BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48170.1
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937567 jgi|Araly1|937567|scaffold_501758.1 2579 0.0
Ahg926872 jgi|Araly1|926872|scaffold_202433.1 826 0.0
> Ahg937567 jgi|Araly1|937567|scaffold_501758.1
Length=1552
Score = 2579 bits (1396), Expect = 0.0
Identities = 1495/1544 (97%), Gaps = 2/1544 (0%)
Strand=Plus/Plus
Query 80 agagagagagTATGGCGATTACGGTGCCGAGACGGCAACTCTTCATCGGCGGTCAATGGA 139
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 AGAGAGATAGTATGGCGATTACGGTGCCGAGACGGCAACTCTTCATCGGCGGTCAATGGA 69
Query 140 CTGAGCCCGTTCTCCGTAAAACTCTCCCTGTTGTCAATCCCGCCACCGAAGACATCATCG 199
|||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 70 CTGAGCCCGTTCGCCGTAAAACTCTCCCTGTCGTCAATCCCGCCACCGAAGATATCATCG 129
Query 200 GTTATATTCCAGCTGCAACTTCTGAAGATGTGGAGCTTGCTGTGGAAGCTGCTAGGAAAG 259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 130 GTTATATTCCAGCTGCAACTTCTGAAGATGTGGAGCTCGCTGTGGAAGCTGCTAGGAAAG 189
Query 260 CATTTACTAGGAACAACGGAAAGGATTGGGCTAGAGCAACTGGTGCTGTTCGTGCCAAAT 319
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 190 CATTTACTAGGAACAACGGAAAGGATTGGGCTAAAGCATCTGGTGCTGTTCGTGCCAAAT 249
Query 320 ACTTGCGCGCTATTGCAGCTAAGGTAATAGAGAGGAAGTCTGAACTAGCTAATCTTGAGG 379
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ACTTGCGTGCTATTGCAGCTAAGGTAATAGAGAGGAAGTCTGAACTAGCTAATCTTGAGG 309
Query 380 CTATTGATTGCGGTAAACCTCTAGATGAAGCAGCATGGGACATGGATGATGTTGCTGGAT 439
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CGATTGATTGTGGTAAACCACTAGATGAAGCAGCATGGGACATGGATGATGTTGCTGGAT 369
Query 440 GTTTTGAATATTATGCTGACCTAGCTGAAGGCTTGGATGCAAAGCAGAAGACTCCTCTTT 499
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 370 GTTTTGAATATTATGCTGACCTAGCTGAAGGCTTGGATGCAAAGCAGAAGGCTCCTCTTT 429
Query 500 CTCTTCCGATGGATACTTTTAAGGGTTATATTCTCAAGGAACCCATTGGCGTAGTT-GGC 558
|||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 430 CTCTACCGATGGATACTTTTAAGGGTTATATTCTCAAGGAACCTATTGGTGTAGTTGGGC 489
Query 559 ATGATTACTCCATGGAACTATCCGTTATTGATGGCTGTCTGGAAAGTCGCTCCTTCACTT 618
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 490 -TGATTACTCCATGGAACTATCCGTTATTGATGGCTGTCTGGAAAGTTGCTCCTTCACTT 548
Query 619 GCTGCTGGGTGCACGGCTATACTGAAACCTTCAGAGTTGGCCTCCCTGACATGTTTGGAG 678
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GCTGCTGGGTGCACAGCAATACTGAAACCTTCAGAGTTGGCCTCCCTGACATGTTTGGAG 608
Query 679 CTCGCTGATATTTGCCGCGAGGTGGGTCTACCACCTGGTGTTCTTAATATTCTGACTGGT 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CTCGCTGATATTTGCCGCGAGGTGGGTCTACCACCTGGTGTTCTTAATATTCTGACTGGT 668
Query 739 TTAGGAACTGAAGCAGGTGCTCCACTGGCATCGCATCCACATGTTGACAAGATTGTATTC 798
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 669 TTAGGAACTGAAGCAGGTGCTCCGCTGGCATCGCATCCACATGTTGACAAGATTGTATTC 728
