BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48140.1
Length=632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485174 jgi|Araly1|485174|fgenesh2_kg.5__1166__AT3G48140.1 876 0.0
> Ahg485174 jgi|Araly1|485174|fgenesh2_kg.5__1166__AT3G48140.1
Length=605
Score = 876 bits (474), Expect = 0.0
Identities = 578/623 (93%), Gaps = 28/623 (4%)
Strand=Plus/Plus
Query 13 AATATAAAGTGAGGTCTTTTCTACGTCTCTTCAACATTCTCAGAG-AAGCCGTCTTCTTC 71
||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 AATATAAAGTGAGGTCTTTTCTACGTCTCTTCAACATTCTCAGAGAAAGCCG-------- 52
Query 72 CTCCTTCAATCTCTCTCGTTCGTATCATCTGCTCTGCGATTTCAATGGCGAGCCGTTGGT 131
| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||
Sbjct 53 -T-CTTCAATCTCTCTCTTTCGTATCATCTTCTCCGCGATTTCAATGGCGAGCCGTTGGT 110
Query 132 TGAGACCTGAGGTGTATCCTTTGTTCGCTGCTACCGGAGTTGCCGTTGGGATCTGTGCGT 191
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 111 TGAGACCTGAGGTGTATCCTTTGTTCGCTGCTACCGGAGTTGCCGTTGGGATCTGTGCTT 170
Query 192 TTTCCTTGATCAGAAACATCACCGGAAACCCTGAAGTCAGATGCACCAAGGAGAACAGGG 251
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 171 TTTCGTTGATCAGAAACATCACCGGAAACCCTGAAGTCAGATGCAATAAGGAGAACAGGG 230
Query 252 CTGCTGGAATTTTGGATAACCATGCAGAGGGAGAGAAGTATAAGGAAAATTTCCTGAGGA 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CTGCTGGAATTTTGGATAACCATGCAGAGGGAGAGAAGTATAAGGAAAATTTCCTGAGGA 290
Query 312 AGTTTGTTCGCAACAAGAAACCTGAAATCATGCCTGGACTCAACAAGTTCTTCACTGATC 371
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 291 AGTTTGTTCGCAATAAGAAACCTGAAATCATGCCAGGACTCAACAAGTTCTTCACTGATC 350
Query 372 CTACATACTGAAACCATCTTTGCACACCGCTTTGTCGTATTGTTTCTGGAATTGAATCTC 431
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 351 CTACATACTGAAACCATCTTTGCAGACCGCTTTGTCATATTGTTTCTGGAATTGAATCTC 410
Query 432 TTTGTGATATAAAACCGCATTTGTCAATTTCACATTGTTGATGTATCCTCCAGCTGAAGA 491
|| |||||||||| || |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 411 TT-GTGATATAAA-CCTCATTTGCCAATTTCACGTTGTTGATGTATCCTCCAGCTGAAGA 468
Query 492 CACTTGTTAATGCTGGGCTTATGTTGTCACTTTTAAGCAGAAAAT---T----GTATGAC 544
| |||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 469 C--TTGTTAATGCTGGGCTTATGTTGTCACTTTTAAGCAGAAAATAACTATTTGTATGAA 526
Query 545 TTGC-TTATGGCAGCATACTCTTTTAATGACCATCTCATCTGAGAGTAATAAGCACTTGA 603
|||| || |||||||||||| ||| |||| | |||||||||||||||||||||||||| |
Sbjct 527 TTGCCTT-TGGCAGCATACT-TTT-AATGGCAATCTCATCTGAGAGTAATAAGCACTT-A 582
Query 604 -TATCTTCAAATTGTCATGATTT 625
||||||||||||||||||||||
Sbjct 583 CTATCTTCAAATTGTCATGATTT 605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23140610619
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5