BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48230.1 Length=1660 Score E Sequences producing significant alignments: (Bits) Value Ahg897669 jgi|Araly1|897669|Al_scaffold_0005_1635 363 3e-99 > Ahg897669 jgi|Araly1|897669|Al_scaffold_0005_1635 Length=483 Score = 363 bits (196), Expect = 3e-99 Identities = 240/260 (92%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 621 ATGATCAACAAAGCGGGAAAAAGAAGAGTTTGGCAGGTTTGGAACCAAAACGGCACCAGC 680 |||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGATCAACAAAACGGAAAAAATAAGAGTTTGGCAGGTGTGGAACCAAAACGGCACCAGC 60 Query 681 TGTCCTG-ACGAAACTATACCCATAAGACGTAGCGTGGTCGGGGC-TAAAAGATTTAAGA 738 ||||||| || |||||||||||||||||| |||| ||||| ||| |||| |||||| || Sbjct 61 TGTCCTGAAC-AAACTATACCCATAAGACATAGCATGGTC-AGGCTTAAACGATTTAGGA 118 Query 739 AAAAACATTGGACAGATGTTCGAGTCAATCGCCGAACAGTTCCATACGCCGCTGAGGAGG 798 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 119 AAAATCATTGGACAGATGTTCGAGTCAATCGCCGAACAGTTCCATACGCCGCTGATGAGG 178 Query 799 GACACGAGTA--CGC--GATTGGAGAGGTGGTATATCTGCGGGGAATATATGGAACAGTG 854 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 GACACGAGTACGCGCGAGATTGGAGAGGTGGTATATCTGCGGGGAATATATGGAACAGTG 238 Query 855 GCAACTATGAACGTTTGGAA 874 |||||||||||||| ||||| Sbjct 239 GCAACTATGAACGTGTGGAA 258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62239460330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5