BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48130.1

Length=177
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937563 jgi|Araly1|937563|scaffold_501754.1                        211    1e-54


> Ahg937563 jgi|Araly1|937563|scaffold_501754.1
Length=206

 Score =  211 bits (114),  Expect = 1e-54
 Identities = 157/178 (88%), Gaps = 2/178 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGCACTACATGCCTATTGTTCGTGAGACTCCAACAATGGAGCTCGTAAAGCTCACC  60
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  10   ATGAAACACTACATGCCTATTGTTCGTGAGACTCCAACAATGGAGCTTGTAAAGCTCACC  69

Query  61   GCTGAAATGAAATCCTTTGAGGCGTATAACACTCTTCGTGTAGCA-CGCACAATGAAGAG  119
             | || |||||||| || || || || || ||| | ||||||| | | ||||||||||||
Sbjct  70   CCCGACATGAAATCGTTCGAAGCTTACAAAACTATCCGTGTAG-AGCACACAATGAAGAG  128

Query  120  ACATGCAGGTGCTAGAGCGAAGAGGGCTTCAGAGGCTGAGAACGAAGAGAAGAAGTGA  177
            |||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||| |||
Sbjct  129  ACATGCCGGTGCTAGAGCCAAGAGGGCTGCAGAGGCTGAGAAAGAAGAGAAGAATTGA  186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5880992194


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5