BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48120.1
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897654 jgi|Araly1|897654|Al_scaffold_0005_1620 1164 0.0
> Ahg897654 jgi|Araly1|897654|Al_scaffold_0005_1620
Length=963
Score = 1164 bits (630), Expect = 0.0
Identities = 886/1001 (89%), Gaps = 52/1001 (5%)
Strand=Plus/Plus
Query 81 ATGGAGGAAGAAAAAGCGGCAGCTTACTACGACGAGCTCACGCGTAAAGGAGAAGGAGCT 140
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAGGAGGAAAAAGCGGCAGCTTACTACGACGAGCTCACGCGTAAAGGAGGAGGAGCT 60
Query 141 GCTCGCTTCAAGCAAGGTCTCGGCTTCTCCACCGGAGCCAACGCTGTTCCGGAGAGAGGA 200
||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 61 GCTCGTTTCAAGCAAGGCCTCGGCTTCTCCACCGGAGCCAACGCCGTTCCGGATAGAGGA 120
Query 201 TCGGCGATCGCATCGTCGTCTTCGTTTCTCAACCAATTCGTCAAGGCTTCTAACCATACT 260
|||||||| |||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 121 TCGGCGATTGCATCGTCGTCTTCGTTTCTCAACCAGTTCGTCAAGG--------C-TACT 171
Query 261 AAATCCACTGATAACAAGGATTCCGAGATCCGGTCCATCAGAGATAAATTGAAGAAG--- 317
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 172 AAATCCACTGATAACAAGGATTCCGAGATCCGATCCATCAGAGATAAATTGAAGAAGAAT 231
Query 318 AAACCTGAAGAT------C--C-TAGGG-TGCCGGAGAGGAGCTATAGAGAGTCGAGTGA 367
|||||||||||| | | ||||| | |||||||| || || ||||| ||||||||
Sbjct 232 AAACCTGAAGATCAGCAACATCATAGGGCT-CCGGAGAGTAGGTACAGAGAATCGAGTGA 290
Query 368 ACGGCGTCGTTATCggagtagagagagggatgagagagataaaagccatagaaggagaag 427
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 291 ACGGCGTCGTTACCGGAGTAGAGAGAGGGATGAGAGAGATAAAAGCCATAGAAGCAGGAG 350
Query 428 caggagttcagagagaCGTAGTAGTTATGTGGATAGAGAGAGACGGAGAAGCAGGAGCAG 487
||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 351 CAGGAGTACAGAGAGACGTAGTAGGTATGGGGATAGAGAGAGACGGAGAAGCAGGAGTAG 410
Query 488 GAGTGCAGAGAGGCGTAATAGGTACGGGGATAGAGAGAGCCGGAGGAGGAGTAACCGAAG 547
|||||||||||||||||||||||| |||||||||||||| | ||||||| | ||
Sbjct 411 GAGTGCAGAGAGGCGTAATAGGTATGGGGATAGAGAGAGTC---GGAGGAG----C-AA- 461
Query 548 CAGAAGTTTGTCGCCGAGGAGAGAGCGGAGGAGCAGAGAAGATGTTAAGGAGAAGAAGCC 607
|| | | |||| | | || | | ||||||||||||||||||||||||
Sbjct 462 TAG-A--TCGTCG-C----------C-GA-G-G-AGAGAAGATGTTAAGGAGAAGAAGAT 503
Query 608 TGATTACTCGCGGTTAATCAAAGGCTACGATGAGATGTCAGCTGCTGAAAAAGTGAAAGC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 504 TGATTACTCGCGGTTAATCAAAGGCTACGATGAGATGTCAGCTGCTGAAAAAGTGAAGGG 563
Query 668 CAAGATGAAGCTTCAGCTTGATGAAACGGCTGAGAAAGATACCAGTAAGGGTGCAGGATG 727
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 564 CAAAATGAAGCTCCAGCTTGATGAAACTGCTGAGAAAGATACCAGTAAGGGTGCAGGATG 623
Query 728 GGAAAGATTTGAATTCGACAAAGAGGCCCCAGTTGATGATGAGGAACTAGAAGAAGGTGC 787
||||||||||||||| |||||||| || |||||||||||||| ||| ||||||||||| |
Sbjct 624 GGAAAGATTTGAATTTGACAAAGATGCTCCAGTTGATGATGAAGAAGTAGAAGAAGGTAC 683
Query 788 TGATGATGATGCTGCCTTGGTCAAGCGCATGGGACAAAGTTATAGGTTTTCCGCCATCGA 847
||| |||||||||||||| ||||||||||||||||| |||| |||||||||||| |||||
Sbjct 684 TGACGATGATGCTGCCTTAGTCAAGCGCATGGGACATAGTTTTAGGTTTTCCGCTATCGA 743
Query 848 GGCAAAAAGGGAAGAGCAGTTGAAAGCCGCCCACGATGAGGCCATGTTTGGAGTACCCA- 906
||| ||| |||||||||| | ||||||||||| ||||||||||||||||| | ||| |
Sbjct 744 GGCGAAACGGGAAGAGCAACTAAAAGCCGCCCATGATGAGGCCATGTTTGGTGCACC-AG 802
Query 907 CAGGCCAAACTCCTACCGAGAACACCGGCGATGATGTTACAGAGATAACTAATGTAAAGG 966
|||||||||||||||| | ||||||| |||| ||| |||||||| ||||||||| |||
Sbjct 803 CAGGCCAAACTCCTACAAATAACACCGACGATAATGGTACAGAGACAACTAATGTTGAGG 862
Query 967 ACGATGAAGGAGAAAGCAACAGTGGCGCGATAAGTCTTCTAAGTGAAAAGGTGCTTGCAA 1026
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 863 ACGATGAAGGAGAAAGCAACAGTGGCGCGATAAGTCTTCTTAGCGAGAAGGTGCTTGCAA 922
Query 1027 AACAGCAAGGATCTTGGCGTGACAGAGCTCGCAAGTCATGA 1067
|||| ||||||||||||||||||||||||||||||||||||
Sbjct 923 AACAACAAGGATCTTGGCGTGACAGAGCTCGCAAGTCATGA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5