BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48208.1

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937575 jgi|Araly1|937575|scaffold_501766.1                        298    1e-80


> Ahg937575 jgi|Araly1|937575|scaffold_501766.1
Length=313

 Score =  298 bits (161),  Expect = 1e-80
 Identities = 196/212 (92%), Gaps = 6/212 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGATGATGAAGGTAATGTTGATGGTGGTGATGATGATGGTCTTGGTTGGAACCATA  60
            |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||   
Sbjct  21   ATGGCGATGATGAAGGTAATGTTGATGGTGGTGATGATGATGGTGTTGGTTGGTACC---  77

Query  61   ATAGTAATAGGTGAAGAGTCACATGCGGATTGTTTGAAACGGTGTCAGCAACTGTGCGTT  120
              | |||||||||||||||||||||| ||||||||| |||||||||||||  |||||| |
Sbjct  78   --A-TAATAGGTGAAGAGTCACATGCAGATTGTTTGGAACGGTGTCAGCATTTGTGCGCT  134

Query  121  GATAAGCCTTTGGATAAGAATTGCGTCCGCCAATGCGTCTTTTTTAATTGCGGTCCTCCT  180
            ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  135  GATAAGCCTCTGGATAAGAATTGTGTCCGCCAATGCGTCTTTTTTAATTGCGGTCCTCCT  194

Query  181  GCTCTTCCTACCAATGTTCATCATTCTAAGTA  212
             |||||||||||||||||||||||||||||||
Sbjct  195  TCTCTTCCTACCAATGTTCATCATTCTAAGTA  226



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9432500467


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5