BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48070.2
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897649 jgi|Araly1|897649|Al_scaffold_0005_1615 1544 0.0
Ahg496476 jgi|Araly1|496476|fgenesh2_kg.8__2292__AT5G62910.1 152 6e-36
Ahg916316 jgi|Araly1|916316|Al_scaffold_0008_1067 95.3 1e-18
> Ahg897649 jgi|Araly1|897649|Al_scaffold_0005_1615
Length=1074
Score = 1544 bits (836), Expect = 0.0
Identities = 1009/1086 (93%), Gaps = 37/1086 (3%)
Strand=Plus/Plus
Query 167 ATGATTTCTGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCAACCGCCAGGGATTTC 226
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1 ATGATTTCTGATTCGATCACCAACGCTTCTGCTACTTCAGCTCCAAGCGCGAGGGATTTC 60
Query 227 GGAAAAAAGAAAAGGACGAACAGGTCGGCCAAATTGAAACAGAGCAAGCTAGGTCTTCGT 286
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGAAAAAAGAAAAGGACGAACAGGTCGGCTAAATTGAAACAGAGCAAGCTAGGTCTTCGT 120
Query 287 CGTGAACAATGGCTTTCTCAAGTTGCGATGATTAACAAAGGGGATAAGGAGGAAATGGAA 346
||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 121 CGTGAGCAATGGCTTTCTCAAGTTGCGCTGATTAATAAAGGGGATAAGGAGGAAATGGAT 180
Query 347 TCCAATCGAAGAATTGGGAGTGAAAAGCCTGATCAGAGAGATCTTCCGCGTCCGGTGGAG 406
|| ||||||||||||||||| ||||||| |||||||||||| | ||||||||||||
Sbjct 181 TCGAATCGAAGAATTGGGAGGGAAAAGCTTGATCAGAGAGA---T---CGTCCGGTGGAG 234
Query 407 AATTTAGAT------G-AG-GA-TAACAATGGAACACATCGTCATGAGAGCTTTATTGAG 457
||||||||| | || || |||||||||||||||||||||||||||||||||||||
Sbjct 235 AATTTAGATGGGCAAGAAGAGACTAACAATGGAACACATCGTCATGAGAGCTTTATTGAG 294
Query 458 TCACTTTCTAATAGCCCTAACAGTATTCTTAGTGGCATGAATTCAATTCCTAATTTTAGC 517
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 295 TCACTTTCTAATAGCCCTAACAGCATTCTTAGTGGCATGAATTCAATTCCTAATTTTAGC 354
Query 518 AGCAGCAGTAGCAGTGGAAGTGGTGGCTCTTGCTCTGGTAATATAACAGAGGAGGAAGAT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGCAGCAGTAGCAGTGGAAGTGGTGGCTCTTGCTCTGGTAATATAACAGAGGAGGAAGAT 414
Query 578 GCTGATGATGATGGTTGTTTGGATGATTGGGAAGCTATTGCTGATGCTTTAGCTGCTGAT 637
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 415 GCTGATGATGATGGGTGCTTGGATGATTGGGAGGCTATTGCTGATGCTTTAGCTGCTGAT 474
Query 638 GATGAAAAGCATGAGAAAGAGAATCCTCCTGAGTCTTGCCAAGAGCATGAGGATATCAAG 697
|||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||
Sbjct 475 GATGAAAAGCATGAGAAACAGAATCCTCCTGAGTCCTGCGAAGAGCATGAGGATGTCAAG 534
Query 698 CAATCAGCTTTAAT-CG-GTGGAGCTGAT--GTGG-TTTTAAG-GGATGCAAAGGCGGAT 751
|||| || || | || | ||| | || |||| | | | | || |||||||||||||
Sbjct 535 CAATTGGC-TT-GTCCGAG-GGATTTAATCGGTGGATCTGATGTGGTTGCAAAGGCGGAT 591
Query 752 TCT-C-AG------A-GAAGGAAGCAAAAGAGTAACCAGGCGTGGAGGCCAGACGATAAG 802
| | | || | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 592 TGTCCGAGAACAATATCAAGGAAGCAGAAGAGTAACCAGGCGTGGAGGCCAGACGATAAG 651
Query 803 CTCCGTCCTCAGGGTCTGCCTAATTTGGAAAAGCAGCGTAGTTTTCCGGTCATGAATTTG 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CTCCGTCCTCAGGGTCTGCCTAATTTGGAAAAGCAGCGTAGTTTTCCGGTCATGAATTTG 711
