BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48209.1

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485183 jgi|Araly1|485183|fgenesh2_kg.5__1175__AT3G48209.1         296    4e-80


> Ahg485183 jgi|Araly1|485183|fgenesh2_kg.5__1175__AT3G48209.1
Length=208

 Score =  296 bits (160),  Expect = 4e-80
 Identities = 193/208 (93%), Gaps = 6/208 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGATGAAGAAATGTAG--T-ATGATCATGATGAT-A-A-TGATGATGGTGGTGATG  54
            ||||||||||||||||||||  | ||||| |||||||| | | |||||||| ||||||||
Sbjct  1    ATGGAGATGAAGAAATGTAGTATGATGATGATGATGATGATATTGATGATGCTGGTGATG  60

Query  55   GCATCCATACGAGGAGGAGAAGCAATTATAATAAGAACAACATGCAAGCAAATGTGCATC  114
            ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct  61   GCATCCATAAGAGGAGGAGATGCAGTTATAATAAGAACAACATGCAAGCAAATGTGCATC  120

Query  115  GACCAATGTGGTGGCCGCATCACTGTCCCTGAGACCCCTTGTCTCCGTAAATGTCTTCAC  174
            |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||
Sbjct  121  GACCAATGTGGTGGCCGCATCACTATCCCTGAAACCCCTTGTCTCCGTAAATGTCTCCAC  180

Query  175  GAAAAATGTGGCTTTCCAGCTCCTCCGT  202
            || |||||||||||||||||||||||||
Sbjct  181  GAGAAATGTGGCTTTCCAGCTCCTCCGT  208



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6912075241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5