BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48150.1
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485175 jgi|Araly1|485175|fgenesh2_kg.5__1167__AT3G48150.1 3240 0.0
Ahg896116 jgi|Araly1|896116|Al_scaffold_0005_82 904 0.0
Ahg946853 jgi|Araly1|946853|scaffold_703082.1 846 0.0
Ahg941585 jgi|Araly1|941585|scaffold_602129.1 841 0.0
Ahg896117 jgi|Araly1|896117|Al_scaffold_0005_83 326 5e-88
> Ahg485175 jgi|Araly1|485175|fgenesh2_kg.5__1167__AT3G48150.1
Length=1928
Score = 3240 bits (1754), Expect = 0.0
Identities = 1872/1930 (97%), Gaps = 4/1930 (0%)
Strand=Plus/Plus
Query 4 TCTCTCCACGACGAAGAAGAGATTCTTCGATTCTTTTTTGAATAC-TTAAAGTTAAACTC 62
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1 TCTCTCCACGACGAAGAAGAGATTCTTCGATTCTTTTTTGAATACTTTTAAGTT-AACTC 59
Query 63 TCAGTTTCTGCTTCTGCTATGGTCTCTAAAGAGT-GTTGCCGAAACGAAATACGTGCGGC 121
|||||||||||||||||||||||||||||||| | |||| || |||||||| ||||||||
Sbjct 60 TCAGTTTCTGCTTCTGCTATGGTCTCTAAAGA-TAGTTGTCGCAACGAAATCCGTGCGGC 118
Query 122 TATTCGACAGCTTAGCGACCGCTGTTTATACTCCGCCGCAAAGTGGGCAGGAGAGCAGCT 181
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 119 TATTCGACAGCTTAGCGACCGTTGTTTATACTCCGCCGCAAAGTGGGCAGGAGAACAGCT 178
Query 182 TGTGGGGATAGAGCAAGACCCGTCTAATTTTACACCTGCGAATACGAGGTTTCAGCGAGG 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGTGGGGATAGAGCAAGACCCGTCTAATTTTACACCTGCGAATACGAGGTTTCAGCGAGG 238
Query 242 AAGCTCTAGCATCCGGAGAAGGTTCAGCACCAATGAATCTATTTCAACACCGTTACCTTC 301
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 239 AAGCTCTAGCATCCGGAGAAGGTTCAGCACCAATGAATCTATTTCAACACCATTACCTTC 298
Query 302 CGTTGGCTTCTCTCAAGCAGCTACTCCTCTCCCGGAAGAAGATGAAGCGATTGATGGTGA 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGTTGGGTTCTCTCAAGCAGCTACTCCTCTCCCGGAAGAAGATGAAGCGATTGATGGTGA 358
Query 362 CATTTACCTTTTAGCAAAGTCCTATTTTGATTGTCGAGAGTATAGACGGGCCTCCCATAT 421
| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 359 CTTTTACCTTTTAGCAAAGTCCTACTTTGATTGTCGAGAGTACAGACGGGCCTCCCATGT 418
Query 422 GCTTCGTGACCAAGTGAGCAAGAAATCACTGTTCTTGCGTTACTATGCGCTTTATCTGGC 481
||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 419 GCTTCGTGATCAAGTGAGCAAGAAATCAGTGTTCTTGCGTTACTATGCCCTTTATCTGGC 478
Query 482 TGGAGAAAAACGGAAAGAGGAAGAAATGATAGAACTTGAAGGCCCTTTGGGTAAGAGTGA 541
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGGGGAAAAACGGAAAGAAGAAGAAATGATAGAACTTGAAGGCCCTTTGGGTAAGAGTGA 538
Query 542 TGCCATAAACCGTGAACTGGTATCTTTGGAGAGGGATTTATCAGCTCTGAGGAGGACAGG 601
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 TGCCATAAACCGCGAACTGGTATCTTTGGAGAGGGACTTATCAGCTCTGAGGAGGACAGG 598
Query 602 AGCAATTGACTCTTTTGGATTATACTTGTATGGTGTGGTTCTTAAAGAAAAGGGAAATGA 661
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 AGCAATTGACTCTTTTGGATTATACTTGTATGGTGTGATTCTTAAAGAAAAGGGAAATGA 658
Query 662 AAGTCTTGCACGTGCCAGCCTTGTGGAGTCTGTCAACAGTTATCCTTGGAACTGGAGTGC 721
||||||||| || |||||||| ||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 659 AAGTCTTGCTCGGGCCAGCCTCGTGGAGTCTGTGAACAGCTATCCATGGAATTGGAGTGC 718
Query 722 CTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAACTTAAA 781
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||
Sbjct 719 CTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAGTCTTGAATAGCCTTAATTTAAA 778
Query 782 CAATCACTGGATGAAAGAGTTTTTTCTTGGCAATGCTTATCAAGAACTCAGAATGCACAC 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CAATCACTGGATGAAAGAGTTTTTTCTTGGCAATGCTTATCAAGAACTCAGAATGCACAC 838
Query 842 CGAGTCTTTGGCGAAGTACGAGTATTTGCAAGGTATTTTCAGTTTTAGCAATTACATCCA 901
