BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48260.1
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897674 jgi|Araly1|897674|Al_scaffold_0005_1640 2510 0.0
Ahg905276 jgi|Araly1|905276|Al_scaffold_0003_2404 272 5e-72
> Ahg897674 jgi|Araly1|897674|Al_scaffold_0005_1640
Length=1545
Score = 2510 bits (1359), Expect = 0.0
Identities = 1489/1552 (96%), Gaps = 8/1552 (1%)
Strand=Plus/Plus
Query 1 ATGCGACAAGACGAGAATAACTCCGAGGAAGAATTCGTTGAGATTGATCCCACTGGTCGC 60
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGACAAGACGATAATAATTCCGAGGAAGAATTCGTTGAGATTGATCCCACTGGTCGC 60
Query 61 TATGGCCGGTATAAAGAAGTTCTAGGCAAAGGAGCTTTCAAAGAAGTATACAGAGCATTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGGCCGGTATAAAGAAGTTCTAGGCAAAGGAGCTTTCAAAGAAGTATACAGAGCATTT 120
Query 121 GACCAACTTGAAGGAATCGAAGTGGCTTGGAACCAAGTTAAGTTAGATGATAAATTCTGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACCAACTTGAAGGAATCGAAGTGGCTTGGAACCAAGTTAAGTTAGATGATAAATTCTGT 180
Query 181 AGCTCAGAGGATTTAGATCGTCTTTACTCTGAAGTTCACTTACTCAAAACCCTTAAACAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCTCAGAGGATTTAGATCGTCTTTACTCTGAAGTTCACTTACTCAAAACCCTTAAACAC 240
Query 241 AAAAGCATCATCAAATTCTACACTTCTTGGATCGATCACCAACACATGACTATCAATCTC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 AAAAGCATCATCAAATTCTACACTTCTTGGATCGATCACCAACACATGACCATTAATCTC 300
Query 301 ATCACCGAAGTCTTCACTTCCGGAAATCTTAGACAGTACCGGAAGAAACATAAGTGTGTT 360
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 301 ATCACCGAAGTCTTCACTTCTGGAAATCTTAGACAGTACCGGAAGAAGCATAAGTGTGTT 360
Query 361 GATCTAAGAGCATTGAAGAAATGGTCAAGGCAGATCTTAGAAGGGCTTGTTTATCTACAT 420
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 361 GATCTAAGAGCATTGAAGAAATGGTCAATGCAGATTTTAGAAGGGCTTGTTTATCTACAT 420
Query 421 AGCCATGATCCTCCTGTGATCCATAGAGATCTTAAATGTGATAACATTTTCATTAATGGG 480
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGTCATGATCCTCCTGTGATCCATAGAGATCTAAAATGTGATAACATTTTCATTAATGGG 480
Query 481 AACCAAGGTGAGGTCAAAATTGGAGATCTAGGGCTAGCCGCGATTCTGCACCGCGCTCGC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AACCAAGGTGAGGTCAAAATTGGAGATCTAGGGCTAGCCGCGATTCTGCACCGGGCTCGC 540
Query 541 TCTGCTCATAGCGTCATCGGAACTCCTGAATTTATGGCGCCGGAACTCTATGAAGAGGAC 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCAGCTCATAGCGTCATCGGAACTCCTGAATTTATGGCGCCGGAACTCTATGAAGAGGAC 600
Query 601 TATAATGTACTTGTCGATATCTACGCGTTTGGAATGTGTTTGCTTGAGCTGGTAACTTTT 660
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TATAATGTACTTGTCGATATATACGCGTTTGGGATGTGTTTGCTTGAGCTGGTAACTTTT 660
Query 661 GAATACCCGTATTCCGAATGCACAAATGCTGCTCAGATTTATAGGAAAGTTACATCGGGA 720
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GAATACCCGTATTCTGAATGCACCAATGCTGCTCAGATTTATAGGAAAGTTACATCGGGA 720
Query 721 ATCAAACCAGCCGCTCTTTTAAATGTGACTGATCCGCAAGTGAGAGCATTCATAGAGAAG 780
