BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48180.1

Length=455
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937568 jgi|Araly1|937568|scaffold_501759.1                        294    3e-79


> Ahg937568 jgi|Araly1|937568|scaffold_501759.1
Length=275

 Score =  294 bits (159),  Expect = 3e-79
 Identities = 243/281 (86%), Gaps = 15/281 (5%)
 Strand=Plus/Plus

Query  95   TCTTTCTCGTTCTCATACA-ATATGGAGAGAAACTCTTGGGCCGAGCAGTGGGAC-AGCA  152
            |||||||| |||||||||| | ||||||||||| ||||||||||| ||||||||| || |
Sbjct  1    TCTTTCTCTTTCTCATACAGA-ATGGAGAGAAATTCTTGGGCCGATCAGTGGGACAAG-A  58

Query  153  ATCAACAATCGTCGGGAAAAAC-AACTCACGGCGGAGAAGGTGGTGGT-GCA--TCGTCT  208
            ||   ||| ||||||||||| | || | | |||||||| || ||| || |||  ||| | 
Sbjct  59   AT---CAAGCGTCGGGAAAACCGAA-TGATGGCGGAGACGGCGGTCGTGGCACTTCGGCG  114

Query  209  AAATACAAAGAGAAAGTGGGGGCTGGATTAGGGAAGACGAAAGCGGCGGCGAGTTCGGGG  268
            ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| || 
Sbjct  115  AAATATAAAGAAAAAGTGGGGGTTGGATTAGGGAAGACGAAAGCGGCGGCGAGTTCCGGT  174

Query  269  TTAAAGAAGGTGAAGATAGGAACATCGTTGGGTCTTAATTGGGTTAAAGACAAGTACAAC  328
            |||||||||||||| |||||||| ||  |||| |||||||||||||||||||||||||||
Sbjct  175  TTAAAGAAGGTGAAAATAGGAACGTCCCTGGGACTTAATTGGGTTAAAGACAAGTACAAC  234

Query  329  AAGACCACCACTAAGAATTGACTCATCATATCTTTGttttt  369
            ||||||||||||||||||||| |  || |||||||||||||
Sbjct  235  AAGACCACCACTAAGAATTGA-T--TCGTATCTTTGTTTTT  272



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16445058859


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5