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 839 CGAGTCTTTGGCGAAGTACGAGTATCTGCAAGGTATTTTCAGTTTTAGCAATTACATCCA 898
Query 902 AGCTCAAACTGCAAAAGCTCAGTATAGTCTTAGGGAATTCGACCAGGTTGAAATCATGTT 961
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 AGCTCAAACTGCAAAAGCTCAGTATAGTCTTAGGGAATTTGACCAGGTTGAAATCATGTT 958
Query 962 TGAAGAACTTCTGAGAAACGATCCATATCGGGTAGAAGATATGGATTTGTATTCTAATGT 1021
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 959 TGAAGAACTTCTGAGAAACGATCCCTATCGGGTGGAAGATATGGATTTGTATTCTAATGT 1018
Query 1022 TCTGTATGCAAAAGAAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGTTTTTGAC 1081
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1019 TCTGTATGCAAAAGAAGCATGTGCTGCGCTGAGTTATCTTGCACATAAGGTGTTTTTGAC 1078
Query 1082 TGATAAGTACAGACCTGAGTCTTGCTGCATCATTGGCAACTACTACAGTTTAAAAGGCCA 1141
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 TGATAAGTACAGACCTGAGTCTTGCTGCATCATTGGCAACTACTATAGTTTAAAAGGCCA 1138
Query 1142 GCATGAGAAAGCAGTTATGTATTTCCGGAGAGCTTTGAAACTGAACAAGAAGTATTTATC 1201
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1139 GCATGAGAAAGCAGTTATGTACTTCCGTAGAGCTTTGAAACTGAACAAGAAGTATTTATC 1198
Query 1202 TGCGTGGACTCTTATGGGCCATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGA 1261
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGCGTGGACTCTTATGGGACATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGA 1258
Query 1262 TGCATATCGACGAGCTGTTGATATAAACCCTACTGATTATCGAGCTTGGTATGGGTTAGG 1321
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 TGCATATCGACGAGCTGTTGATATAAACCCTTGTGATTATCGAGCTTGGTATGGGTTAGG 1318
Query 1322 ACAAGCATATGAGATGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCAT 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 ACAAGCATATGAGATGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCAT 1378
Query 1382 ATTCTTTCTTCCAAATGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGA 1441
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ATTCTTTCTTCCAAACGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGA 1438
Query 1442 ACAGCTTTACATGCTTGAAGAGGCCATCAAGTGTTACAAAAGAGCTGTGAACTGTACTGA 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ACAGCTTTACATGCTTGAAGAGGCCATCAAGTGTTACAAAAGAGCTGTGAACTGTACTGA 1498
Query 1502 CACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTGGACGTAATGA 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTGGACGTAATGA 1558
Query 1562 AGAAGCTGCATATTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAGGATTAGAAGG 1621
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGAAGCTGCATTTTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAGGATTAGAAGG 1618
Query 1622 ACCGAACATGTTTGAGGCTTTGGTTTTTCTTGCCACACATTTTAAAAATCACAAGAAATT 1681
||| ||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||
Sbjct 1619 ACCAAACATGTTTGAGGCTTTAGTTTTTCTTGCTACACATTTTAAAACTCACAAGAAGTT 1678
Query 1682 CGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGACCTGAAAAAGAAAA 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGACCTGAAAAAGAAAA 1738
Query 1742 GGCAAAGAGCTTACTCAGAGGGATCAGAATGGCGCAAACCGGTTTTCCTTCAATGGATCT 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GGCAAAGAGCTTACTCAGAGGGATCAGAATGGCGCAAACCGGTTTTCCTTCAATGGATCT 1798
Query 1802 CGAGCATTTTCCTATTTAGCTGTACTGTTCCGAATACTCAAAAGCTCTTTGAGAGAGAAT 1861
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1799 CGAGCATTTTCCTATTTAGCTGTACTGTTCCGAACACTCAAAAGCTCTTTGAGAGAGAAT 1858
Query 1862 GTCTCACATCATGTACACTATAAACCTTTGTACCAAGTTATATATTTCATCAAGATGATG 1921
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1859 ATCTCCCATCATGTACACTATAAACCTTTGTACCAAATTATATATTTCATCAAGATGATT 1918
