BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48100.1
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937559 jgi|Araly1|937559|scaffold_501750.1 979 0.0
Ahg496477 jgi|Araly1|496477|fgenesh2_kg.8__2293__AT5G62920.1 425 3e-118
> Ahg937559 jgi|Araly1|937559|scaffold_501750.1
Length=593
Score = 979 bits (530), Expect = 0.0
Identities = 572/592 (97%), Gaps = 3/592 (1%)
Strand=Plus/Plus
Query 115 ACGATCCTACTCTTCTTGATATGGCTGAGGTTTTGCGTCCCGAGATGTTAGATATCTCTA 174
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ACGATCCTACTCTTCTTCATATGGCTGAGGTTTTGCGTCCGGAGATGTTAGATATCTCTA 60
Query 175 ACGACACTTCTTCATTAGCATCACCGAAACTTCTTCATGTTCTTGCTGTTGATGATAGTA 234
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 61 ACGACACTTCTTCATTAGCATCACCGGAACTTCTTCATGTTCTTGCCGTTGATGATAGCA 120
Query 235 TGGTTGATCGGAAGTTCATCGAGCGGTTACTCAGAGTCTCATCTTGTAAAGTTACTGTTG 294
|||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct 121 TGGTTGATCGGAAGTTCATCGAACGGTTGCTTAGAGTCTCTTCTTGTAAAGTTACTGTTG 180
Query 295 TCGATAGTGCGACAAGAGCTTTACAATATCTTGGATTAGATGGAGAGAATAATAGTTCGG 354
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TCGATAGTGCGACAAGAGCTTTACAATATCTTGGATTAGATGGAGAG---AATAGTTCGG 237
Query 355 TTGGATTTGAGGATCTGAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTGGATTTGAGGATCTGAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGA 297
Query 415 CTGGATATGAACTACTGAAGAAGATCAAAGAATCATCAGCTTTCAGAGAAATACCAGTTG 474
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTGGATATGAACTATTGAAGAAGATCAAAGAATCATCAGCTTTCAGAGAAATACCAGTTG 357
Query 475 TGATTATGTCTTCAGAGAACATCTTGCCTCGTATCGATAGATGTCTTGAAGAAGGAGCTG 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGATTATGTCTTCAGAGAACATCTTGCCTCGTATCGATAGATGTCTTGAAGAAGGAGCTG 417
Query 535 AAGATTTCTTATTGAAGCCTGTGAAATTAGCTGATGTGAAGAGATTAAGAGATTCTTTAA 594
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AAGATTTTTTATTGAAGCCTGTGAAATTAGCTGATGTGAAGAGATTAAGAGATTCTTTAA 477
Query 595 TGAAAGCTGAGGAAAGAGCTTTTAAGAATATTATGCACAAGAGAGAGCTTGAAGCTAATG 654
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 TGAAAGCTGAAGAAAGAGCTTTTAAGAATATTATGCACAAGAGAGAGCTCGAAGCTAATG 537
Query 655 ATATCTACTCGCAGCTAAAACGCGCAAAGATCTGAGTTTATCAGATTCCACG 706
|||||||||||||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 538 ATATCTACTCGCAGCTTAAACGTGCAAAGATCTGAGTTTACCATATTCCACG 589
> Ahg496477 jgi|Araly1|496477|fgenesh2_kg.8__2293__AT5G62920.1
Length=786
Score = 425 bits (230), Expect = 3e-118
Identities = 385/459 (84%), Gaps = 13/459 (3%)
Strand=Plus/Plus
Query 194 ATCACCGAAACTTCTTCATGTTCTTGCTGTTGATGATAGT-ATGGTTGATCGGAAGTTCA 252
||||||| | ||||||||||||||||| || ||||| ||| | ||||||||||| ||||
Sbjct 73 ATCACCGGATCTTCTTCATGTTCTTGCCGTCGATGACAGTCA-CGTTGATCGGAAATTCA 131
Query 253 TCGAGCGGTTACTCAGAGTCTCATCTTGTAAAGTTACTGTTGTCGATAGTGCGACAAGAG 312
| ||||| || ||||||||||| |||||||||||||||||||| || ||||| |||||||
Sbjct 132 TTGAGCGTTTGCTCAGAGTCTCTTCTTGTAAAGTTACTGTTGTTGACAGTGCAACAAGAG 191
Query 313 CTTTACAATATCTTGGATTAGATG--GAGAGAATAATAGTTCGGTTGGATTTGAGGATCT 370
|| | ||||||||||| || | || ||| ||| || | || ||||| ||| ||||| |
Sbjct 192 CTCTCCAATATCTTGGTTTGGGTGTTGAG-GAA-AA-A--TCCGTTGGTTTTCAGGATTT 246
Query 371 GAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGACTGGATATGAACTAC- 429
|||| |||| || || ||||| |||||||| ||||| || ||||||||||||||||| |
Sbjct 247 GAAGGTTAACTTAATTATGACTGATTACTCAATGCCCGGTATGACTGGATATGAACT-CT 305
Query 430 TGAAGAAGATCAAAGAATCATCAGCTTTCAGAGAAATACCAGTTGTGATTATGTCTTCAG 489
||||||||||||||||||| |||||||| ||| || |||| || ||||||||||| || |
Sbjct 306 TGAAGAAGATCAAAGAATCCTCAGCTTTTAGACAAGTACCGGTGGTGATTATGTCCTCTG 365
Query 490 AGAACATCTTGCCTCGTATCGATAGATGTCTTGAAGAAGGAGCTGAAGATTTCTTATTGA 549
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 366 AGAACATTTTGCCTCGTATTGATAGATGTCTTGAAGAAGGAGCTGAAGATTTCTTACTGA 425
Query 550 AGCCTGTGAAATTAGCTGATGTGAAGAGATTAAGAGATTCTTTAATGAAAGCTGAGGAAA 609
|||| || ||| | ||||||| || ||||||||||||||| ||||||||| ||| ||
Sbjct 426 AGCCAGTAAAACTCTCTGATGTAAAAAGATTAAGAGATTCTCTAATGAAAGTTGAAGATT 485
Query 610 GAGCTTTTA-AGAATATTATGCACAAGAGAGAGCTTGAA 647
|||||| | | || | ||| || ||||||||||| |||
Sbjct 486 TAGCTTTCACA-AAGAGTATTCAGAAGAGAGAGCTAGAA 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5