BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48160.2
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485177 jgi|Araly1|485177|fgenesh2_kg.5__1169__AT3G48160.2 2169 0.0
> Ahg485177 jgi|Araly1|485177|fgenesh2_kg.5__1169__AT3G48160.2
Length=1709
Score = 2169 bits (1174), Expect = 0.0
Identities = 1422/1539 (92%), Gaps = 27/1539 (2%)
Strand=Plus/Plus
Query 11 AATTTTGGaaaagaaaaatg-aaaaagttgaacagaatcctgaaaatattgtaagaaatt 69
|||||||||||| ||||||| ||||||||||||||||||| ||||||| |||| |||||
Sbjct 1 AATTTTGGAAAATAAAAATGAAAAAAGTTGAACAGAATCCACAAAATATGGTAACAAATT 60
Query 70 ttctaaaccgaaaaaacaaaaagacaaaaaccaaaaaaTTGCGATCTGAACCGAGCACAA 129
|||| ||||||| |||| |||||| ||||||||||||||| |||||||||||||||||||
Sbjct 61 TTCTTAACCGAATAAAC-AAAAGAAAAAAACCAAAAAATTCCGATCTGAACCGAGCACAA 119
Query 130 AACCGTAAAGGTTTCAGCTTTACCAAAATTTAGAGGAGTGTGTAAATGTTACGGAGAAGG 189
||||||||| ||||||||||||||||||||| ||||||||| | | ||||||| ||||||
Sbjct 120 AACCGTAAAAGTTTCAGCTTTACCAAAATTTGGAGGAGTGT-T-ATTGTTACGAAGAAGG 177
Query 190 AGGAGCCAAAAAATTCAAATTGGCGCTCAAGTATCTTGGGAAATTCCCCCTCTCTCTTTT 249
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 178 AGGAGCCAAAAAATTCAAATTGGCGCTCAAGTATCTTCCCAAATTCCCCCTCTCTCATTT 237
Query 250 TAGGAAATCCCTCCAAAATACAATATCAAATTCTCAAT--C-GCAGACATCGTTTGCGTC 306
| |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 238 T-GGAAATCCCTCCAAAATACAATATCAAATTCTCAATCCCAGAAGACATCGTTTGCGTC 296
Query 307 AACCATGTCAGATCTATCGCCAGAAAGATTCAAACTTGCCGTTACTTCTCCTTCTTCCAT 366
|| ||||||||||||||| ||||||||| |||||||| || | | | |||||||
Sbjct 297 AATCATGTCAGATCTATCTCCAGAAAGACTCAAACTT-CC----C--AT--TACTTCCAT 347
Query 367 ACCGGAATCTTCTTCGGCTTTACAATTACACCATTCCTATAGTCGCAAACAGAAATCTCT 426
||||||||||||| | || | |||||||||||||||||||| ||||||||||||||
Sbjct 348 GCCGGAATCTTCTT---C-TT-C-TTTACACCATTCCTATAGTCGGAAACAGAAATCTCT 401
Query 427 CGGACTTCTTTGTACCAATTTCTTAGCTTTGTATAATCGAGAAGGGATTGAAATGGTTGG 486
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 402 CGGACTTCTTTGTACCAATTTCTTAGCTTTGTATAATCGAGATGGGATTGAAATGATTGG 461
Query 487 GCTTGATGATGCTGCCTCGAAATTAGGAGTGGAGAGACGAAGAATCTATGATATTGTTAA 546
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GCTTGATGATGCTGCTTCGAAATTAGGAGTGGAGAGACGAAGAATCTATGATATTGTTAA 521
Query 547 TGTTCTGGAGAGTGTTGGGGTTTTAACAAGAAGAGCAAAGAATCAGTATACGTGGAAAGG 606
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TGTGCTGGAGAGTGTTGGGGTTTTAACAAGAAGAGCAAAGAATCAGTATACGTGGAAAGG 581
Query 607 GTTTTCCGCAATTCCAGGAGCATTGAAGGAGCTACAAGAAGAGGGGGTTAAGGACACTTT 666
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 582 GTTTGCCGCAATTCCAGGAGCATTGAAGGAGCTACAAGAAGAAGGGGTTAAGGACACTTT 641
Query 667 TCATCGTTTCTATGTCAATGAGAATGTTAAAGGATCTGATGATGAGGATGATGATGAAGA 726
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 642 TCATCGTTTCTATGTGAATGAGAATGTTAAAGGATCTGATGATGAGGATGATTATGAAGA 701
Query 727 GTCTTCTCAGCCTCACTCTAGTAGCCAGACTGATAGTTCAAAACCTGGTTCTCTTCCCCA 786
|||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 702 GTCTTCTCAGCCCCATTCTAGTAGCCAAACTGATAGTTCAAAACCTGGCTCTCTTCCCCA 761
Query 787 ATCTTCAGATCCCTCCAAAATAGATAACCGACGAGAGAAATCTTTAGGATTGCTTACTCA 846
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 762 ATCTTCAGATCCCTCAAAAATAGATAATCGACGAGAGAAATCTTTAGGATTGCTTACTCA 821
Query 847 GAACTTTATCAAACTCTTTATTTGCTCTGAAGCTATTAGGATCATCTCCCTTGATGACGC 906
||||||||||||||||||||||||||| ||| |||||| ||||| |||||||| || ||