Query 799 ACTGGAAGCACAACAACTGGAAGCAGCATTATGACTTCCGCTGCCAAATTGGTGAAACCA 858
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 729 ACTGGAAGCACAACAACTGGAAGCAGCATTATGACTTCCGCTGCCAAATTGGTTAAACCT 788
Query 859 GTTTCCTTGGAGCTTGGGGGTAAAAGCCCTATCATTGTCTTTGATGATGTCGATATTGAT 918
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 789 GTTTCCTTGGAGCTTGGGGGGAAAAGCCCTATCATTGTCTTTGATGATGTTGATATTGAT 848
Query 919 AAAGCTGTGGAATGGACTATGTTTGGTTGTTTCTGGACGAATGGGCAGATTTGTAGTGCC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 849 AAAGCTGTGGAATGGACTATGTTTGGTTGTTTCTGGACGAATGGGCAGATTTGCAGTGCC 908
Query 979 ACATCTCGACTTCTTGTGCATGAAAGGATTGCTGACGAGTTTTTGGACAAGCTGGTAAAG 1038
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 909 ACATCTCGACTTCTCGTGCATGAAAGGATTGCTGACGAATTTTTGGACAAGCTGGTAAAG 968
Query 1039 TGGACCAAGAACATTAAGATTTCAGATCCTTTTGAAGAAGGCTGTAGGCTTGGTCCTGTT 1098
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 TGGACAAAGAACATTAAGATTTCAGATCCTTTTGAAGAAGGCTGTAGGCTTGGTCCTGTT 1028
Query 1099 GTCAGTAAAGGACAGTACGAGAGAGTTCTAAAGTTTGTCTCAAACGCTAGGAATGAAGGT 1158
||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1029 GTCAGCAAAGGACAGTACGACAGAGTTCTGAAGTTTGTCTCAAACGCTAGTAATGAAGGT 1088
Query 1159 GCAACTGTTCTTTGTGGAGGAGTTCGTCCTGAGCATTTAAAGAAGGGATACTTTGTTGAA 1218
|||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1089 GCAACTGTCCTTTGTGGAGGAACTCGCCCTGAGCATTTAAAGAAGGGATACTTTGTTGAA 1148
Query 1219 CCTGCGATTGTTTCAAATGTGACTACTTCAATGGAAATCTGGAGAGAGGAAGTCTTTGGT 1278
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 CCTGCGATTATTTCAAATGTGACTACTTCAATGGAAATCTGGAGAGAGGAAGTCTTTGGT 1208
Query 1279 CCTGCTCTGTGTGTGAAAACATTCTCCACCGAGGATGAGGCAATTCAGCTTGCAAATGAC 1338
|||||||||||||| |||||||| ||||| ||||||||||||||| |||| |||||||||
Sbjct 1209 CCTGCTCTGTGTGTCAAAACATTTTCCACAGAGGATGAGGCAATTGAGCTGGCAAATGAC 1268
Query 1339 TCTCAATATGGATTAGCAGGCGCAGTATTATCAAATGATCTGGAGCGGTGTGATCGTGTT 1398
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1269 TCTCAATATGGATTAGCCGGCGCAGTATTATCAAATGATCTGGACCGCTGTGATCGTGTT 1328
Query 1399 AGTAAGGCTTTCCAGGCGGGAATAGTGTGGGTCAACTGCTCTCAGCCATGCTTCTGCCAA 1458
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1329 AGTAAGGCTTTCCAGGCGGGAATAGTATGGGTCAACTGCTCTCAGCCATGCTTCTGCCAA 1388
Query 1459 GCTCCATGGGGTGGAACCAAACGCAGTGGATTTGGCCGTGAATTGGGAGAATGGGGACTT 1518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 GCTCCATGGGGTGGAACCAAACGCAGTGGATTTGGCCGTGAATTGGGAGAATGGGGACTT 1448
Query 1519 GAGAACTACTTGAGTGTGAAGCAGGTGACTCAGTATATCTCTGATGAACCATGGGGATGG 1578
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1449 GAGAACTACTTGAGTGTGAAGCAGGTGACACAGTATATCTCTGATGAACCATGGGGATGG 1508
Query 1579 TACAAACCTCCTTCCAAGCTCTGAGACAAACACTAGTTCCTGAT 1622
