BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48250.1
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937581 jgi|Araly1|937581|scaffold_501772.1 2900 0.0
> Ahg937581 jgi|Araly1|937581|scaffold_501772.1
Length=1900
Score = 2900 bits (1570), Expect = 0.0
Identities = 1773/1870 (95%), Gaps = 17/1870 (1%)
Strand=Plus/Plus
Query 1 ATGTACAGATCAATGGCAATCCTGTCTTCTCTTCG-ACACGCGTACTCACAGATCTCTAC 59
||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 22 ATGTACAGATCAAAGGCAATCCTGTCTTCTCTTCGTA-ACGCTTACTCACAGATCTCTAC 80
Query 60 TCGATCGTATCTAAGCCGATCTAAGGTGGGTTTTTCCTCAAACTTG-TCTTCGCCTCTCG 118
|||||||||||||||| || || |||||||||||||||| ||| | | |||||||||||
Sbjct 81 TCGATCGTATCTAAGCAGAGCTCAGGTGGGTTTTTCCTCGCACTCGAT-TTCGCCTCTCG 139
Query 119 ATTCATTTGCAATCGTCCCTAGTCGATTTCTTTGGAAATTTCGAACCTTTTCTTCGAAAC 178
|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 140 ATTCATTTGCAA---TCCCTAGTCGATTCCTTTGGAAATTCCGAACCTTTTCTTCGAAAC 196
Query 179 CAGATTCTATGCTTCAATTAGTGCTTGAGAATGATTGGTCTAAGGAAGTAGAGGAAGGAT 238
||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 197 CAGATTCTACGCTTCAATTAGTACTTGAGAACGATTGGTCTAAGGAAGTAGAGGAAGGAT 256
Query 239 TGAGGAAACCTGATATGTCTTTGACACACGAGACTGCAATTTACGTTCTGAGGAAATTGG 298
|||||||||| ||| ||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 257 TGAGGAAACCGGATTTGTCTTTAACACACGAGACTGCGATTTACGTTTTGAGGAAATTGG 316
Query 299 AGAAGTATCCTGAAAAAGCTTATTACTTTCTCGATTGGGTTTTGAGAGATTCAGGGCTTA 358
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 317 AGAAGTATCCTGAAAAAGCTTATTACTTTCTTGATTGGGTTTTGCGAGATTCAGGGCTTA 376
Query 359 GTCCAAGTACTCCACTCTATAGCATTATGTTGAGGATTTTAGTGCAGCAGAGATCAATGA 418
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 377 GTCCAAGTACTCCACTTTATAGCATTATGTTGAGGATTTTAGTGCAGCAGAGATCTATGA 436
Query 419 AACGGTTTTGGATGACTCTGAGGGAGATGAAACAAGGAGGGTTTTATTTAGACGAGGATA 478
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 437 AGCGGTTTTGGATGACTCTGAGTGAGATGAAACAAGGAGGGTTTTATTTAGATGAGGATA 496
Query 479 CTTATAAGACTATTTATGGTGAGCTTAGTAAGGAGAAATCGAAAGCTGATGCTGTGGCTG 538
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 497 CTTATAAGACTATTTATGGTGAGCTTAATAAGGAGAAATCGAAAGCGGATGCTGTGGCTG 556
Query 539 TGGCTCATTTTTATGAGAGAATGCTTAAGGAGAACGCAATGTCTGTTGTTGCTGGAGAGG 598
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 557 TGGCTCATTTTTATGAGAGAATGCTTAAGGAGAATGCTATGTCTGTTGTTGCTGGAGATG 616
Query 599 TTTCTGCTGTTGTTACTAAGGGGGATTGGAGTTGTGAGGTTGAGAGGGAATTGCAGGAGA 658
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 617 TTTCTGCTGTTGTTACGAAGGTGGATTGGAGTTGTGAGGTTGAGAGGGAATTGCAGGAGA 676
Query 659 TGAAGCTCGTTTTGTCGGATAATTTTGTGATTAGGGTGTTGAAAGAACTAAGGGAACATC 718
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 677 TGAAGCTCGTTTTGTCGGATAATTTTGTTATCAGGGTGTTGAAGGAACTAAGGGAGCATC 736
Query 719 CTTTGAAAGCTTTGGCGTTTTTCCATTGGGTTGGTGGTGGTGGTAGTTCTTCTGGTTATC 778
| ||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||
Sbjct 737 CCTTGAAAGCTTTGGCGTTTTTCCATT--G--GGT--TGGTGGCAGTTCTTCTGGTTATC 790
Query 779 AACACAGTACTGTTACTTATAACGCAGCTTTGAGGGTTTTGGCTAGGCCTAACTCGGTTG 838
||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 791 AACACAGTACTGTTACTTATAACGCGGCTTTGAGGGTTTTGGCCAGGCCTATTTCGGTTG 850
Query 839 CAGAGTTTTGGAGTGTTGTTGATGAAATGAAGACTGCAGGGTATGATATGGATCTTGACA 898
| |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 851 CTGAGTTTTGGAGTGTTGTTGATGAAATGAAGACCGCAGGGCATGAGATGGATCTTGACA 910
