BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48280.1 Length=1649 Score E Sequences producing significant alignments: (Bits) Value Ahg485189 jgi|Araly1|485189|fgenesh2_kg.5__1181__AT3G48280.1 2518 0.0 Ahg937586 jgi|Araly1|937586|scaffold_501777.1 1327 0.0 Ahg485191 jgi|Araly1|485191|fgenesh2_kg.5__1183__AT3G48310.1 1177 0.0 Ahg485188 jgi|Araly1|485188|fgenesh2_kg.5__1180__AT3G48270.1 1098 0.0 Ahg897677 jgi|Araly1|897677|Al_scaffold_0005_1643 1048 0.0 > Ahg485189 jgi|Araly1|485189|fgenesh2_kg.5__1181__AT3G48280.1 Length=1617 Score = 2518 bits (1363), Expect = 0.0 Identities = 1540/1624 (95%), Gaps = 18/1624 (1%) Strand=Plus/Plus Query 23 aaaaaaaTGATGATGATGATAATTCTCTTGTGGTCAATAATTTTCATGACCATTCTCTTC 82 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAGAAATGATGATGATGATACTTCTCTTGTGGTCAATAATTTTCATGACCATTCTCTTC 60 Query 83 TTaaaaaaaCAGTTGAGTGGGAAGAAAGGTAAGACACCTCCGTCACCACCGGGACTTCCG 142 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTAAAAAAAAAGTTGAGTGGGAAGAAAGGTAAGACACCTCCGTCACCACCGGGACTTCCG 120 Query 143 TTGATCGGAAACCTTCATCAGCTCGGCCGCCACACTCACCGATCACTATGCGATCTCAGT 202 ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 121 TTGATCGGAAACCTTCATCAGCTCGGCCGTCACACTCACCGATCACTATGCTCTCTCAGT 180 Query 203 CGCCGTTACGGTCCTCTCATGCTCCTTCACTTAGGTCGTGTCCCCGTTCTTATAGTCTCT 262 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 181 CGCCGTTACGGTCCTCTTATGCTCCTTCACTTAGGCCGTGTCCCCGTTCTTATAGTCTCT 240 Query 263 TCCGCGGACATGGCTCAAGAAATCTTGAAGACGCACGACCAAGCTTTCGCAAACCGCCCA 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCGCGGACATGGCTCAAGAAATCTTGAAGACGCACGACCAAGCTTTCGCAAACCGCCCA 300 Query 323 CGGTCAAAACTCTCCCAGAAGCTTCTTTACAACAATCGTGATGTGGCCTCAGCTCCTTAT 382 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 301 CGGTCAAAACTCTCCCAGAAGCTTCTTTACAACAATCGCGATGTGGCCTCAGCTCCTTAT 360 Query 383 GGAGAGTATTGGAGGCAAATGAAGTCCGTGTGCGTCATTCATCTCTTAAGCAACAAAATG 442 |||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| Sbjct 361 GGAGAGTATTGGAGGCAAATGAAGGCTGTGTGCACCATTCATCTCTTAAGCAACAAAATG 420 Query 443 GTACGATCTTTTCGAGATGTAAGAGAAGAAGAAATCACTTTGATGATGGCA-AAAATCCG 501 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 421 GTACGATCTTTTCGAGATGTAAGAGAAGAAGAAATCACTTTGATGATGG-AGAAAATCCG 479 Query 502 GAAATCGAGTTCTTTGCCGTTTAATGTAAGCAAGGTCTTGGAGTGTTTGACCAACGATGT 561 ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 480 GAAATCGAGTTCTTTGCCGTTTAATGTAAGCAAGGTCTTGGAGAGTTTAACTAACGATGT 539 Query 562 GATATGTAGAGTCGCTTTGGGACGGAAATATGGTGGTGAAACTGACTTTAAGAAGTTAAC 621 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GATATGTAGAGTGGCTTTAGGACGGAAATATGGTGGTGAAACTGACTTTAAGAAGTTAAC 599 Query 622 GGATAGACTAAGCGAGCTATTGGGAACGTTTAGTATAGGGAGTTTTGTACCGTGGCTCGC 681 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 600 GGATAGACTAAGCGAGCTATTGGGAACATTTAGTATAGGGAGTTTTGTACCGTGGCTTGC 659 Query 682 GTGGGTTGATTGGATCCGCGGTTGGGATGCTCAGCTAGATAAGATGGGAAAGGATCTTGA 741 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GTGGATTGATTGGATCCGCGGTTGGGATGCTCAGCTAGATAAGATGGGAAAGGATCTTGA 