BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48235.1
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314367 jgi|Araly1|314367|fgenesh1_pm.C_scaffold_1003147 676 0.0
Ahg317667 jgi|Araly1|317667|fgenesh1_pm.C_scaffold_3000683 556 2e-157
> Ahg314367 jgi|Araly1|314367|fgenesh1_pm.C_scaffold_1003147
Length=525
Score = 676 bits (366), Expect = 0.0
Identities = 415/439 (95%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 1704 ATGGCAATTTCTTCGGTAAAGAATAGTTTTGAACAAATGATGACTTTTAAAAGTGTATTT 1763
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAATTTCTTCGGTAAAGAATAGATTTGAACAAATGATGACTTTTAAAAGTGTATTT 60
Query 1764 GGATTTTTGTTTGATTTATTGAAATTAAAATCACTTGATGAAGGTGAATTAAAAGAGCAT 1823
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GGATTTTTGTTTGATTCATTGAAATTAAAATCACTTGATGAAAGTGAATTAAAAGAGCAT 120
Query 1824 TGCATTATTTTTCACAAAACATTTTCTCATGAGAATGTCTCGGATATTGATTTAAATGAT 1883
||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 121 TGCATTAATTTTCACAAAACATTTTCTCATGATAATGTCTCGGATGTTGATTTTAATGAT 180
Query 1884 CTTTTT-CGGAATTAAAAGTTTTGCAAATGACTTTATACCAAGTGTCAATGACACCTAGT 1942
||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 181 TTTTTTTCAGAATTAAAAGTTTTGCAAATGTGTTTATCCCAAGTGTCAATGACACCTAGT 240
Query 1943 GAAGTGCCTGAGTTTGTAGAAAATGTAGGATGTTATCCCAATGTTTCAATCGCTTATCGA 2002
||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 241 GAAGTGCTTGAGTTTGTAGAAAATGTAGGTTGTTATCCGAATGTTTCAATTGCTTATCGA 300
Query 2003 ATCCTATTAACAACACCCGTGACGGTGGCTTAGACCGAGAGAAGCTTCTCAAAATTGAAG 2062
|||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||||
Sbjct 301 ATCCTATTAACAACACCCGTGACGGTAGCTTCGGCCGAGATAAGCTTCTCAAAATTGAAG 360
Query 2063 TTATTAAAAAATTATATGAGGTCCTCTATGTCTCAACAAAGGTTGAATGGTCTAGTTATT 2122
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTATTAAAAAATTATATGCGGTCCTCTATGTCTCAACAAAGGTTGAATGGTCTAGCTATT 420
Query 2123 CTATGCATTGAAAAA-GTT 2140
||||||||||||||| |||
Sbjct 421 CTATGCATTGAAAAAAGTT 439
> Ahg317667 jgi|Araly1|317667|fgenesh1_pm.C_scaffold_3000683
Length=483
Score = 556 bits (301), Expect = 2e-157
Identities = 342/362 (94%), Gaps = 1/362 (0%)
Strand=Plus/Plus
Query 1704 ATGGCAATTTCTTCGGTAAAGAATAGTTTTGAACAAATGATGACTTTTAAAAGTGTATTT 1763
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAATTTCTTCGGTAAAGAATAGATTTGAACAAATGATGACTTTTAAAAGTGTATTT 60
Query 1764 GGATTTTTGTTTGATTTATTGAAATTAAAATCACTTGATGAAGGTGAATTAAAAGAGCAT 1823
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GGATTTTTGTTTGATTCATTGAAATTAAAATCACTTGATGAAAGTGAATTAAAAGAGCAT 120
Query 1824 TGCATTATTTTTCACAAAACATTTTCTCATGAGAATGTCTCGGATATTGATTTAAATGAT 1883
||||||| |||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 121 TGCATTAATTTTCACAAAACATTTTCTCATGATAATGTCTCGGATGTTGATTTTAATGAT 180
Query 1884 CTTTTT-CGGAATTAAAAGTTTTGCAAATGACTTTATACCAAGTGTCAATGACACCTAGT 1942
||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 181 TTTTTTTCAGAATTAAAAGTTTTGCAAATGTGTTTATCCCAAGTGTCAATGACACCTAGT 240
Query 1943 GAAGTGCCTGAGTTTGTAGAAAATGTAGGATGTTATCCCAATGTTTCAATCGCTTATCGA 2002
||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 241 GAAGTGCTTGAGTTTGTAGAAAATGTAGGTTGTTATCCGAATGTTTCAATTGCTTATCGA 300
Query 2003 ATCCTATTAACAACACCCGTGACGGTGGCTTAGACCGAGAGAAGCTTCTCAAAATTGAAG 2062
|||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 301 ATCCTATTAACAACACCCGTGACGGTAGCTTCGGCCGAGAGAAGCTTCTCAAAATTGAAG 360
Query 2063 TT 2064
||
Sbjct 361 TT 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81741665770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5