Sbjct 822 GAACTTTATCAAACTCTTTATTTGCTCCGAATTTATTAGAATCATTTCCCTTGACGAGGC 881
Query 907 TGCAAAATTACTGCTTGGTGATGCCCACAATACATCAATAATGCGAACTAAAGTGAGGCG 966
||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||
Sbjct 882 TGCAAAATTACTGCTCGGTGATGCCCACAATACATCGATAATGAGAACAAAAGTGAGGCG 941
Query 967 GCTTTATGATATAGCAAATGTCTTGTCGTCAATGAATCTCATAGAGAAGACTCACACCTT 1026
|||||||||||| ||||||||| |||| || |||||||| || |||||||||||||||||
Sbjct 942 GCTTTATGATATTGCAAATGTCCTGTCATCTATGAATCTTATCGAGAAGACTCACACCTT 1001
Query 1027 AGATTCTAGGAAACCAGCTTTCAAGTGGTTAGGGTACAATGGTGAGCCTACTTTCACACT 1086
||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1002 AGATTCTCGAAAACCAGCTTTCAAGTGGTTAGGATACAATGGTGAGCCTACTTTCACGTT 1061
Query 1087 GAGCAGCGATTTGTTGCAATTGGAGTCAAGAAAAAGAGCTTTCGGAACTGATATTACAAA 1146
||||||||||||| ||| | |||| ||||||||||||||||||||||||||| |||| ||
Sbjct 1062 GAGCAGCGATTTGATGCTACTGGAATCAAGAAAAAGAGCTTTCGGAACTGATCTTACTAA 1121
Query 1147 CGTCAATGTTAAGAGAAGCAAATCATCATCTTCGTCCCAAGAAAACGCTACAGAGAGAAG 1206
|| ||||| |||||||||||||| |||||||| |||||||||| |||||||||||||
Sbjct 1122 TGTTAATGTCAAGAGAAGCAAATCGTCATCTTCCTCCCAAGAAATTGCTACAGAGAGAAA 1181
Query 1207 GCTAAAGATGAAAAAGCACTCAACACCAGAGAGTTCTTATAACAAAAGCTTTGATGTTCA 1266
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GCTAAAGATGAAAAAACACTCAACACCAGAGAGTTCTTATAACAAAAGCTTTGATGTTCA 1241
Query 1267 TGAATCAAGACATGGATCAAGAGGAGGTTACCATTTTGGACCTTTTGCACCAGGCACTGG 1326
|||| ||||||||||||| | | ||||||| |||||||| ||||||||||||||||||||
Sbjct 1242 TGAACCAAGACATGGATC-A-A-GAGGTTATCATTTTGGTCCTTTTGCACCAGGCACTGG 1298
Query 1327 TACATATCCAACTGCTGGTTTAGAGGATAACTCTAGGAGAGCTTTTGATGTTGAGAATCT 1386
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1299 TACATATCCAAGAGCTGGTTTGGAGGACAACTCTAGGAGAGCTTTTGATGTTGAGAATCT 1358
Query 1387 GGATTCTGATTACCGTCCCTCTTACCAAAACCAAGTTTTGAAAGACCTCTTTTCCCATTA 1446
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 GAATTCGGATTACCGTCCCTCTTACCAAAACCAAGTTTTGAAAGACCTCTTTTCCCATTA 1418
Query 1447 CATGGATGCTTGGAAGACATGGTTCAGCGAAGTCACCCAGGAGAATCCATTACCTAATAC 1506
||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 1419 CATGGATGCTTGGAAGACATGGTACAGCGAAGTCACCCAGAAGAATCCATTACCAAATAC 1478
Query 1507 ATCACAACACCGTTAGAtcttctttttcttcttcttctt 1545
|||||||||||||||||||||||| |||||||||| |||
Sbjct 1479 ATCACAACACCGTTAGATCTTCTTCTTCTTCTTCT-CTT 1516
Score = 339 bits (183), Expect = 6e-92
Identities = 209/220 (95%), Gaps = 7/220 (3%)
Strand=Plus/Plus
Query 1557 tcttcttcttcttcttctcttACCTGTGAACATCAATCATCATTCGTGTAGAGAGCTTCA 1616
|||||||||||||||||||||||||||| | | | |||||||||||| ||||||||||||
Sbjct 1496 TCTTCTTCTTCTTCTTCTCTTACCTGTG-A-A-C-ATCATCATTCGTATAGAGAGCTTCA 1551
Query 1617 AGAGTCATTTCTTTTGATCAATGTGGTTTAGTTTCTCCACACAATTGTAACTGCAAGAAT 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AGAGTCATTTCTTTTGATCAATGTGGTTTAGTTTCTCCACACAATTGTAACTGCAAGAAT 1611
Query 1677 CCGACATTAATTCACAGATCGCATACCCTCTTTGCTTTCTGAAGTTTACTGTAGGCTGTA 1736
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1612 CCGACATTAATTCACAGATCGCATACCCTCTTTGCTTTCTGAAGTTC-CTGTAGGCTATA 1670
Query 1737 ACTTTTGT-ATGTTACATATAAGAGCATTCATCTTTCGCC 1775
|||||||| | ||||||||||||||||||||||||| |||
Sbjct 1671 ACTTTTGTGA-GTTACATATAAGAGCATTCATCTTTTGCC 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66619838505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5