719 Query 742 TGACTTCTTTGAGAAAGTTGTGCAAGATCATGAAGATGGTGACCGCCGAGATGGGACTGA 801 ||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||| Sbjct 720 TGACTTCTTTGAGAAAGTTGTGCAAGATCATGAAGATGGCGACAACCGAGATAGGTTTGA 779 Query 802 TTTGATTGATGCATTGCTCAGGGTTAAAAGAGAAAAGAGTCCCGGGTTTGAGATAGAGCG 861 ||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 780 CTTGATCGATGCATTGCTCAAAGTTAAAAGAGAGAAGAGTCCCGGGTTTGAGATAGAGCG 839 Query 862 AGTCAGCATAAAGGCAATCACGTTGGATGTTTTTGTGGGTGGTTCGGACACATCGTTCAC 921 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 840 AGTCAGCATAAAGGCAATCACGTTGGATGTTTTTGTGGGTGGTTCCGACACATCGTTCAC 899 Query 922 GCTTTTGGAATGGGCAATGACAGAGCTTCTACGTCATCC-GA-AGTCTCTGAACAGACTC 979 |||||||||||||||||||||||||||||||||||| || || ||||| ||| |||||| Sbjct 900 GCTTTTGGAATGGGCAATGACAGAGCTTCTACGTCACCCAGAGAGTCT--GAAAAGACTC 957 Query 980 CAAGAAGAAGTCCGTACGATTTGTAAGGGGAAGTCAAGAGTATCTGAAGATGACATTCAA 1039 ||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||| || Sbjct 958 CAAGAAGAAGTGCGTACGATTTGTAAGGGCAAATCAAGTGTATCAGAAGATGACATTAAA 1017 Query 1040 GGAATGAAATACTTAAAAGCTGTGATCAAAGAGGCACTCAGGCTACATCCTCCATTTCCA 1099 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1018 GAAATGAAATACTTAAAAGCTGTCATCAAAGAGGCACTCAGGCTACATCCTCCATTTCCA 1077 Query 1100 ATGATGGCTCCTCATGAATCAACAGAAGATGTTAAATTAAGAGACTACCACATACCAGCC 1159 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1078 ATGATGGCTCCTCATGAATCAACAGAAGATGTCAAATTAAGAGACTACCACATACCTGCC 1137 Query 1160 GGTACACAAGTGATGATGAATGCTTGGGCGATCGGGAGAGAGGTTGCCACATGGGGACCA 1219 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1138 GGTACACAAGTGATGATGAATGCTTGGGCCATCGGGAGAGAGGTTGCGACATGGGGACCA 1197 Query 1220 GACGCGGAGGAGTTCAAACCGGAGAGGCATTTAGATACGTCTGTTGATTTCCGAGGTCAA 1279 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1198 GACGCGGAGGAGTTTAAACCGGAGCGGCATTTAGATACGTCTGTTGATTTCCGAGGTCAC 1257 Query 1280 AACTTTGAGCTGCTTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAGTATCATTCGCT 1339 || ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1258 AATTTTGAGCTGATTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAATATCATTCGCA 1317 Query 1340 GTGGTATTGAATGAGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATTGGAAACTACCG 1399 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1318 GTGGTCTTGATTGAGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATTGGAAATTACCG 1377 Query 1400 GAGGAATCTAAAGAAGACAAAACTGATGTCGCTGAATCCAGCGGTTTTTCGGTTCACCGC 1459 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1378 GAGGAATCTAAAGAAGACAAAACCGATGTCGCTGAATCCAGCGGTTTTTCGGTTCACCGC 1437 Query 1460 GAGTTCCCTCTTTATGCCGTTGCATCACCTTACTTGACTTAGGCATTTATATATATTAAT 1519 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 1438 GAGTTCCCTCTTTATGCCATTGCATCACCTTACTTGACCTAGGCATTTATATATATTAAT 1497 Query 1520 GCTTTGGTATGTTATGTTGTGGATCT-TTCTC-TT-C-----ATGGATTCTGGTTTTATA 1571 |||||| ||||||||||||||||| | |||| || | |||| |||||||||| | Sbjct 1498 GCTTTGTTATGTTATGTTGTGGATTTGTTCTGATTTCTCGCCATGGGTTCTGGTTTT-T- 