||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 721 GTCAAACCAGCCTCTCTTTTAAATGTGACTGATCCTCAAGTGAGAACATTCATAGAGAAG 780
Query 781 TGTATCGCAAAGGTCTCGCAACGCTTGTCAGCCAAGGAACTACTTGATGATCCTTTTCTG 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGTATCGCAAAGGTCTCACAACGCTTGTCAGCCAAGGAACTACTTGATGATCCTTTTCTG 840
Query 841 AAATGCTACAAGGAAAATACCGAAAAC-GTCAGCTCTCACAAAGAAAATGGTTACAACGG 899
||||||||||| ||||| ||||||| | |||| |||||||||||||||||| ||||||||
Sbjct 841 AAATGCTACAATGAAAAGACCGAAA-CTGTCAACTCTCACAAAGAAAATGGCTACAACGG 899
Query 900 AAACGGAATCGTGGATAAACTCTCGGATTCTGAGGTAGGCTTATTAACCGTAGAAGGCCA 959
||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||
Sbjct 900 AAACGGAATCGTGGATACACTCTCGGATTCCGAGGTAGGCTTACTAACCGTAGAAGGCCA 959
Query 960 ACGTAAAGACCTCAACACAATCTTCCTAAAACTACGTATCACCGATTCCAAAGGTCAAAT 1019
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 ACGTAAAGACCTCAACACAATCTTCCTAAAACTACGAATCACCGATTCCAAAGGTCAAAT 1019
Query 1020 CCGCAATATCCACTTCCCATTTAACATAGAGACAGACACATCTTTCTCAGTCGCCATCGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCGCAATATCCACTTCCCATTTAACATAGAGACAGACACATCTTTCTCAGTCGCCATCGA 1079
Query 1080 AATGGTCGAAGAACTAGACTTAACCGATGATCAAGACATCTCAACGATAGCTAAAATGAT 1139
||||||||||||| |||||||||||||||| |||||||||||||| || | |||||||||
Sbjct 1080 AATGGTCGAAGAATTAGACTTAACCGATGACCAAGACATCTCAACAATCGTTAAAATGAT 1139
Query 1140 CGACACAGAGATACATTCACACATCCCCGATTGGACCCCTTCTCGACTTATCGGTGATGA 1199
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1140 CGACACAGAGATACATTCACACATCCCCGATTGGATCCCTTCTCGTCTTATCGGTGATGA 1199
Query 1200 TTCAGCGGTACAAAAATGTTTGTCTTCTCCAGAGACGCTCCATTTAGATAGATTTCCTTC 1259
|||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1200 TTCAGCGGTACACAAATGTTTGTCTTCTCCAGAAACGCTGCATTTAGACAGATTTCCTTC 1259
Query 1260 AGGGAGAAAATTCTGGTCCTCTCCTAAAGCTGGAGCTGGAGACTCACGTTCACCGTTTGC 1319
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1260 AGGGAGAAAATTCTGGTCCTCTCCTAAAGCTGGAGCTGGAGATTCACGTTCACCGTTCGC 1319
Query 1320 GCCACGGTCTAATTCTAAGTTGTCGTCAGCACAAGGACCGATCAATCAAGAAGTTGGGGT 1379
|||||| |||||||||||| |||| ||| ||| | | |||||||||| ||||| ||
Sbjct 1320 GCCACGATCTAATTCTAAGCTGTCTTCATCACCA--A----TCAATCAAGACGTTGGAGT 1373
Query 1380 TATAGTagagaaacttgagtctttgttgaggaaacagagagaggagattgaagagatgca 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TATAGTAGAGAAACTTGAGTCTTTGTTGAGGAAACAGAGAGAGGAGATTGAAGAGATGCA 1433
Query 1440 gagagaTCAAGAACGTATTGTTACTGAGTTCTTAAAAGAGTTTCCTCCTGAGATTTGTGA 1499
|||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 1434 GAGAGATCAAGAACGTATAGTTTCTGAGTTTTTGAAAGAGTTTCCTCCTGAGATTTGTGA 1493
Query 1500 AGAGGCTTTGGTGAGATTGCAAGTTAAAGATTCTGATAACTTATTGTGTTAG 1551
|||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1494 AGAGGCTTTGGTGAGATTGCAAGTTAAAGATTCTGATAGCTTACTGTGTTAG 1545
