BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48090.1
Length=2139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485169 jgi|Araly1|485169|fgenesh2_kg.5__1161__AT3G48090.1 3014 0.0
> Ahg485169 jgi|Araly1|485169|fgenesh2_kg.5__1161__AT3G48090.1
Length=2088
Score = 3014 bits (1632), Expect = 0.0
Identities = 1960/2114 (93%), Gaps = 40/2114 (2%)
Strand=Plus/Plus
Query 40 aaaaagagagaagaaagtccactaaagaaaagagaaTAGATATAGATCAATGGCGTTTGA 99
||||| |||||||||||||||| ||||||||||| || | |||||||||||||||||||
Sbjct 1 AAAAA-AGAGAAGAAAGTCCACAAAAGAAAAGAG-AT-CAGATAGATCAATGGCGTTTGA 57
Query 100 AGCTCTTACCGGAATCAATGGTGATCTAATCACCAG-ATCATGG-TCAGCCTCGAAGCAA 157
|||||||||||||||||||||||||||||||||| | ||||||| | |||||||||| ||
Sbjct 58 AGCTCTTACCGGAATCAATGGTGATCTAATCACC-GCATCATGGAT-AGCCTCGAAGAAA 115
Query 158 GCTTACCTAACCGAGCGCTATCACAAGGAAGAAGCA-GGAGCAGTCGTAATCTTCGCTTT 216
||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 116 GCTTACCAAACCGAGCGCTATCACAAGGAAGAAGCAGGGA-CAGTCGTAATCTTCGCTTT 174
Query 217 CCAACCATCTTTCTCAG-AGAAAGATTTCTTCGATCCGGAC-AATAAATCTTCCTTTGGA 274
|| |||||||||||| | | ||||||| || | ||||| | |||| |||||||||||||
Sbjct 175 CCGACCATCTTTCTCGGCCG-AAGATTTGTTTGCTCCGG-CTAATATATCTTCCTTTGGA 232
Query 275 GAAATCAAGTTGAACCGTGTTCAGTTTCCTTGTATGAGGAAAATCGGTAAAGGTGATGTA 334
||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 233 GAAATTAAGATGAAGCGTGTTCAGTTTCCTTGTATGAGGAAAATCGGCAAAGGTGATGAA 292
Query 335 GCTACTGTTAACGAAGCTTTCCTCAAGAATCTTGAAGCTATCATTGATCCAAGAACCTCA 394
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 293 GCTACTGTTAACGAAGCTTTCCTCAGGAATCTTGAAGTTATCATTGATCCAAGAACCTCA 352
Query 395 TTTCAAGCTTCTGTGGAAATGGCTGTGAGGAGTAGAAAACAGATAGTGTTCACAGGACAT 454
||| | |||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 353 TTTTATGCTTCTGTGGAAATGGCTGTCAGCAGCAGAAAGCAGATAGTGTTCACAGGACAT 412
Query 455 TCCTCAGGAGGTGCAACTGCAATCTTAGCAACAGTTTGGTATTTGGAGAAATACTTCATA 514
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TCCTCTGGAGGTGCAACTGCAATCTTAGCAACAGTTTGGTATTTGGAGAAATACTTCATA 472
Query 515 CGCAATCCAAATGTTTACCTTGAGCCTCGTTGTGTGACATTTGGAGCTCCTTTGGTTGGT 574
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 CGCAATCCGAATGTTTACCTTGAGCCTCGTTGTGTGACATTTGGAGCTCCTTTGGTTGGT 532
Query 575 GACTCTATCTTCAGTCACGCACTTGGGAGAGAAAAATGGAGCCGGTTCTTTGTGAACTTT 634
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 533 GACTCTATCTTCAGTCACGCACTTGGGAGAGAAAATTGGAGCCGGTTCTTTGTGAACTTT 592
Query 635 GTCTCAAGATTCGATATTGTCCCTCGGATTATGCTTGCTCGAAAGGCGTCTGTAGAGGAA 694
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 593 GTCACAAGATTCGATATTGTCCCTCGGATTATGCTTGCTCGAAAGGCGTCAATAGAGCAA 652
