BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48220.1

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg951744 jgi|Araly1|951744|scaffold_13300003.1                      135    3e-31


> Ahg951744 jgi|Araly1|951744|scaffold_13300003.1
Length=1127

 Score =  135 bits (73),  Expect = 3e-31
 Identities = 323/434 (74%), Gaps = 55/434 (13%)
 Strand=Plus/Plus

Query  60   AGTCGTGGCTCACTACGAATGCG-AAACTTGGGGTCTTCCACGATCTCTAAGTTCTTACA  118
            ||||||||||||||||| ||| | || | ||||| ||| ||||||||||| |||||||| 
Sbjct  175  AGTCGTGGCTCACTACG-ATGTGCAATC-TGGGGACTTACACGATCTCTAGGTTCTTACT  232

Query  119  TCTCTTCTTTCATAACCCACAA-ATTC-A-ATACTCAATTCCCAAACGTTACACTCGCCG  175
            | || |||||| ||| ||| || |||| | | || ||| |   ||| || | | |  || 
Sbjct  233  TGTCGTCTTTCCTAA-CCAAAACATTCGAGACACACAA-T-GAAAAGGTCAGAGT--CC-  286

Query  176  TGGCTTACACTC-ATGTTGGATTGATTTTGATCAGCTCT-GG--C-AAC---AA-ATTAC  226
            |||||||||| | | |||||||||||||||||  | | | ||  |  ||   || | | |
Sbjct  287  TGGCTTACAC-CAACGTTGGATTGATTTTGAT-TGGTTTGGGATCTGACTTGAAGAAT-C  343

Query  227  TAACTTACTATGTGGCTAATCCGATCTCA-AGACAATGTGTCG-AAAT--C-CCTCAG--  279
             |||||||||  ||||||||||||| ||| | ||||||||| | ||||  | |||| |  
Sbjct  344  CAACTTACTACATGGCTAATCCGATTTCACA-ACAATGTGT-GAAAATCCCACCTCGGCC  401

Query  280  -C--C-TCCTC-----CAAC-AGTTGGTTATTTTTTA-ACCTCTGGGCTTGTCACAAAAC  328
             |  | |||||     |||| ||  ||  || ||| | | | |||| || ||||| |  |
Sbjct  402  TCTTCGTCCTCTAGGTCAACAAG-AGG-AATGTTTCAGA-C-CTGGACTCGTCAC-ACGC  456

Query  329  -TTGAGGATCACGTCGTTTTAGGTTACAAAGTTGTTTTGATGGATACAAGTAACTTG-GA  386
             ||||  |  ||||| ||||||||||||||||||||||||||||||  | |||| |  ||
Sbjct  457  ATTGAAAAAGACGTCCTTTTAGGTTACAAAGTTGTTTTGATGGATAGGACTAACATCAGA  516

Query  387  -C-GATGTCATAAGTTTACT-GATATATTCATCCGAGACAGGGTTATGGAGTTTCAAAAC  443
             | | |||| |||||||| | | |||||||||| |||||||| || ||||||||||| ||
Sbjct  517  ACAGGTGTCTTAAGTTTAGTCG-TATATTCATCTGAGACAGGCTTGTGGAGTTTCAACAC  575

Query  444  CCTCCAATCTCATC  457
             ||||| |||||||
Sbjct  576  TCTCCAGTCTCATC  589



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23636208540


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5