1555 Query 1572 TATGTGTTTTTCTTCTCTAAGTTGTTTTCGTTAATTGTTATGTGATTTTAGTTATTTTAG 1631 | | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1556 T-T-TGCTTTTCTTCTCTAAGTTGTTTTCGTTAATTGTTATGTGATTTTAGTTATTTTAA 1613 Query 1632 TCAA 1635 |||| Sbjct 1614 TCAA 1617 > Ahg937586 jgi|Araly1|937586|scaffold_501777.1 Length=1522 Score = 1327 bits (718), Expect = 0.0 Identities = 1259/1516 (83%), Gaps = 54/1516 (4%) Strand=Plus/Plus Query 27 aaaTGATGATGATGATAATTCTCTTGTGGTCAATAAT-TTTCATGACCATTCTCTTC-TT 84 |||||||| | |||||| ||||| |||| |||||||| ||| || |||| ||||||| || Sbjct 31 AAATGATGTTCATGATACTTCTCATGTGCTCAATAATCTTT-ATTACCACTCTCTTCTTT 89 Query 85 a-aaa--aaaCAGTTGAGTGGGAAGAAAGGTAAGACACCTCCGTCACCACCGGGACTTCC 141 | ||| ||| | || | |||||||| | || |||||||||||||||||| ||||||| Sbjct 90 ATAAACCAAA-A-TTCA--AGGAAGAAAAGCAACACACCTCCGTCACCACCGAGACTTCC 145 Query 142 GTTGATCGGAAACCTTCATCAGCTCGGCCGCCACACTCACCGATCACTATGCGATCTCAG 201 ||||| ||||||||||| ||||||||||| ||| ||||||||||||||||| |||||| Sbjct 146 TTTGATAGGAAACCTTCACCAGCTCGGCCGTCACCCTCACCGATCACTATGCTCTCTCAG 205 Query 202 TCGCCGTTACGGTCCTCTCATGCTCCTTCACTTAGGTCGTGTCCCCGTTCTTATAGTCTC 261 | |||||| |||||||| |||||||| ||||| || |||||||| |||||| ||||||| Sbjct 206 CCACCGTTATGGTCCTCTTATGCTCCTCCACTTGGGCCGTGTCCCGGTTCTTGTAGTCTC 265 Query 262 TTCCGCGGACATGGCTCAAGAAATCTTGAAGACGCACGACCAAGCTTTCGCAAACCGCCC 321 |||||| ||| |||||| ||| | ||||||||||| || | || ||| || | ||| || Sbjct 266 TTCCGCTGACGTGGCTCGAGACGTTTTGAAGACGCATGATCGAGTTTTTGCTAGCCGTCC 325 Query 322 ACGGTC-AAAACTCTCCCAGAAGCTTCTTTACAACAATCGTGATGTGGCCTCAGCTCCTT 380 | |||| |||| | || |||||||||||||| || ||||||||||||| |||||||| Sbjct 326 ATGGTCTAAAAAT-ACCGAGAAGCTTCTTTACGACGGGCGTGATGTGGCCTTAGCTCCTT 384 Query 381 ATGGAGAGTATTGGAGGCAAATGAAGTCCGTGTGCGTCATTCA-TCT-CTTAAGCAACAA 438 |||||||||| ||||||||||||||| ||||||||| ||| | | | | |||||||| Sbjct 385 ATGGAGAGTACTGGAGGCAAATGAAGAGTGTGTGCGTC-CTCAGTTTGC-TCAGCAACAA 442 Query 439 AATGGTACGATCTTTTCGAGATGTAAGAGAAGAAGAAATCACT-TTGATGATGGCA-AAA 496 |||||||||||| ||||||||||| ||| || |||| |||| | || ||||||| | || Sbjct 443 AATGGTACGATCCTTTCGAGATGTGAGACAACAAGAGATCAGTCTT-ATGATGG-AGAAG 500 Query 497 ATCCGGAAATCGAGTTCTTTGCCGTTTAATGTAAGCAAGGTCTTGGAGTGTTTGACCAAC 556 ||| || ||||||||||||||| | | ||| ||||| || |||||| | |||| || || Sbjct 501 ATCGGGCAATCGAGTTCTTTGCAGGTGAATCTAAGCGAGATCTTGGCGAGTTTAACGAAT 560 Query 557 GATGTGATATGTA-GAGTCGCTTTGGGACGGAAATATGGTGGTGAAACTGACTTTAAGAA 615 ||||||||||||| || | |||||||||||||||||||| |||||||| || |||||| | Sbjct 561 GATGTGATATGTAGGA-TTGCTTTGGGACGGAAATATGGCGGTGAAACAGATTTTAAGGA 619 Query 616 GTTAACGGATAGACTAAGCGA-GCTATT-GGGAACGTTTAGTATAGGG-AGTTTTGTACC 672 ||||| | | || || | | | ||| || ||| || ||||| | ||| | | |||||| Sbjct 620 GTTAATGAAGAGGCTTA-CAAGGCTTTTAGGG-GCGGTTAGTGT-GGGAAATCATGTACC 676 Query 673 GTGGCTCGCGTGGGTTGATTGGATCCGCGGTTGGGATGCTCAGCTAGATAAGATGGGAAA 732 ||||| || ||| |||||||| || |||||| ||||| ||||||||| |||| | |||| Sbjct 677 ATGGCTTGCATGGATTGATTGGCTCTGCGGTTTGGATGGTCAGCTAGAAAAGACGAGAAA 736 