Query 695 ACTTTGCCTCATGTTCTTGCCCAATTGGATCCCAGAAAGTC-TTCCGTCCAAGAGAGTGA 753
||||||||||||||||||| |||||||||||||| ||| || |||| |||||||||||||
Sbjct 653 ACTTTGCCTCATGTTCTTGGCCAATTGGATCCCACAAA-TCCTTCCATCCAAGAGAGTGA 711
Query 754 ACAGAGAATAACAGAGTTTTACACAAGGGTGATGCGAGACACATCAACTGTTGCAAACCA 813
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 712 CCAGAGAATAACAGAGTTTTACACAACGGTGATGCGAGACACATCAACTGTTGCAAACCG 771
Query 814 AGCTGTTTGTGAATTGACTGGAAGCGCAGAGGCGTTTTTAGAGACCCTTTCTAGTTTCCT 873
|||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 772 AGCTGTCTGTGAATTGACTGGAAGCGCAGAGGCATTTTTAGAAACTCTTTCTAGTTTCCT 831
Query 874 TGAGCTAAGTCCTTATAGACCCGCCGGTACTTTTGTTTTCTCTACAGAGAAGAGATTGGT 933
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 832 TGAGCTAAGTCCTTATAGACCCGCCGGCACTTTTGTCTTCTCTACAGAGAAGAGATTGGT 891
Query 934 TGCAGTGAACAACTCGGACGCCATTCTTCAAATGCTGTTTTACACTTCTCAAGCCAGCGA 993
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 892 TGCAGTAAACAACTCGGACGCCATTCTTCAAATGCTTTTTTACACTTCTCAAGCTAGAGA 951
Query 994 TGAACAAGAATGGTCTCTAATTCCATTTCGAAGTATCAGAGATCATCATAGCTATGAGGA 1053
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 952 TGAACAAGAATGGTCTCTCATTCCAGTTCGAAGTATCAGAGATCATCATAGCTATGAGGA 1011
Query 1054 ACTGGTACAGTCGATGGGAAAGAAGTTGTTTAATCATTTGGATGGAGAAAACTCAATAGA 1113
|| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 1012 ACCGGTACAGTCAATGGGAATGAAGTTGTTTAATCATTTGGATGAAGAAAACTCGATAGG 1071
Query 1114 GTCTACGCTCAATGACCTTGGAGTGAGCACAAGAGGCAGACAGTACGTTCAAGCTGCATT 1173
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1072 GTCTACGCTCAATGACCTTGGAGTGAGCACAAGAGGCAGACAGTACGTTCTTGCTGCATT 1131
Query 1174 AGAGGAAGAGAAGAAACGAGTAGAGAATCAGAAGAAGATT-ATT-CAGGTGATCGAGCAA 1231
|||||||||||||||||||||||| ||||||||||||||| | || || | |||
Sbjct 1132 AGAGGAAGAGAAGAAACGAGTAGAAAATCAGAAGAAGATTGAAAACAAATGGCCT--CAA 1189
Query 1232 GAGAGGTTTTTAAAGAAACTAGCATGGATAGAAGATGAATACAAGCCAAAGTGTCAAGCC 1291
| || | |||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1190 -ATAG-T----AAAGGAACTATCATGGATAGAAAATGAATACAAGCCAAAGTGTCAAGCT 1243
Query 1292 CATAAAAAT-GGGTATTATGATTCCTTCAAAGTTTCAAATGAAGAGAATGACTTCAAAGC 1350
||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1244 CATAAAA-TCGGGTATTACGATTCTTTCAAAGTTTCAAATGAAGAGAATGACTTCAAAGC 1302
Query 1351 AAACGTCAAGAGAGCTGAGTTAGCCGGTGTTTTTGACGAGGTGCTTGGTTTAAT-GAAGA 1409
|||||||||||||||| ||||||||||| |||||||||||||||| |||||| | |||||
Sbjct 1303 AAACGTCAAGAGAGCTCAGTTAGCCGGTATTTTTGACGAGGTGCTAGGTTTA-TCGAAGA 1361
Query 1410 AATGTCAACTTCCAGATGAGTTCGAAGGGGACATAGATTGGATCAAGTTAGCAACTCGAT 1469
|| |||||||||||||||||||||| |||| || ||||||||| |||||||||||||||