Query 1922 CTCCTGTGAT 1931
|| |||||||
Sbjct 1919 CTTCTGTGAT 1928
> Ahg896116 jgi|Araly1|896116|Al_scaffold_0005_82
Length=564
Score = 904 bits (489), Expect = 0.0
Identities = 541/565 (96%), Gaps = 7/565 (1%)
Strand=Plus/Plus
Query 918 GCTCAGTATAGTCTTAGGGAATTCGACCAGGTTGAAATCATGTTTGA-AGAAC-TTCTGA 975
||||||||| ||||||||||||| ||||| ||||||||||||||| | ||||| || |||
Sbjct 1 GCTCAGTATTGTCTTAGGGAATTTGACCACGTTGAAATCATGTTT-AGAGAACATT-TGA 58
Query 976 GAAACGATCCATATCGGGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAG 1035
|||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 59 GAAACGATCCCTATCGGATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAG 118
Query 1036 AAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGAC 1095
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 119 AAGCATGTGCTGCGCTGAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGAC 178
Query 1096 CTGAGTCTTGCTGCATCATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAG 1155
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 179 CTGAGTCTTGCTGCATCATTAGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAGCAG 238
Query 1156 TTATGTATTTCCGGAGAGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTA 1215
||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 239 TTATGTACTTCCGGAGAGCTTTGAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTA 295
Query 1216 TGGGCCATGAATATGTTGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAG 1275
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 TGGGCCATGAATATGTTGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAG 355
Query 1276 CTGTTGATATAAACCCTACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGA 1335
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTGTTGATATAAACCCTTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGA 415
Query 1336 TGATGGGGATGCCTTTCTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAA 1395
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 416 TGATGGGGATGCCTTTCTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAA 475
Query 1396 ATGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGC 1455
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ACGATTCTCGGTTGTGGATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGC 535
Query 1456 TTGAAGAGGCCATCAAGTGTTACAA 1480
|||||||||||||||||||||||||
Sbjct 536 TTGAAGAGGCCATCAAGTGTTACAA 560
> Ahg946853 jgi|Araly1|946853|scaffold_703082.1
Length=1889
Score = 846 bits (458), Expect = 0.0
Identities = 509/533 (95%), Gaps = 5/533 (1%)
Strand=Plus/Plus
Query 933 AGGGAATTCGACCAGGTTGAAATCATGTTTGA-AGAACTTCTGAGAAACGATCCATATCG 991
|||||||| ||||| ||||||||||||||| | ||||| ||||||||||||||| |||||
Sbjct 1011 AGGGAATTTGACCACGTTGAAATCATGTTT-AGAGAACATCTGAGAAACGATCCCTATCG 1069
Query 992 GGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1051
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1070 GATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1129
Query 1052 GAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1111
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1130 GAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1189
Query 1112 CATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAGTTATGTATTTCCGGAG 1171
||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||
Sbjct 1190 CATTGGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAGCAGTTATTTACTTCCGGAG 1249
Query 1172 AGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTATGGGCCATGAATATGT 1231
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1250 AGCTTTAAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTATGGGCCATGAATATGT 1306
Query 1232 TGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1291
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 TGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1366
Query 1292 TACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1351
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TTGTGATTATCGAACTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1426
Query 1352 CTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAAATGATTCTCGGTTGTG 1411
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1427 CTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAAACGATTCTCGGTTGTG 1486
Query 1412 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1464
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1539
Score = 318 bits (172), Expect = 8e-86
Identities = 188/196 (96%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1533 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTA 1592
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1554 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTA 1613
Query 1593 GAGAGAATGGATGCTGAAGGATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTT 1652
|||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1614 GAGAGAATGGATGCTGAAGGATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTT 1673
Query 1653 GCCACACATTTTAAAAATCACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTT 1712
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1674 GCCACACATTTTAAAACTCACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTT 1733
Query 1713 CTCGATTATAGTGGAC 1728
||||||||||||||||
Sbjct 1734 CTCGATTATAGTGGAC 1749
Score = 255 bits (138), Expect = 7e-67
Identities = 153/160 (96%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 716 GAGTGCCTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAA 775
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 854 GAGTGCATGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAATCTTGAATAGCCTTAA 913
Query 776 CTTAAACAATCACTGGATGAAAGAGTTTTTT-CTTGGCAATGCTTATCAAGAACTCAGAA 834
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 914 TTTAAACAATCACTGGATGAAAGAGTTTTTTTCTTGGCAATGCGTATCAAGAACTCAGAA 973
Query 835 TGCACACCGAGTCTTTGGCGAAGTACGAGTATTTGCAAGG 874
||||||| | ||||||||||||||||||||||||||||||
Sbjct 974 TGCACACTGGGTCTTTGGCGAAGTACGAGTATTTGCAAGG 1013
> Ahg941585 jgi|Araly1|941585|scaffold_602129.1
Length=1733
Score = 841 bits (455), Expect = 0.0
Identities = 508/533 (95%), Gaps = 5/533 (1%)
Strand=Plus/Plus
Query 933 AGGGAATTCGACCAGGTTGAAATCAT-GTTTGAAGAACTTCTGAGAAACGATCCATATCG 991
|||||||| ||||| ||||||||||| ||| | ||||| ||||||||||||||| |||||
Sbjct 855 AGGGAATTTGACCACGTTGAAATCATGGTTAG-AGAACATCTGAGAAACGATCCCTATCG 913
Query 992 GGTAGAAGATATGGATTTGTATTCTAATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 1051
| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 914 GATGGAAGATATGGATTTGTATTCTTATGTTCTGTATGCAAAAGAAGCATGTGCTGCGCT 973
Query 1052 GAGTTACCTTGCACATAAGGTGTTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1111
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 974 GAGTTACCTTGCACATAAGGTGGTTTTGACTGATAAGTACAGACCTGAGTCTTGCTGCAT 1033
Query 1112 CATTGGCAACTACTACAGTTTAAAAGGCCAGCATGAGAAAGCAGTTATGTATTTCCGGAG 1171
||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1034 CATTGGCAACTACTACAATTTAAAAGGCCAGCATGAGAAAACAGTTATGTACTTCCGGAG 1093
Query 1172 AGCTTTGAAACTGAACAAGAAGTATTTATCTGCGTGGACTCTTATGGGCCATGAATATGT 1231
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1094 AGCTTTAAAACTGAAC---AAGTATTTATCGGCGTGGACTCTTATGGGCCATGAATATGT 1150