Query 733 GGATCTTGATGA-CTTCTTTGAGAAAGTTGTGCAAGATCATGAAGATGGTGACCGCCGAG 791 ||||||||||| ||| |||||| ||||||||||||||||| |||| || | || ||| Sbjct 737 TGATCTTGATGAGTTTC-TTGAGAGAGTTGTGCAAGATCATGTAGAT-GTCAACG--GAG 792 Query 792 ATGGGACTGATTT-GATTGATGCATTGCTCAG-GGTTAAAAGAGAAAAGAGTCCCGGGTT 849 || |||||||||| | | |||| ||||||| | || | ||||| |||||| ||||| Sbjct 793 ATAGGACTGATTTCG-TCGATGTATTGCTC-GCCATTCAGAGAGAGAAGAGTGTGGGGTT 850 Query 850 TGAGATAGAGCGAGTCAGCATAAAGGCAATCA-CGTTGGATGTTTTTGTGGGTGGTTCGG 908 |||||| || || ||||||||||||||||||| | |||||| |||||||||||||| ||| Sbjct 851 TGAGATCGACCGCGTCAGCATAAAGGCAATCATC-TTGGATATTTTTGTGGGTGGTACGG 909 Query 909 ACACATCGTTCACGCTTTTGGAATGGGCAATGACAGAGCTTCTACGTCATCCGA-AGTCT 967 ||||||||| ||| ||| ||||||||| ||||||||||||| ||| ||| || | ||| | Sbjct 910 ACACATCGTACACACTTATGGAATGGGTAATGACAGAGCTTTTACATCA-CCCAGAGTGT 968 Query 968 CTGAACAGACTCCAAGAAGAAGTCCGTACGATTTGTAAGGGGAAGTCAAGAGTATCTGAA 1027 ||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| ||| Sbjct 969 CTGAAGAGACTTCAAGAAGAAGTCCGTACGATTTGTAAGGGCAAATCAAGTGTATCAGAA 1028 Query 1028 GATGACATTCAAGGA-ATGAAATACTTAAAAGCTGTGATCAAAGAGGCACTCAGGCTACA 1086 || |||||| || || ||||| |||||||||||||||||||||||| || | |||||||| Sbjct 1029 GAAGACATT-AAAGACATGAACTACTTAAAAGCTGTGATCAAAGAGACAATGAGGCTACA 1087 Query 1087 TCCTCCATTTCCAATGATGGCTCCTCATGAATCAACAGAAGATGTTAAATTAAGAGACTA 1146 ||||||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 1088 TCCTCCACTTCCATTGATGGTTCCTCATGAATCAACACAAGATGTTAAATTAAGAGACTA 1147 Query 1147 CCACATACCAGCCGGTACACAAGTGATGATGAATGCTTGGGCGATCGGGAGAGAGGTTGC 1206 ||||||||||||||| ||| || ||||| ||||| ||||||||||||||||||| ||| Sbjct 1148 CCACATACCAGCCGGAACAGTGGTTATGATCAATGCATGGGCGATCGGGAGAGAGGCTGC 1207 Query 1207 CACATGGGGACCAGACGCGGAGGAGTTCAAACCGGAGAGGCATTT-AGATACGTCTGTTG 1265 ||||||||||||||| |||||||||| | ||||||||| ||||| | || | ||||||| Sbjct 1208 GACATGGGGACCAGACCCGGAGGAGTTTAGACCGGAGAGACATTTCA-ATTCTTCTGTTG 1266 Query 1266 ATTTCCGAGGTCAAAACTTTGAGCTGCTTCCATTTGGAGCAGGGAGAAGGATTTGTCCAG 1325 ||||||| ||||| | ||||||||| |||| ||||| ||||||||||| || || || | Sbjct 1267 ATTTCCGGGGTCAGGATTTTGAGCTGATTCCGTTTGGGGCAGGGAGAAGAATATGCCCGG 1326 Query 1326 CAGTATCATTCGCTGTGGTATTGAATGAGGTGGTTTTGGCTAACTTAGTGCATGGGTTTG 1385 || ||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||| Sbjct 1327 CAATATCATTTGCTGTGGTATTGAATGAAGAAGTTTTGGCTAACTTAGTGCATCGGTTTG 1386 Query 1386 ATTGGAAACTACCGGAGGAATCTAAAGAAGA-CAAA-AC-TGATGTCGCTGAATCCAGCG 1442 |||||| ||||||||| ||||||| ||||| |||| | || ||| |||||||| | || Sbjct 1387 ATTGGAGACTACCGGATGAATCTACGGAAGATCAAACAGGTGTTGTTGCTGAATCAACCG 1446 Query 1443 GTTTTTCGGTTCACCGCGA-GTTCCCTCTTTATGCCGTTGCATCACCT--TACTTGACTT 1499 | || | |||||||| | |||||||||||||||| |||||||| || ||||||||| Sbjct 1447 GAGTTGCCATTCACCGC-ATGTTCCCTCTTTATGCCATTGCATCATCTACTACTTGACTA 1505 Query 1500 AGGCATTTATATATAT 1515 |||| ||||||| ||| Sbjct 1506 AGGC-TTTATAT-TAT 1519 > Ahg485191 jgi|Araly1|485191|fgenesh2_kg.5__1183__AT3G48310.1 Length=1602 Score = 1177 bits (637), Expect = 0.0 