Query 863 CATTTTAGTTCTGTGACTGTGGTGCCATCTTCGTGCCCTATTTGCTACGAAGATCTTGAC 922
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 712 CATTTTAATTCTGTGAC---AGTGCCATCTTCGTGCCCTATTTGCTACGAAGATCTTGAC 768
Query 923 TTAACAGACTCAAATTTCTTGCCATGTCCTTGTGGATTCCGGCTTTGCCTTTTCTGCCAC 982
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TTGACAGATTCAAATTTCTTGCCATGTCCTTGTGGATTCCGGCTTTGCCTTTTCTGCCAC 828
Query 983 AAGACGATATGCGATGGAGATGGGCGTTGTCCTGGTTGCAGAAAGCCTTATGAAAGGAAC 1042
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 829 AAGACGATATGCGATGGAGATGGGCGTTGTCCTGGTTGCAGAAAGCCATATGAAAGGAAC 888
Query 1043 ACAATCAAGTTTGAAGCTAGTGTTCAAGGTGGTGGTCTGACTATTCGGCTTGCTCGTTCG 1102
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACAATCAAGGTTGAGGCTAGTGTTCAAGGTGGTGGTCTGACTATTCGGCTTGCTCGTTCG 948
Query 1103 TCTAGCATGTTTTGCAGAGTGGTGTGTGAGTACATAAGGTGGTACACGAATTTCAAATAC 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TCTAGCATGTTTTGCAGAGTGGTGTGTGAGTACATAAGGTGGTACACGAATTTCAAATAC 1008
Query 1163 ATAAAA-GTTGCAATAAGTCTCTTTCTCATAGCCTGCGAGAACCTTGCTTATCTGTAATA 1221
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1009 ATAAAAAGTTGCAATAAGTCTCTTTCTCATAGCCTGCGAGAACCTTGCTTATCTATAATA 1068
Query 1222 CTCTAA 1227
|||||
Sbjct 1069 TTCTAA 1074
> Ahg496476 jgi|Araly1|496476|fgenesh2_kg.8__2292__AT5G62910.1
Length=1296
Score = 152 bits (82), Expect = 6e-36
Identities = 236/304 (78%), Gaps = 35/304 (12%)
Strand=Plus/Plus
Query 31 aaaaaTC-GCACGTttcttcttcttct-tctc---tctC--G-CAACAAATCTGTATTAG 82
||||||| ||||||||||| | |||| |||| |||| | || |||||||| |||||
Sbjct 1 AAAAATCTTCACGTTTCTTC-T-TTCTCTCTCGAGTCTCAAGCCACCAAATCTGAATTAG 58
Query 83 GGtttttgagaaatcttcat-ttcgtgattttgaaatttatttgt-atttgattttgttg 140
|||||||||| ||||||||| || ||| ||| ||||| || | | | | |||
Sbjct 59 GGTTTTTGAG-AATCTTCATCTT-TTGA-TTT-CAATTT-TTAATCA-CCCACTGTGTAA 112
Query 141 tt-gct--t-tgGAATCATCTG-CAACCACCATGATTTCTGATTCGATCACCAACGCTTC 195
|| || | ||| ||||||| || | ||||||||| ||||||||||||||||||||
Sbjct 113 TTCACTCGTCAGGATTCATCTGTGAA--ATCATGATTTCAGATTCGATCACCAACGCTTC 170
Query 196 TGCTACTTCAGCTCCAACCGCCAGGGATTTCGGAAAAAAGAAAAGGA-CGAACAGGTCGG 254
||||||||||||||||| | || ||| ||| || ||||| |||| | || | |||||
Sbjct 171 TGCTACTTCAGCTCCAA--G--AG--ATTCCGGGAAGAAGAAGAGGAAC-AATAAGTCGG 223
Query 255 CCAA-ATTGAAACAGAGCAAGCTAGGTCTTCGTCGTGAACAATGGCTTTCTCAAGTTGCG 313
| || || ||| |||| |||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 224 CTAAGAT-GAAGCAGAACAAGCTTGGTCTCCGTCGTGAGCAATGGCTTTCTCAAGTTGCG 282
Query 314 ATGA 317
|||
Sbjct 283 GTGA 286
> Ahg916316 jgi|Araly1|916316|Al_scaffold_0008_1067
Length=261
Score = 95.3 bits (51), Expect = 1e-18
Identities = 53/54 (98%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 254 GCCAAATTGAAACAGAGCAAGCTAGGTCTTCGTCGTGAACAATGGCTTTCTCAA 307
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 145 GCCAAATTGAAACAGAGCAAGCTAGGTCTTCGTCGTGAGCAATGGCTTTCTCAA 198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48873579594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5