Query 899 CTTATATAAAGGTTTCAAGGCAGTTTCAGAAATCTAGAATGATGGCTGAGACAGTTAAGC 958
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 911 CTTATATAAAGGTTTCTAGACAGTTTCAGAAATCTAGAATGATTACTGAGACAGTTAAGC 970
Query 959 TTTATGAATATATGATGGATGGTCCGTTCAAACCATCTATTCAAGATTGTAGTCTTTTGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TTTATGAATATATGATGGATGGTCCGTTCAAACCATCTATTCAAGATTGTAGTCTTTTGT 1030
Query 1019 TGAGGTATTTATCGGGTAGTCCCAATCCAGATTTGGATTTGGTGTTTCGGGTTTCGAGGA 1078
||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1031 TGAGGTATTTATCGGCTCGTCCCAACCCAGATTTGGATTTGGTGTTTCGGGTTTCAAGGA 1090
Query 1079 AATATGAATCAACAGGGAAGTCTCTCTCAAAAGCTGTTTATGATGGAATCCACAGGTCTT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AATATGAATCAACAGGGAAGTCTCTCTCAAAAGCTGTTTATGATGGAATCCACAGGTCTT 1150
Query 1139 TAACCAGTGTAGGTAGGTTTGACGAAGCTGAGGAAATCACCAAGGCTATGAGAAATGCGG 1198
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1151 TAACCAGTGTAGGTAGGTTTGACGAAGCAGAGGAAATCACGAAGGCTATGAGAAATGCGG 1210
Query 1199 GTTATGAGCCGGATAACATCACATACAGCCAACTCGTGTTTGGTCTTTGTAAAGCTAAGA 1258
|||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1211 GTTATGAGCCAGATAACATCACATACAGCCAACTCGTGTTTGGGCTTTGTAGAGCTAAGA 1270
Query 1259 GATTAGAAGAAGCACG-AGGAGTCCTTGATCAAATGGAAGCACAAGGATGCTTTCCCGAC 1317
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 GATTAGAAGAAGCACGCA-GAGTCCTTGATCAAATGGAAGCACAAGGATGCTTTCCCGAC 1329
Query 1318 ATAAAAACTTGGACTATACTGATCCAAGGGCACTGCAAAAACAATGAATTGGATAAGGCC 1377
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1330 ATAAAGACTTGGACTATTCTGATCCAAGGGCACTGCAAAAACAATGAATTGGATAGGGCC 1389
Query 1378 TTGGCGTGTTTTGCGAATATGCTAGAGAAAGGGTTTGATATTGACTCTAATCTGCTTGAT 1437
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 TTGGAGTGTTTTGCGAATATGCTAGAGAAAGGGTTTGATATTGACTCTAATCTGCTTGAT 1449
Query 1438 GTCTTGATAGATGGGTTTGTTATCCACAACA-AATTCGAGGGGGCAAGCATATTCCTTAT 1496
|||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||
Sbjct 1450 GTCTTGATAGATGGGTTTCTTATCCAAAACAGGA-TCGAGGGGGCAAGCATATTCCTTAT 1508
Query 1497 GGAGATGGTGAAAAATGCCAATGTAAAGCCTTGGCAAAGCACGTACAAACTTCTTATAGA 1556
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1509 GGAGATGGTGAAAAATGCCAATGTAAAGCCTTGGCAAAGCACTTACAAACGTCTTATAGA 1568
Query 1557 CAAGCTGCTAAAGATCAAGAAGAGTGAAGAAGCACTAGATCTTCTTCAGATGATGAAGAA 1616
|||||||||| ||||||||||| | ||||||| ||||||||||||||| ||||||||||
Sbjct 1569 CAAGCTGCTAGAGATCAAGAAGGGCAAAGAAGCGCTAGATCTTCTTCAGTTGATGAAGAA 1628
Query 1617 GCAAAATTACCCTGCGTATGCAGAAGCTTTTGATGGATACCTTGCAAAGTTTGGGACTTT 1676
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GCAAAATTACCCTGCATACGCAGAAGCTTTTGATGGATACCTTGCAAAGTTTGGGACTTT 1688
Query 1677 GGAAGACGCTAAGAAGTTCTTGGATGTGCTTAGCTCAAAGGATTCTCCTTCCTTTGCAGC 1736
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1689 GGAAGACGCTAAGAAGTTCTTGGATGTGCTAAGCTCCAAGGATTCTCCTTCCTTTGCAGC 1748
Query 1737 CTACTTTCATGTCATTGAAGCTTTCTATCGAGAAGGAAGACTCACTGATGCGAAAAATCT 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 CTACTTTCATGTCATTGAAGCTTTCTATCGAGAAGGAAGACTCACTGATGCGAAAAATCT 1808
Query 1797 TCTCTTCATATGTCCCCATCACTTTAAAACTCACCCTAAAATCTCCGAACTCTTTGGTGC 1856
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1809 TCTCTTCATATGTCCCCATCACTTTAAAACACACCCTAAAATCTCTGAACTCTTTGGTGC 1868
Query 1857 TGCAGCTTGA 1866
||||||||||
Sbjct 1869 TGCAGCTTGA 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5