BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48185.1 Length=533 Score E Sequences producing significant alignments: (Bits) Value Ahg897660 jgi|Araly1|897660|Al_scaffold_0005_1626 394 4e-109 > Ahg897660 jgi|Araly1|897660|Al_scaffold_0005_1626 Length=258 Score = 394 bits (213), Expect = 4e-109 Identities = 247/262 (94%), Gaps = 8/262 (3%) Strand=Plus/Plus Query 237 ATGTTTGTATCTTCATCCACGTGTGCGTACGAGATCCAAAAGGGGAATCAAGCGTCTCGG 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTTTGTATCTTCATCCACGTGTGCGTACGAGATCCAAAAGGGGAATCAAGCGTCTCGG 60 Query 297 TCCGATCCTTCGCTGCATCAAAGCGATCTTCATCTTGAAAATTACCAAATCAAgtgtgtg 356 |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 TCCGATCCTTCGCTGCTTCAAAGCGATCTTCATCTTGAAAATCACCAAATCAAGTGTGT- 119 Query 357 tgttt-tta-ctctttcttt-tctttttgtgtttctttttcttttgactaccctttgtat 413 | ||| ||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 120 T-TTTATTATCTCTTT-TTTCTCTTTTTGTGTTTCTTTTTCTTTTGACTACCTTTTGTAT 177 Query 414 ttctatttgcttctttttttctt-cttcCGAATATCTCCTTTTTCCGATCGGTGTTTTGG 472 ||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||||| Sbjct 178 TTCTATTTGCTTCTTTTTTTCTTTCTTCCGCATATCTCTTTTTTC-GATCGGTGTTTTGG 236 Query 473 TCTGACTGATTTAGACTTATGA 494 | ||||||||||||| |||||| Sbjct 237 TTTGACTGATTTAGATTTATGA 258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19421194801 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5