Sbjct 1362 AAGGTCAACTTCCAGATGAGTTCGAGGGGGGCAGAGATTGGATGGAGTTAGCAACTCGAT 1421
Query 1470 ACCGCAGATTAGTTGAGCCTCTTGATATTGCAAACTACCATCGACATTTAAAGAACGAAG 1529
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 ACCGCAGATTAATTGAGCCTCTTGATATTGCAAACTACCATCGACATTTAAAGAACGAAG 1481
Query 1530 ACACAGGGCCGTACATGAAAAGAGGAAGACCAACCCGCTACATATATGCTCAGAGAGGCT 1589
|||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |
Sbjct 1482 ACACAGGGCCGTACATGAGAAGAGGAAGACCAAACCGCTACATATACGCTCAGAGAGGGT 1541
Query 1590 ACGAACATTATA-TACTGAAGCCA-AACGGAATGATTGCAGAAGATGTATTTTGGAACAA 1647
|||||||| ||| || |||||||| || |||| |||||||||||||||||||||||||||
Sbjct 1542 ACGAACAT-ATAATATTGAAGCCAGAA-GGAAGGATTGCAGAAGATGTATTTTGGAACAA 1599
Query 1648 GGTAAATGGTCTTAACTTAGGGTTACAGCTAGAAGAAATTCAAGAGACTCTAAAGAATTC 1707
||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||
Sbjct 1600 GGTAAATGGTCTTAACTTAGGGTTACAGC-A-A-GAAATTCAAGAGATTCTAAAGAATTC 1656
Query 1708 GGGATCCGAGTGCGGATCATGCTTTTGGGCTGAGGTTGAAGAACTCAAAGGAAAGCCATA 1767
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1657 GGGATCCAAGTGCGGATCATGCTTTTGGGCTGAGGTTGAAGAACTCAAGGGAAAGCCATA 1716
Query 1768 CGAGGAAGTTGAGGTAAGAGTTAAGACATTAGAAGGGATGCTTGGAGAATGGATCACAGA 1827
||||||||||||| ||||||||||||||||||||||| | |||| || |||||||| |||
Sbjct 1717 CGAGGAAGTTGAGATAAGAGTTAAGACATTAGAAGGGTTTCTTGAAGGATGGATCAGAGA 1776
Query 1828 CGGGGAGGTAGATGATAAGGAAATATTTCTGGAGGGTTCAACGTTTAGAAAGTGGTGGAT 1887
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1777 CGGGGAAGTAGATGATAAGGAAATATTTCTGGAGGGTTCAACATTTAGAAAGTGGTGGAG 1836
Query 1888 TACGCTTCCCAAAAATCACAAATCGCATTCTCCTCTGCGAGA-CTATATGATGGATGAAA 1946
||||||||| |||||||||||| ||||||||| |||||||| | |||||||||||||||
Sbjct 1837 TACGCTTCCTGAAAATCACAAATTGCATTCTCCGCTGCGAGAGC-ATATGATGGATGAAA 1895
Query 1947 TAACAGATACCTGAACCTTAGGTGGTGGAGTATTTAAGCTATTAGAA-CACTTGCTTCTC 2005
||| || ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 1896 TAAGAGCTACCTGAACCTTAAGTGGTGGAGTATTTAAGCTATT-GAAACACTTGCTTCTC 1954
Query 2006 TTAATTTGTGCAATAAGAAATGTTTATCAATCTGGTTTCCACTTCATGATGATCTTAGAA 2065
||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||
Sbjct 1955 TTAATTTGTGCAATAAGAAATGTCTATCAATCTTGTTTCCACTTCACGATGATCTTAGAA 2014
Query 2066 TAAGAAACATGTTGTATGATCATTGTGAAGTAATGTAATAGCTCTCTATTCTAATGTCAA 2125
|||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 2015 TAAGAAACATGTTGTATGATCATTGTAAAGTAATGTAATAGATCTCTATTCTAAAGTCAA 2074
Query 2126 ATTTGGTTTCCACT 2139
||||||||||||||
Sbjct 2075 ATTTGGTTTCCACT 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80484687685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5