> Ahg905276 jgi|Araly1|905276|Al_scaffold_0003_2404
Length=1788
Score = 272 bits (147), Expect = 5e-72
Identities = 527/705 (75%), Gaps = 47/705 (7%)
Strand=Plus/Plus
Query 37 GTTGAGATTGATCCCACTGGTCGCTATGGCCGGTATAAAGAAGTTCTAGGCAAAGGAGCT 96
|||||||||||||| |||| | ||||| | || | ||||| || |||||||||||
Sbjct 43 GTTGAGATTGATCCTTCTGGAAGATATGGAAGATACGATGAAGTACTTGGCAAAGGAGC- 101
Query 97 TTCAAAGA-AGTATACAGAGCATTTGACCAACT-TGAAGGAATCGAAGTGGCTTGGAACC 154
|||||||| |||||||||||| ||||| | | |||||| || ||||| || |||||||
Sbjct 102 TTCAAAGACAGTATACAGAGCTTTTGA-TGAGTATGAAGGGATTGAAGTAGCATGGAACC 160
Query 155 AAGTTAAG-TTAGATGATAAATTCTGTA-G-CT-CAGAGGATTTAGA-TCGTCTTTACTC 209
|||| ||| || || || ||| | | | | ||||| |||| || ||| ||
Sbjct 161 AAGTAAAGCTT---CGA-AATTTCACAAGGAATCCTGAGGAACTAGAGAAGT-TTT--TC 213
Query 210 TGA-AG-TTCA-CTTACTCAAAACCCTT-AAACA-CAAAAGCATCATCAAATTCTACACT 264
|| || |||| ||| ||||| | | || || || ||||| ||| || ||||||||||||
Sbjct 214 AGAGAGATTCATCTT-CTCAAGA-CTTTGAATCATCAAAA-CATTATGAAATTCTACACT 270
Query 265 TCTTGGATCGATCACCAACACA-TGA-CTATCAATCTCATCACCGAAGTCTTCACTTCCG 322
|||||| | ||| ||||||| | | | | |||||| | |||| ||| |||| || || |
Sbjct 271 TCTTGGGTTGAT-ACCAACA-ATTTATCAATCAATTTTGTCACTGAACTCTTTACCTCTG 328
Query 323 GAAATCTTAGACAGTACCGGAAGAAACATAAG-TGTGTTG-ATCTAAGAGCATTGAAGAA 380
| | |||||||||||| || || |||| || | | || || | |||||| ||||| |
Sbjct 329 GTACTCTTAGACAGTATAGGTTGAGACAT-AGAAGAG-TGAATATTAGAGCAGTGAAGCA 386
Query 381 ATGGT-CAAGGCAGATCTTAGAAGGGCTTGTTTATCTACATAGCCATGATCCTCCTGTGA 439
||||| ||| |||||| ||| |||||||| ||||||| ||||| | | ||| || | |
Sbjct 387 ATGGTGCAA-GCAGATTTTAAAAGGGCTTCTTTATCTTCATAGTCGTTCTCCACCAATTA 445
Query 440 TCCATAGAGATCTTAAATGTGATAACATTTTCATTAATGGGAACCAAGGTGAGGTCAAAA 499
| ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||| |
Sbjct 446 TTCATAGAGATCTTAAATGTGATAACATTTTTATCAATGGAAACCAAGGTGAAGTCAAGA 505
Query 500 TTGGAGATCTAGGGCTAGCCGCGATTCTGC--ACCGCGC-TCGCTCTGCTCATAGCGTCA 556
| || || || || || || |||||||| | | | | | ||| | || | ||||
Sbjct 506 TCGGCGACCTTGGACTCGCTGCGATTCTTCGTAAATCACAT-GCTGT--TCGTTGCGT-- 560
Query 557 TCGGAACTCCTGAATTTATGGCGCCGGAACTCTATGAAGAGGACTATAATGTACTTG-TC 615
| ||||| ||||| |||||||| || ||| | ||||| ||||| ||||||| | ||| |
Sbjct 561 T-GGAACCCCTGAGTTTATGGCTCCAGAAGTGTATGATGAGGAATATAATG-AGTTGGTT 618
Query 616 GATATCTACGCGTTTGGAATGTGTTTGCTTG-AGCTGGTAACTTTTGAATACCCGTATTC 674
||| | || || |||||||||||| || ||| || |||| ||||| || || ||||||
Sbjct 619 GATGTATATGCTTTTGGAATGTGTGTG-TTGGAGATGGTTACTTTCGATTATCCGTATAG 677
Query 675 CGAATGCACAAATGCTGCTCAGATTTATAGGAAAGTTACATCGGG 719
|||||| || | | || || || || | ||||||||| |||||
Sbjct 678 CGAATGTACTCACCCGGCACAAATCTACAAGAAAGTTACCTCGGG 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58087623625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5