BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48240.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937580 jgi|Araly1|937580|scaffold_501771.1 857 0.0
> Ahg937580 jgi|Araly1|937580|scaffold_501771.1
Length=582
Score = 857 bits (464), Expect = 0.0
Identities = 547/587 (93%), Gaps = 6/587 (1%)
Strand=Plus/Plus
Query 45 GAAACCTAGAAGCTTCTAACAATGGTGGCCGTAGCTGAGAATCAGAAAACGAAGAACAGT 104
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAACCTAGAAGCTTCTAAAAATGGTGGCCGTAGCTGAGAATCAGAAAACGAAGAACAGT 60
Query 105 CTCAAGTTCCTCTGCAGTTACGGCGGAAGAATCCTCCCTCGTTCTATCGATGGAAAGCTC 164
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 61 CTCAAGTTCCTCTGCAGTTACGGTGGCAGAATCCTCCCTCGTTCTATCGATGGAAATCTC 120
Query 165 CGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCTATCTCTTTCACAGAA 224
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 CGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCAATCTCTTTCACAGAA 180
Query 225 TTGACGATGAAGTTGGAGGAATTTTGTGGATACTCCGTTGAATTGAAGTGTCAATTACCA 284
|||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 TTGATGATGAAATTGGAGGAATTTTGTGGCTATTCCGTTGAATTGAAGTGTCAATTACCA 240
Query 285 AATGGAGATCTCGAGACACTAATCTCCGTCAAATCGGACGAAGATCTGGTGAATATCGTT 344
|| |||||||| ||||||||||| |||||||| || || || ||||| | |||||| |||
Sbjct 241 AACGGAGATCTGGAGACACTAATTTCCGTCAAGTCAGATGAGGATCTAGCGAATATGGTT 300
Query 345 GAAGAATATGATCGTGTTTACGGAGGCAAGATCCGTGCGATTTTGTCGCCTCCTAAGCAG 404
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GAAGAATACGATCGTGTTTACGGAGGCAAGATCCGTGCGATTTTGTCGCCTCCCAAGCAG 360
Query 405 ATGTCACCACGATCTAGCGGCGGCGGTGGAGATCTATCGCCGAAATCGCCGTTCTCCGTC 464
||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 361 ATGTCGCCACGATCTAGCGGCGGTTGTGGAGATCTATCACCGAAATCGCCATTCTCCGTC 420
Query 465 GTGGCTTCTCCATCTCCGCCTCGGTATTGTGTGGCTCCGCCGACGGAGAATCTTCTCAGT 524
||||||||||| ||||||||||| || ||| |||||||| | |||||||||||||||||
Sbjct 421 GTGGCTTCTCCTTCTCCGCCTCGTTACTGTTTGGCTCCG--G-CGGAGAATCTTCTCAGT 477
Query 525 AGATTCCGTATGAGAACTGGAGAATACTCTCGTTGCTGTAACTGCCGTGTTC-CAAACAG 583
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||
Sbjct 478 AGATTCCGTATGAGAACTGGAGAATATTCTCGTTGCTGTAACTGCCGTGTTCACAA-CAA 536
Query 584 AGACTCCAAGCTTATCTGGCAATAACGTCAGACGGAgaaataaaaat 630
|||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 537 AGACTCCAAGCTTATCTGGCAATAACGTT-GACGGTGAAATAAAAAT 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5