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1509 TACAAACCTCCTTCCAAGCTCTGAGACAAACACTACTTCCTGAT 1552
> Ahg926872 jgi|Araly1|926872|scaffold_202433.1
Length=1591
Score = 826 bits (447), Expect = 0.0
Identities = 1121/1442 (78%), Gaps = 64/1442 (4%)
Strand=Plus/Plus
Query 175 AATCCCGCCACCGAAGACATCATCGGTTATATTCCAGCTGCAACTTCTGAAGATGTGGAG 234
||||| || || ||||| |||| ||| ||||||| || || || | || || ||||||
Sbjct 150 AATCCGGCTACTGAAGAGGTCATTGGTGATATTCCTGCAGCTACAACGGAGGACGTGGAG 209
Query 235 CTTGCTGTGGAA-GCTGCTAGGAA-AGCATTTACTAGGAA-CAACGGAAAGGATTGGGCT 291
|||| || || |||||| ||| ||||||| | ||||| || ||||| ||||||||
Sbjct 210 GTTGCAGT-CAACGCTGCT-CGAAGAGCATTTTCAAGGAATAAAGGGAAA-GATTGGGCC 266
Query 292 AGAGCAACTGGTGCTGTTCGTGCCAAATACTTGCGCGCTATTGCAGCTAAGGT-AATAGA 350
| |||| |||| ||||||||||| || | || || |||||||| |||||||| ||| ||
Sbjct 267 AAAGCACCTGGAGCTGTTCGTGCTAAGTTTTTACGTGCTATTGCTGCTAAGGTAAAT-GA 325
Query 351 GAGGAAGTCTGAACTAGCTAATCTTGAGGCTATTGATTGCGGTAAACC-TCTAGATGAAG 409
|| ||| | || || || || || ||||| ||||||| |||||||| | | |||||||
Sbjct 326 AAGAAAGACGGATCTGGCAAAGCTCGAGGCGCTTGATTGTGGTAAACCAT-TGGATGAAG 384
Query 410 CAGCATGGGACATGGATGATGTTGCTGGATGTTTTGAATATTATGCTGACCTAGCTGAAG 469
||| ||||| |||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 385 CAGTGTGGGATATGGATGATGTTGCTGGATGTTTTGAATTTTATGCTGACCTTGCTGAAG 444
Query 470 GCTTGGATGCAAAGCAGAA-GACTCCTCTTTCTCTTCCGATGGATACTTTTAAGGGTTAT 528
| || ||||| |||||||| | | || | || ||||| ||||| | ||||||| ||| |
Sbjct 445 GATTAGATGCTAAGCAGAAAG-CACCAGTCTCGCTTCCCATGGAGAGTTTTAAGAGTTTT 503
Query 529 ATTCTCAAGGAACC-CATTGGCGTAGTTGG-CATGATTACTCCATGGAACTATCCG-TTA 585
|||| ||| |||| | |||| || || || | | ||||| |||||||| || || ||
Sbjct 504 GTTCTGAAGCAACCTC-TTGGAGTTGTGGGACTT-ATTACACCATGGAATTACCCCCTT- 560
Query 586 TTGATGGCTGTCTGGAAAGTCGCTCCTTCACTTGCTGCTGGGTGCACGGCTATACTGAAA 645
||||||||||| ||||| || ||||||||||||||||| |||||||| || | || ||
Sbjct 561 TTGATGGCTGTTTGGAAGGTGGCTCCTTCACTTGCTGCAGGGTGCACTGCGGTTCTCAAG 620
Query 646 CCTTCAGAGTTGGCCTCCCTGACATGTTTGGAGCTCGCTGATATTTGCCGCGAGGTGGGT 705
|| |||||| |||| || | || ||||||||||| ||||||||||| || || || |||
Sbjct 621 CCATCAGAGCTGGCATCTGTTACTTGTTTGGAGCTTGCTGATATTTGTCGAGAAGTTGGT 680
Query 706 CTACCACCTGGTGTTCTTAATATTCTGACTGGTTTAGGAACTGAAGCAGGTGCTCCACTG 765
|| || ||||| || || ||| || ||||||||||||| | ||||| |||||| | ||
Sbjct 681 CTTCCTCCTGGGGTCCTCAATGTTTTGACTGGTTTAGGTTCGGAAGCTGGTGCTTCTTTG 740
Query 766 GCATCGCATCCAC--ATGTTGACAAGATTGTATTCACTGGAAGCACAACAACTGGAAGCA 823
||||| || || | | || |||||||||| ||| |||||||| | || ||||| |
Sbjct 741 GCATCACACCC-CGGA-GTGGACAAGATTGCATTTACTGGAAGTTTTGCCACAGGAAGTA 798
Query 824 -GCATTATGACTTCCGCTGC-CAAATTGGTGAAACCAGTTTCCT-TGGAGCTTGG-GGGT 879
| | ||||| | ||||| || |||||||| || ||||| | |||| ||||| |||
Sbjct 799 AGG-TCATGACAGCTGCTGCTCAG-TTGGTGAAGCCTGTTTC-TATGGAACTTGGTGGG- 854
