGCCGGGCAAGAAGACTATAACAGACTAAGGCCTTTAAGTTACAGAGGAGCAGA 323
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 GGACACTGCCGGGCAAGAAGACTATAACAGACTAAGACCTTTAAGTTACAGAGGAGCAGA 299
Query 324 TGTTTTTGTGTTGGCTTTCTCATTGATCAGCCGAGCTAGCTATGAGAATGTGTTTAAAAA 383
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TGTTTTTGTGTTGGCTTTCTCATTGATCAGCCGAGCTAGCTACGAGAATGTGTTTAAAAA 359
Query 384 GTGGATCCCTGAACTCCAACACTTTGCACCAGGAGTCCCCATTGTGCTTGTTGGTACCAA 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGGATCCCTGAACTCCAACACTTTGCACCAGGAGTCCCCATTGTGCTTGTTGGTACCAA 419
Query 444 AATGGATCTTCGTGAAGATAGACATTACTTGTCTGATCATCCTGGACTGTC-CCCGGTAA 502
|||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||
Sbjct 420 AATGGATCTTCGTGAAGATAAACATTATTTGTCTGATCATCCTGGACTGTCTCCCG-TAA 478
Query 503 CTACATCACAGGGAGAGGAACTCCGCAAGCATATCGGAGCGACTTATTACATTGAATGTA 562
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 479 CTACATCACAGGGAGAGGAACTCCGCAAGCATATCGGAGCGGCGTATTACATTGAATGTA 538
Query 563 GCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATTAAAGTAGTAATTA 622
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 539 GCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATCAAAGTAGTAATTA 598
Query 623 AACCAGCAGTGAAACAAAAGGAGAAGAAGAAGAAG---CAGAAGCCTCGCAGCGGATGTC 679
||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 599 AACCAGCGGTGAAACAAAAGGAGAAGAAGAAGAAGAAGCAGAAGCCGCGCAATGGATGTC 658
Query 680 TCTCAAACATTCTGTGTGGGAAGAATTGATGA-G--TCAATTCCATCTGATGATTGTTCA 736
||||||||||||||||||||||| |||||||| | |||| |||||||||||||||||||
Sbjct 659 TCTCAAACATTCTGTGTGGGAAGCATTGATGATGACTCAACTCCATCTGATGATTGTTCA 718
Query 737 CTTC-ttt-ttttttctttt 754
|||| ||| |||||| ||||
Sbjct 719 CTTCCTTTCTTTTTT-TTTT 737
Score = 130 bits (70), Expect = 2e-29
Identities = 84/91 (92%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 824 AATTAGTAGCTTCTTCGATTCTGTTTGTATATGTGACCCTGATGTTTGTTTGTTTCGATT 883
||| ||||||||||| |||| |||||||| |||| | |||||||||||||||||||||||
Sbjct 759 AATGAGTAGCTTCTTTGATTTTGTTTGTACATGTAAACCTGATGTTTGTTTGTTTCGATT 818
Query 884 TGGTTTGACCCTTATAGAATTGTTATAGCCA 914
|||||||||||||||||||||||| ||||||
Sbjct 819 TGGTTTGACCCTTATAGAATTGTTTTAGCCA 849
> Ahg496470 jgi|Araly1|496470|fgenesh2_kg.8__2286__AT5G62880.1
Length=933
Score = 706 bits (382), Expect = 0.0
Identities = 523/590 (89%), Gaps = 14/590 (2%)
Strand=Plus/Plus
Query 81 AATGGCTTCGAGTGCTTCAAAATTCATCAAATGTGTGACTGTTGGAGATGGTGCCGTTGG 140
|||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 53 AATGGCATCAAGTGCTTCAAAGTTCATCAAATGTGTGACTGTTGGTGATGGTGCCGTTGG 112
Query 141 AAAAACTTGTATGCTCATCTGCTACACTAGCAACAAATTCCCTACTGACTACATACCAAC 200
||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 113 TAAAACCTGTATGCTCATCTGCTACACCAGCAATAAATTCCCCACTGACTACATACCAAC 172
Query 201 AGTTTTTGACAACTTTAGTGTTAATGTTGTGGTTGAAGGCATCACTGTGAACTTAGGCCT 260
|||||||||||||||||||| |||||||| |||||||||| |||||| || ||||| ||
Sbjct 173 AGTTTTTGACAACTTTAGTGCAAATGTTGTTGTTGAAGGCACCACTGTCAATTTAGGGCT 232
Query 261 TTGGGACACTGCCGGGCAAGAAGACTATAACAGACTAAGGCCTTTAAGTTACAGAGGAGC 320
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 233 TTGGGACACTGCTGGGCAAGAAGACTATAACAGATTAAGGCCTTTAAGTTACAGAGGAGC 292
Query 321 AGATGTTTTTGTGTTGGCTTTCTCATT-GATCAGCCGAGCTAGCTATGAGAATGTGTTTA 379
||||||||| || ||| |||||||||| | |||||||||||||||| |||||||| ||||
Sbjct 293 AGATGTTTTCGTCTTGTCTTTCTCATTAG-TCAGCCGAGCTAGCTACGAGAATGTTTTTA 351
Query 380 AAAAGTGGATCCCTGAACTCCAACACTTTGCACCAGGAGT-CCCCATTGTGCTTGTTGGT 438
||||||||||||||||||||||||||||||| |||||||| |||| | || ||||| |||
Sbjct 352 AAAAGTGGATCCCTGAACTCCAACACTTTGCTCCAGGAGTTCCCC-TAGTCCTTGTCGGT 410
Query 439 ACCAAAATGGATCTTCGTGAAGATA-GACATTACTTGTCTGATCATCCTGGACTGTCCCC 497
|||||| | |||||||||||||||| | ||||| ||| |||| ||||||||||| |||||
Sbjct 411 ACCAAATTAGATCTTCGTGAAGATAAG-CATTATTTGGCTGACCATCCTGGACTATCCCC 469
Query 498 GGTAACTACAT-CACAGGGAGAGGAACTCCGCAAGCATA-TCGGAGCGACTTATTACATT 555
|||||||| | |||||||||||||| | || |||| || | || ||||| |||||||||
Sbjct 470 TGTAACTAC-TGCACAGGGAGAGGAATTGCGTAAGC-TAATTGGCGCGACGTATTACATT 527
Query 556 GAATGTAGCTCAAAAACTCAACAGAATGTGAAAGCCGTATTTGATGCTGCTATTAAAGTA 615
|| |||||||||||||||||||||||||||||||| || |||||| | || || |||| |
Sbjct 528 GAGTGTAGCTCAAAAACTCAACAGAATGTGAAAGCAGTTTTTGATTCCGCAAT-AAAGGA 586
Query 616 -GTAATTAAACCAGCAG-TGAAACAAAAGGAGAAGAAGAAGAAGCAGAAG 663
|| || ||||| || | | |||||||||||||||| ||||||| |||||
Sbjct 587 AGTGATCAAACC-GCTGGTTAAACAAAAGGAGAAGACGAAGAAGAAGAAG 635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35606804478
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5