BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48185.1
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897660 jgi|Araly1|897660|Al_scaffold_0005_1626 394 4e-109
> Ahg897660 jgi|Araly1|897660|Al_scaffold_0005_1626
Length=258
Score = 394 bits (213), Expect = 4e-109
Identities = 247/262 (94%), Gaps = 8/262 (3%)
Strand=Plus/Plus
Query 237 ATGTTTGTATCTTCATCCACGTGTGCGTACGAGATCCAAAAGGGGAATCAAGCGTCTCGG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTGTATCTTCATCCACGTGTGCGTACGAGATCCAAAAGGGGAATCAAGCGTCTCGG 60
Query 297 TCCGATCCTTCGCTGCATCAAAGCGATCTTCATCTTGAAAATTACCAAATCAAgtgtgtg 356
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TCCGATCCTTCGCTGCTTCAAAGCGATCTTCATCTTGAAAATCACCAAATCAAGTGTGT- 119
Query 357 tgttt-tta-ctctttcttt-tctttttgtgtttctttttcttttgactaccctttgtat 413
| ||| ||| |||||| ||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 120 T-TTTATTATCTCTTT-TTTCTCTTTTTGTGTTTCTTTTTCTTTTGACTACCTTTTGTAT 177
Query 414 ttctatttgcttctttttttctt-cttcCGAATATCTCCTTTTTCCGATCGGTGTTTTGG 472
||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||||||
Sbjct 178 TTCTATTTGCTTCTTTTTTTCTTTCTTCCGCATATCTCTTTTTTC-GATCGGTGTTTTGG 236
Query 473 TCTGACTGATTTAGACTTATGA 494
| ||||||||||||| ||||||
Sbjct 237 TTTGACTGATTTAGATTTATGA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19421194801
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5