Query 880 AAAAGCCCTATCATTGTCTTTGATGATGTCGATATTGATAAAGCTG-TGGAATGGACTAT 938
|| |||||| ||||||| |||||||| || ||| |||||||||||| || ||||| || |
Sbjct 855 AAGAGCCCTCTCATTGTGTTTGATGACGTTGATCTTGATAAAGCTGCTG-AATGGGCTCT 913
Query 939 GTTTGGTTGTTTCTGGACGAATGGGCAGATTTGTAGTGCCACATCTCGACTTCTTGTGCA 998
|| ||||| |||||||| ||||| ||||| || ||||| || || || |||||||| ||
Sbjct 914 CTTCGGTTGCTTCTGGACAAATGGTCAGATCTGCAGTGCAACTTCCCGTCTTCTTGTTCA 973
Query 999 TGAAAGGATTGC-TGACGAGTTTTTGGACAAGCTGGTAAAGTGGACCAAGAACATTAAGA 1057
|||||| || || | || ||| | || ||||| |||||||||| ||||||||||| |
Sbjct 974 TGAAAGCATCGCATCT-GAATTTATAGAAAAGCTTGTAAAGTGGAGTAAGAACATTAAAA 1032
Query 1058 TTTCAGATCCTTTTGAAGAAGGCTGTAGGCTTGGTCCTGTTGTCAGTAAAGGACAGTACG 1117
||||||| || | |||||||| || |||||||||||||| || || ||||||||||||
Sbjct 1033 TTTCAGACCCCATGGAAGAAGGATGCAGGCTTGGTCCTGTCGTGAGCCAAGGACAGTACG 1092
Query 1118 AGAGAGTTCTA-AAGTTTGTCTCAA-ACGCTAGGAATGAAGGTGCAACTGTTCTTTG--T 1173
||| || | | |||||| ||||| | |||| || |||||| ||||| | |||| | |
Sbjct 1093 AGA-AGATATTGAAGTTTATCTCAGCA-GCTAAGAGTGAAGGAGCAAC-GATCTT-GCAT 1148
Query 1174 GGAGGAGT-TCGTCCTGAGCAT-TTAAAGAAGGGATACTTTGTTGAACCTGCGATTGTTT 1231
|| || | ||| ||||||||| || || ||||| | ||| ||||||| | || |
Sbjct 1149 GGTGGT-TCTCGACCTGAGCATCTTGAA-AAGGGCTTCTTCATTGAACCAACCATCATAA 1206
Query 1232 CAAATGTGACTACTTCAATGGAAATCTGGAGAGAGGAAGTCTTTGGTCCTGCTCTGTGTG 1291
| |||| || ||||||||| ||||||||||||| ||||| ||||| |||| ||| || |
Sbjct 1207 CTGATGTAACCACTTCAATGCAAATCTGGAGAGAAGAAGTTTTTGGGCCTGTTCTTTGCG 1266
Query 1292 TGAAAACATTCT-CCACCGAGGATGAGGCAATTCAGCTTGCAAATGACTCTCAATATGGA 1350
|||||||||| | ||| ||||| ||||||||| |||| ||||||||||| || || |||
Sbjct 1267 TGAAAACATT-TGCCAGTGAGGACGAGGCAATTGAGCTAGCAAATGACTCCCATTACGGA 1325
Query 1351 TTAGCAGGC-GCAGT-ATTATCAAATGAT-CTGGAGCGGTGTGATCGTGTTAGTAAGGC- 1406
||| || | ||||| || ||| ||||| | | | | ||||| ||||| || ||||
Sbjct 1326 CTAGGAG-CTGCAGTGAT-ATCTAATGACACAGAAA-GATGTGACCGTGTAAGCGAGGCC 1382
Query 1407 TTTCCAGGC-GGGAATAGTGTGGGTCAACTGCTCTCAGCCATGCTTCTGCC-AAGCTCCA 1464
||| || | |||| | || ||| | |||||||| ||||| ||||| | || |||| |||
Sbjct 1383 TTTGAAG-CTGGGATT-GTCTGGATTAACTGCTCGCAGCCTTGCTT-TACCCAAGCCCCA 1439
Query 1465 TGGGGTGGAACCAAACGCAGTGGATTTGGCCGTGAA-TTGGGAGAATGGGGACTTGAGAA 1523
|||||||| ||||||||||| ||||| || ||| |||| ||||||||||||||| ||
Sbjct 1440 TGGGGTGGTGTAAAACGCAGTGGGTTTGGACGAGAACTTGG-AGAATGGGGACTTGATAA 1498
Query 1524 CTACTTGAGTGTGAAGCAGGTGACTCAGTATATCT-CTGATGAACCATGGGGATGGTACA 1582
|||||||||||||||||| ||||||| || | || | | || ||||||||||||||||
Sbjct 1499 CTACTTGAGTGTGAAGCAAGTGACTCTCTACA-CTTCAAACGATCCATGGGGATGGTACA 1557
Query 1583 AA 1584
||
Sbjct 1558 AA 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65743762870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5