Identities = 1229/1512 (81%), Gaps = 51/1512 (3%) Strand=Plus/Plus Query 28 aaT-GATGATGATGATAATTCT-CTTGTGGTCAATAAT-TTTCATGACCATTCTCTTCTT 84 ||| |||||| |||||| |||| | | | | |||||| ||| || ||||| ||||| || Sbjct 94 AATCGATGATCATGATACTTCTGC-TAAGCTTAATAATCTTT-ATTACCATCCTCTTTTT 151 Query 85 aaaaaaaCAGTTGAGTGGGAAGAAAGGTAAGACACC-TCCGTCACCACCGGGACTTCCGT 143 ||||||||| || ||||||||| | || ||||| | ||||||||||| || |||||| Sbjct 152 CAAAAAACAGAAAAGAGGGAAGAAAAGCAACACACCAT-CGTCACCACCGAGATTTCCGT 210 Query 144 TGATCGGAAACCTTCATCAGCTCGGCCGCCACACTCACCGATCACTATGCGATCTCAGTC 203 ||||||||||||||||||| || ||||||||| ||||||||||||||| | ||| || | Sbjct 211 TGATCGGAAACCTTCATCAACTTGGCCGCCACCCTCACCGATCACTATTCTCTCTGAGCC 270 Query 204 GCCGTTACGGTCCTCTCATGCTCCTTCACTTAGGTCGTGTCCCCGTTCTTATAGTCTCTT 263 |||||||||||||||||||||||| ||||| || ||||| || |||||| ||||||||| Sbjct 271 ACCGTTACGGTCCTCTCATGCTCCTCCACTTTGGACGTGTACCTGTTCTTGTAGTCTCTT 330 Query 264 CCGCGGACATGGCTCAAGAAATCTTGAAGACGCACGACCAAGCTTTCGCAAACCGCCCAC 323 |||| |||||||||| ||| || ||||| ||||| |||| | ||| || | || |||| Sbjct 331 CCGCAGACATGGCTCGAGATATTTTGAAAACGCATGACCGCGTTTTTGCTAGTCGTCCAC 390 Query 324 GGTCAAAACTCTCCCAGAAGCTTCTTTACAACAATCGTGATGTGGCCTCAGCTCCTTATG 383 ||||||| ||| |||||||| |||| ||| ||||||||||||| |||||| |||| Sbjct 391 AGTCAAAAATCTTTGAGAAGCTTTTTTATAACGCCCGTGATGTGGCCTTAGCTCCGTATG 450 Query 384 GAGAGTATTGGAGGCAAATGAAGTCCGTGTGCGTCATTCATCTCTTAAGCAACAAAATGG 443 |||| |||||||||||||||||| |||||||||| | || ||| | | ||||||||||| Sbjct 451 GAGAATATTGGAGGCAAATGAAGAGCGTGTGCGTCCTCCAGCTCCTCACCAACAAAATGG 510 Query 444 TAC-GATCTTTTCGAGATGTAAGAGAAGAAGAAATCACTTTGATGATGGCA-AAAATCCG 501 | | | || || ||| | || ||| ||||||| |||| | ||||||||| | || |||| Sbjct 511 T-CAGGTCCTTCCGAAACGTGAGACAAGAAGAGATCAGTCTGATGATGG-AGAAGATCCA 568 Query 502 GAAATCGAGTTCTTTGCCGTTTAATGTAAGCAAGGTCTTGGAGTGTTTGACCAACGATGT 561 |||||| |||||||||| | | ||| ||||| || |||||| | |||| || |||||||| Sbjct 569 GAAATCAAGTTCTTTGCGGGTGAATCTAAGCGAGCTCTTGGGGAGTTTAACTAACGATGT 628 Query 562 GATATGTAGAGTCGCTTTGGGACGGAAATATGGTGGTGAAACTGACTTTAAGAAGTTAAC 621 ||||| ||| || ||||||||||||||||| | | || || || |||||| |||||| Sbjct 629 GATATCTAGGGTTGCTTTGGGACGGAAATACAGCGTTGGTACGGATTTTAAGGAGTTAAT 688 Query 622 GGATAGACTAAGCGA-GCTATTGGG-AACGTTTAGTATAGGGAGTTTTGTACCGTGGCTC 679 ||| || || | ||| |||| |||| | ||||||| | |||| || | |||||||||| Sbjct 689 GGAAAGGCTCA-CGAGGCTACTGGGCGA-GTTTAGTGTGGGGACTTATATACCGTGGCTT 746 Query 680 GCGTGGGTTGATTGGATCCGCGGTTGGGATGCTCAGCTAGATAAGATGGGAAAGGATCTT 739 || ||| |||| |||||| | |||| ||||| |||||| | |||| || || |||||| Sbjct 747 GCATGGATTGACTGGATCAGTGGTTTGGATGGACAGCTAAAAAAGACAGGCAATGATCTT 806 Query 740 GATGACTTCTTTGAGAAAGTTGTGCAAGATCATGAAGATGGTGACCGCCGAGATGGGACT 799 ||||| ||||| ||||||||||| |||||||||| |||||| || || || | ||||| Sbjct 807 GATGAATTCTTGGAGAAAGTTGTCCAAGATCATGTAGATGGCGA-CG--GACAAAGGACT 863 Query 800 GA-TTTGATTGATGCATTGCTCAG-GGTTAAAAGAGAAAAGAGTC-CCGGGTTTGAGATA 856 || |||| | |||| |||||| | || | ||||| ||||| | |||||||| || Sbjct 864 