Query 1232 TGAGATGAAGAACACGCCTGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1291
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TGAGATGAAGAACACGCATGCTGCCATTGATGCATATCGACGAGCTGTTGATATAAACCC 1210
Query 1292 TACTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATATGAGATGATGGGGATGCCTTT 1351
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1211 TTGTGATTATCGAGCTTGGTATGGGTTAGGACAAGCATGTGAGATGATGGGGATGCCTTT 1270
Query 1352 CTATGCACTTCACTATTTTCGCAAATCCATATTCTTTCTTCCAAATGATTCTCGGTTGTG 1411
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1271 CTATGCACTTTACTATTTTCGCAAATCCATATTCTTTCTTCCAAACGATTCTCGGTTGTG 1330
Query 1412 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1464
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GATAGCCATGGCTAAATGTTATCAAACCGAACAGCTTTACATGCTTGAAGAGG 1383
Score = 318 bits (172), Expect = 8e-86
Identities = 188/196 (96%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 1533 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTA 1592
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1398 AAGCTTCACCAGAAGCTTGGACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTA 1457
Query 1593 GAGAGAATGGATGCTGAAGGATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTT 1652
|||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1458 GAGAGAATGGATGCTGAAGGATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTT 1517
Query 1653 GCCACACATTTTAAAAATCACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTT 1712
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1518 GCCACACATTTTAAAACTCACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTT 1577
Query 1713 CTCGATTATAGTGGAC 1728
||||||||||||||||
Sbjct 1578 CTCGATTATAGTGGAC 1593
Score = 244 bits (132), Expect = 1e-63
Identities = 151/160 (94%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 716 GAGTGCCTGGTCAGAGCTGCAGTCTCTGTGTACTTCGATCGAAATCTTGAATAGCCTTAA 775
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 698 GAGTGCATGGTCAGAGCTGCAGTCTCTGTGTACTTCGATTGAAATCTTGAATAGCCTTAA 757
Query 776 CTTAAACAATCACTGGATGAAAGAGT-TTTTTCTTGGCAATGCTTATCAAGAACTCAGAA 834
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 758 TTTAAACAATCACTGGATGAAAGAGTGTTTTTCTTGGCAATGCGGATCAAGAACTCAGAA 817
Query 835 TGCACACCGAGTCTTTGGCGAAGTACGAGTATTTGCAAGG 874
|||||| | ||||||||||||||||||||||||||||||
Sbjct 818 TGCACATTGGGTCTTTGGCGAAGTACGAGTATTTGCAAGG 857
> Ahg896117 jgi|Araly1|896117|Al_scaffold_0005_83
Length=282
Score = 326 bits (176), Expect = 5e-88
Identities = 218/237 (92%), Gaps = 8/237 (3%)
Strand=Plus/Plus
Query 1492 ACTGTACTGACACGGAAGGAATAGCACTTAATCAGCTGGCAAAGCTTCACCAGAAGCTTG 1551
||||||||||||| |||||||| ||||| | | | | |||||||||||||||||||
Sbjct 1 ACTGTACTGACACAAAAGGAATATCACTT-A--A--T--C-AAGCTTCACCAGAAGCTTG 52
Query 1552 GACGTAATGAAGAAGCTGCATATTACTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAG 1611
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 53 GACGTAATGAAGAAGCTGCATTTTATTTCGAGAAGGATTTAGAGAGAATGGATGCTGAAG 112
Query 1612 GATTAGAAGGACCGAACATGTTTGAGGCTTTGGTTTTTCTTGCCACACATTTTAAAAATC 1671
||||||||||||| |||| |||||||||||| |||||||||||||||||||||||| ||
Sbjct 113 GATTAGAAGGACCAAACAAGTTTGAGGCTTTAATTTTTCTTGCCACACATTTTAAAACTC 172
Query 1672 ACAAGAAATTCGAAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGAC 1728
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ACAAGAAATTCGCAGAAGCAGAAGTGTATTGCACCCGTCTTCTCGATTATAGTGGAC 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73933165545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5