BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48210.1
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897667 jgi|Araly1|897667|Al_scaffold_0005_1633 1441 0.0
> Ahg897667 jgi|Araly1|897667|Al_scaffold_0005_1633
Length=948
Score = 1441 bits (780), Expect = 0.0
Identities = 893/949 (94%), Gaps = 2/949 (0%)
Strand=Plus/Plus
Query 77 ATGGAACAAATTAGCAACATCGCTGGTGGAGACACAACGAAAG-AGACTATGGCGTCTCT 135
||||||||||||||||||| |||||||||||| |||||| ||| | ||||||||||||||
Sbjct 1 ATGGAACAAATTAGCAACAACGCTGGTGGAGATACAACG-AAGAAAACTATGGCGTCTCT 59
Query 136 GGGTCTCATCTGTGAGAAAGATATTCATGAACAGCGTCTTAAAATCGATTCTTTCATCGC 195
||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 60 GGGTCTCATTTGTGAGAAAGATATAAATGAACAGCGTCACAAAATCGATTCCTTCATCGC 119
Query 196 TTCTCCTTTCCGGAGATCGATGAACTCTTTAGTGGAGCGAGCTCAAGCCACTGCTCAAAG 255
|||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||
Sbjct 120 TTCTCCTTTCCGGAGATCGAAGGACTCTTTAGTGGAGCGAGCTCAAGCCACTGCCCAAAA 179
Query 256 CCAAGTGGAACTAATGAATTTGAAAGCGGATCTGAGAGAAGCAGAGGATGAGCTAGTTAA 315
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 180 CCAAGTGGAACTAGTGAATTTGAAAGCGGATCTGAGAGAAGCAGAGGATGAGCTCGTTAA 239
Query 316 AGTGTTGGCAGTGAAAACCCGTAAAGAGGCACGGCAAATGGGGATAAGAGATTCCATTTC 375
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 AGTGTTAGCAGTGAAAACCCGTAAAGAGGCACGGCAAATGGGGATAAGGGATTCCATTTC 299
Query 376 TGCAACACAATCTAGGATTGAAGTACTTAGAAGAAATTTGCAGCTACAGAAGTCAAAGAA 435
|||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||
Sbjct 300 TGCAACACAATCTAGGATTGAAGTGCTTAGAAGAACTTTGCAGTTACAGAAGTCAAAGAA 359
Query 436 GGATGATTCTGTGAGAATTATCTCCCAACAGTTGCAAGCCTTGTCAAAATCGAAGGACAA 495
||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||
Sbjct 360 GGAAGATTCTGTGAGAATTATCTCCCAACAGTTGCAAGCTTTGTCAACATCTAAGGATAA 419
Query 496 CGCTGGTAAAGTCACCGAAGACAAAGCAGATATTCATGAAGCAATCTCTTGGTATAATCA 555
||||||||||||| ||||||||| |||| || |||||||| |||||||||||||||||
Sbjct 420 TGCTGGTAAAGTCAGTGAAGACAAAACAGACATCCATGAAGCCATCTCTTGGTATAATCA 479
Query 556 TGCTCTCGGTTTTCACGTTGAAGCTGGACATGGAGTTAAATTCACATTCACCAACATTGA 615
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 480 GGCTCTCGGTTTTCACGTTGAAGCTGGACATGGAGTGAAATTCACATTCACCAATATTGA 539
Query 616 TGCAAAAAGGCCGACCCGCGAATTTTCGTTCACAGTTCACTATGGAAATGACATCTACAC 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCAAAAAGGCCGACCCGCGAATTTTCGTTCACAGTTCACTATGGAAATGACATCTACAC 599
Query 676 ACTATTGGATAGCGATCTGCAATTGGATTACATCAACGAGATGGTTCAAGAATTGAATAA 735
|||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 600 ACTATTGGATTGCGACCTGCAATTGGATGACATCAACGATATGGTTCAAGAATTGAATAA 659
Query 736 AACCAATGACCTTTTCAGATTTGTTCGTCTGATGAGGGAGCAGTTTCTGAAATCCACTTT 795
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 AACCAATGACCTTTTCAGATTTGTTCGTCTGATGAGGGATAAGTTTCTGAAATCCACTTT 719
Query 796 ATCTGAGCTGCCAACACATTCAGGACAACTGCAACAGGAAACGTCTGCCATATCTGCTTC 855
||||||| ||||||||||||||| ||| |||||||||||||| |||| ||||||||||||
Sbjct 720 ATCTGAGTTGCCAACACATTCAGAACATCTGCAACAGGAAACTTCTGTCATATCTGCTTC 779
Query 856 AGCTCCAGCTATATCATTTTCCACTGATACAAACATGTCAACTCCAGAAAACAAAAGATC 915
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 780 AGCTCCAGCTATATCATTTTCCACTGATACAAACATGTCAACTCCAGAAAACAAGAGATC 839
Query 916 TAAGGTTCAAGTGAATCGGCGACAAAAAAGAGGTAGCGAATCACCACTCCTAGCTCCTGT 975
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 840 TAAGGTTCAAGTGATTCGGCGACAAAAAAGAGCTAGCGAATCACCACTCCTATCTCCTGT 899
Query 976 ATCCACATCTGCCACTCGCCGTTCTTCTCGCTTTAAGGGTAAGAAATGA 1024
||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 900 ATCTGCATCTGCCACTCGCCGGTCTTCTCGCCTTAAGGGTAAGAAATGA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5