BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48230.1
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897669 jgi|Araly1|897669|Al_scaffold_0005_1635 363 3e-99
> Ahg897669 jgi|Araly1|897669|Al_scaffold_0005_1635
Length=483
Score = 363 bits (196), Expect = 3e-99
Identities = 240/260 (92%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 621 ATGATCAACAAAGCGGGAAAAAGAAGAGTTTGGCAGGTTTGGAACCAAAACGGCACCAGC 680
|||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGATCAACAAAACGGAAAAAATAAGAGTTTGGCAGGTGTGGAACCAAAACGGCACCAGC 60
Query 681 TGTCCTG-ACGAAACTATACCCATAAGACGTAGCGTGGTCGGGGC-TAAAAGATTTAAGA 738
||||||| || |||||||||||||||||| |||| ||||| ||| |||| |||||| ||
Sbjct 61 TGTCCTGAAC-AAACTATACCCATAAGACATAGCATGGTC-AGGCTTAAACGATTTAGGA 118
Query 739 AAAAACATTGGACAGATGTTCGAGTCAATCGCCGAACAGTTCCATACGCCGCTGAGGAGG 798
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 AAAATCATTGGACAGATGTTCGAGTCAATCGCCGAACAGTTCCATACGCCGCTGATGAGG 178
Query 799 GACACGAGTA--CGC--GATTGGAGAGGTGGTATATCTGCGGGGAATATATGGAACAGTG 854
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GACACGAGTACGCGCGAGATTGGAGAGGTGGTATATCTGCGGGGAATATATGGAACAGTG 238
Query 855 GCAACTATGAACGTTTGGAA 874
|||||||||||||| |||||
Sbjct 239 GCAACTATGAACGTGTGGAA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62239460330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5