GATTTTG-TGGATGTGTTGCTC-GCAATTCAGAGAGAGAAGAG-CGTTGGGTTTGAAATC 920 Query 857 GAGCGAG-TCAGCATAAAGGCAATC-ACGTTGGATGTTTTTGTGGGTGGTTCGGACACAT 914 || || | | ||||||||||| ||| | ||||||||| |||| |||||| |||| |||| Sbjct 921 GACCG-GTTAAGCATAAAGGCTATCGTC-TTGGATGTTGTTGTTGGTGGTACGGATACAT 978 Query 915 CGTTCACGCT-TT-TGGAATGGGCAATGACAGAGCTTCTACGTCATCCGA-AGTCTCTGA 971 || | | ||| || |||| |||||||||||||||||||| | || || | ||| ||||| Sbjct 979 CG-T-ATGCTCTTATGGAGTGGGCAATGACAGAGCTTCTTCTTC-GCCCAGAGTGTCTGA 1035 Query 972 ACAGACTCCAAGAAGAAGTCCGTACGATTTGTAAGGGGAAGTCAAGAGTATCTGAAGATG 1031 |||||||||| |||||||||||||||||||||||||| || | || ||||| ||||||| Sbjct 1036 ACAGACTCCAGGAAGAAGTCCGTACGATTTGTAAGGGTAATTTGAGTGTATCAGAAGATG 1095 Query 1032 ACATTCAAGGA-ATGAAATACTTAAAAGCTGTGATCAAAGAGGCACTCAGGCTACATCCT 1090 ||| |||| || ||||| ||||||||||||||||||| |||| ||||||||||| ||||| Sbjct 1096 ACA-TCAAAGACATGAACTACTTAAAAGCTGTGATCAGAGAGACACTCAGGCTATATCCT 1154 Query 1091 CCATTTCCAATGATGGCTCCTCATGAATCAACAGAAGATGTTAAATTAAGAGACTACCAC 1150 ||| ||||| |||||| |||||| ||||||||| ||||||| | |||| |||| |||||| Sbjct 1155 CCACTTCCATTGATGGTTCCTCACGAATCAACACAAGATGTCAGATTAGGAGATTACCAC 1214 Query 1151 ATACCAGCCGGTACACAAGTGATGATGAATGCTTGGGCGATCGGGAGAGAGGTTGCCACA 1210 ||||| | ||||||||| || ||||| ||||||||||||||||||||||||||||| || Sbjct 1215 ATACCTGTCGGTACACAGGTAATGATCAATGCTTGGGCGATCGGGAGAGAGGTTGCAACG 1274 Query 1211 TGGGGACCAGACGCGGAGGAGTTCAAACCGGAGAGGCATTTAGA-TACGTCTGT-TGATT 1268 ||||||||||||||||||||||| | |||||||||||||||||| | ||||| | ||||| Sbjct 1275 TGGGGACCAGACGCGGAGGAGTTTAGACCGGAGAGGCATTTAGAGT-CGTCT-TCTGATT 1332 Query 1269 TCCGAGGTCAAAACTTTGAGCTGCTTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAG 1328 |||| ||||| | |||||| || |||| || ||||||||||||||||| ||||||| | Sbjct 1333 TCCGGGGTCAGGATTTTGAGTTGATTCCGTTCGGAGCAGGGAGAAGGATGTGTCCAGGAA 1392 Query 1329 TATCATTCGCTGTGGTATTGAATGAGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATT 1388 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1393 TATCATTTGCTGTGGTATTGAATGAGGTGGTTTTGGCTAACTTAGTGCATCGGTATGATT 1452 Query 1389 GGAAACTACCGGAGGAATC-TAAAGAAGA-CAAAACTGATGTCGCTGAATCCAGCGGTTT 1446 ||| | |||| | || || || |||||| |||| | |||| |||||||| | |||| | Sbjct 1453 GGAGATTACCAGTTGA-TCATACAGAAGATCAAACCA-ATGTTGCTGAATCAACCGGTAT 1510 Query 1447 TTCGGTTCACCGCG-AGTTCCCTCTTTATGCCGTTGCATCACCT--TACTTGACTT-AGG 1502 || ||||||| | |||||||| || ||| |||||||| || ||||||| | ||| Sbjct 1511 GGCGATTCACCGTTTA-TTCCCTCTCTACGCCATTGCATCATCTACTACTTGA-TGGAGG 1568 Query 1503 CATTTATATATA 1514 || | ||||||| Sbjct 1569 CAGT-ATATATA 1579 > Ahg485188 jgi|Araly1|485188|fgenesh2_kg.5__1180__AT3G48270.1 Length=1371 Score = 1098 bits (594), Expect = 0.0 Identities = 983/1169 (84%), Gaps = 33/1169 (3%) Strand=Plus/Plus Query 344 CTTCTTTACAACAATCGTGATGTGGCCTCAGCTCCTTATGGAGAGTATTGGAGGCAAATG 403 |||||||| | || | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 CTTCTTTATGATAAACATGATGTGGCCTCAGCTCCTTATGGAGAGTATTGGAGGCAAATG 279 Query 404 AAGTCCGTGTGCGTCATTCATCTCTTAAGCAACAAAATGGTACGATCTTTTCGAGATGTA 463 ||| || |||||| | |||||||| ||||||||||||||||| || |||||||| || Sbjct 280 AAGAGTGTATGCGTCCTCCATCTCTTCAGCAACAAAATGGTACGGTCCTTTCGAGAAGTG 339 Query 464 AGAGAAGAAGAAATCACTTTGATGATGGCAAAA-ATCCGGAAATCGAGTTCTTTGCCGTT 522 ||||||||||| |||| | ||||||||| |||| ||||||||||||| |||||||||| | Sbjct 340 AGAGAAGAAGAGATCAGTGTGATGATGG-AAAATATCCGGAAATCGAATTCTTTGCCGGT 398 Query 523 TAATGTAAGCAAGGTCTTGGAGTGTTTGACCAACGATGTGATATGTAGAGTCGCTTTGGG 582 ||| ||||||| |||||| | |||| || |||||||||||||||||||| |||||||| Sbjct 399 AAATTTAAGCAAAATCTTGGTGAGTTTAACTAACGATGTGATATGTAGAGTTGCTTTGGG 458 Query 583 ACGGAAATATGGTGGTGAAACTG-ACTTTAAGAAGTTAACGGATAGACTAAGCGAGCTAT 641 ||||||||| ||||||||| || | |||||| |||||| ||| || ||||| |||||| Sbjct 459 ACGGAAATACGGTGGTGAAG-TGGATTTTAAGGAGTTAATGGAAAGGCTAAGTAAGCTAT 517 Query 642 TGGGAACGTTTAGTATAGGGAGTTTTGTACCGTGGCTCGCGTGGGTTGATTGGATCCGCG 701 |||| ||||||||| | ||||||| | |||||||||| || |||||||||||| || ||| Sbjct 518 TGGGGACGTTTAGTGTGGGGAGTTATATACCGTGGCTTGCCTGGGTTGATTGGGTCAGCG 577 Query 702 GTTGGGATGCTCAGCTAGATAAGATGGGAAAGGATCTTGATGACTTCTTTGAGAAAGTTG 761 ||| ||||| ||||||||| |||| || ||| ||||||||| | |||||||||| ||||| Sbjct 578 GTTTGGATGGTCAGCTAGAAAAGACGGCAAACGATCTTGATAAGTTCTTTGAGAGAGTTG 637 Query 762 TGCAAGATCATGA-AGATGGTGACCGCCGAGATGGGACTGATTT-GATTGATGCATTGCT 819 |||||||||||| | |||| || | |||| |||||||||| | | |||| |||||| Sbjct 638 TGCAAGATCATGTCA-ATGGCAACAG---AGATAGGACTGATTTTG-TGGATGTATTGCT 692 Query 820 CAGGGTTAAAAGAGAAAAGAGTCC-CGGGTTTGAGAT-AGAGCGAGTCAGCATAAAGGCA 877 | || | ||||| ||||| | ||||||||| || | | || |||||||||||||| Sbjct 693 CTCCATTCAGAGAGAGAAGAG-CGTCGGGTTTGAAATCA-ACCGTGTCAGCATAAAGGCT 750 Query 878 ATCA-CGTTGGATGTTTTTGTGGGTGGTTCGGACACATCGT-TCACGCTTTTGGAATGGG 935 ||| | ||||||||||||||||||||| |||||||||| | | || ||| ||||||||| Sbjct 751 ATCGTC-TTGGATGTTTTTGTGGGTGGTACGGACACATCATAT-ACACTTATGGAATGGG 808 Query 936 CAATGACAGAGCTTCTACGTCATCCGAAGTCTCTGAACAGACTCCAAGAAGAAGTCCGTA 995 ||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| Sbjct 809 CAATGACAGAGCTTCTACGTCATCCAAAGTGTCTGAACATACTCCAAGAAGAAGTCCGTA 868 Query 996 CGATTTGTAAGGGGAAGTC-AAGAGTATCTGAAGATGACATTCAAGGA-ATGAAATACTT 1053 |||| ||||||| | | | ||| ||||| ||||||||||| ||| || ||||| ||||| Sbjct 869 CGATATGTAAGGACA-GACCAAGTGTATCAGAAGATGACAT-CAAAGACATGAACTACTT 926 Query 1054 AAAAGCTGTGATCAAAGAGGCACTCAGGCTACATCCTCCATTTCCAATGATGGCTCCTCA 1113 ||||||||||||||| ||| ||||||||||||| ||||| ||||| ||||||||||||| Sbjct 927 AAAAGCTGTGATCAAGGAGACACTCAGGCTACACCCTCCCCTTCCATTGATGGCTCCTCA 986 Query 1114 TGAATCAACAGAAGATGTTAAATTAAGAGACTACCACATACCAGCCGGTACACAAGTGAT 1173 |||||||| ||||||| | ||||||||| ||||||||||| || |||||||| ||| | Sbjct 987 CGAATCAACCCAAGATGTCAGATTAAGAGATTACCACATACCTGCTGGTACACAGGTGTT 1046 Query 1174 GATGAATGCTTGGGCGATCGGGAGAGAGGTTGCCACATGGGGACCAGACGCGGAGGAGTT 1233 ||| ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| Sbjct 1047 GATCAATGCTTGGGCGATCGGGAGAGAGGCTGCGACATGGGGATCAGACGCGGAGGAGTT 1106 Query 1234 CAAACCGGAGAGGCATTTAGATACGTCTGTTGATTTCCGAGGTCAAAACTTT-GAGCTGC 1292 | ||| |||||||||||| || |||||||||||| ||| ||||| |||| |||||| Sbjct 1107 TAGACCAGAGAGGCATTTATATTCGTCTGTTGATTACCGGGGTCAGG-CTTTTGAGCTGA 1165 Query 1293 TTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAGTATCATTCGCTGTGGTATTGAATG 1352 |||| ||||||||||| ||||| ||||| |||||| |||||||||| |||| |||| || Sbjct 1166 TTCCGTTTGGAGCAGGAAGAAGAATTTGCCCAGCAATATCATTCGCAGTGGCGTTGATTG 1225 Query 1353 AGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATTGGAAACTACCGGAGGAATCTAAAG 1412 |||||| ||||||||||||||||||| ||| |||||||| | |||| | ||||||| || Sbjct 1226 AGGTGGCTTTGGCTAACTTAGTGCATCGGTATGATTGGAGATTACCAGTTGAATCTACAG 1285 Query 1413 AAGA-CAAAACTGATGTCGCTGAATCCAGC-GGTTTTTCGGTTCACCGCGA-GTTCCCTC 1469 |||| || | | ||||| |||||||| | | ||| || || | |||||| | ||| || | Sbjct 1286 AAGATCAGA-CGGATGTGGCTGAATCAA-CTGGTATTGCGATCCACCGC-ATGTTACCAC 1342 Query 1470 TTTATGCCGTTGCATCACCT--TACTTGA 1496 | || |||||||||||| || ||||||| Sbjct 1343 TCTACGCCGTTGCATCATCTACTACTTGA 1371 > Ahg897677 jgi|Araly1|897677|Al_scaffold_0005_1643 Length=1443 Score = 1048 bits (567), Expect = 0.0 Identities = 1069/1305 (82%), Gaps = 60/1305 (5%) Strand=Plus/Plus Query 121 TCCGTCACCACCGGGACTTCCGTTGATCGGAAACCTTCATCAGCTCGGCCGCCA-CACTC 179 ||| || |||||| |||| ||||||||||||||||||||||||||||||| || | ||| Sbjct 81 TCCATCCCCACCGAGACTACCGTTGATCGGAAACCTTCATCAGCTCGGCCAACATC-CTC 139 Query 180 ACCGATCACTATGCGATCTCAGTCGCCGTTACGGTCCTCTCATGCTCCTTCACTTAGGTC 239 |||||||||||||| ||||||| | |||||||||||||||||||||||| ||||| || Sbjct 140 ACCGATCACTATGCTATCTCAGCCACCGTTACGGTCCTCTCATGCTCCTCCACTTCGGAA 199 Query 240 GTGTCCCCGTTCTTATAGTCTCTTCCGCGGACATGGC-TCAAGA-A-ATCTTGAAGACGC 296 ||||||||||| || ||| |||| |||| || | || ||||| | || || ||||||| Sbjct 200 GTGTCCCCGTTATTGTAGCCTCTACCGCAGA-A--GCGGCAAGAGACATTTTAAAGACGC 256 Query 297 ACGACCAAGC--TTTCGCAAACCGCCCACGGTC-AAAACTCTCCCAGAAGCTTCTTTACA 353 | || ||| ||| |||| ||| |||||||| |||| ||| | | ||||||||||||| Sbjct 257 ATGA--TAGCGTTTTTGCAAGCCGTCCACGGTCGAAAA-TCTTCGAAAAGCTTCTTTACA 313 Query 354 ACAATCGTGATGTGGCCTCAGCTCCTTATGGAGAGTATTGGAGGCAAATGAAGTCCGTG- 412 ||| ||| || ||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 314 ACAGCCGTAATATGGCCTCAGCTCCTTATGGAGAGTATTGGAGACAAATGAAG--AGTGT 371 Query 413 T-GCGTCATTCATCTCTTAAGCAACAAAATGGTACGATCTTTTCGAGATGTAAGAGAAGA 471 | | || || |||||| | ||||||||||||||||| ||||||||||| || |||||||| Sbjct 372 TAGTGTTATCCATCTCCTCAGCAACAAAATGGTACGGTCTTTTCGAGAAGTGAGAGAAGA 431 Query 472 AGAAATCACTTTGATGATGGCAAAA-ATCCGGAAATCGAGTTCTTTGCCGTTTAATGTAA 530 ||| |||||| ||||||||| |||| ||||| |||||||||||| ||| | ||| | | Sbjct 432 AGAGATCACTCTGATGATGG-AAAAGATCCGAAAATCGAGTTCTAAACCGGTAAATCTTA 490 Query 531 GCAAGGTCTTG-GAGTGTTTGACCAACGATGTGATATGTAGAGTCGCTTTGGGACGGAAA 589 ||||| ||||| | |||| || |||||||| ||||||||||||||||||||||||||| Sbjct 491 GCAAGATCTTGTCA-AGTTTAACTAACGATGTTATATGTAGAGTCGCTTTGGGACGGAAA 549 Query 590 TATGGTGGTGAAACTGACTTT-AAGAAGTTAACGGATAGACT-AAGCGAGCTA-TTGGGA 646 || |||| || ||| || ||| ||| |||||| || ||||| | | | || | || || Sbjct 550 TACGGTGTTGGAACAGATTTTAAAG-AGTTAATAGACAGACTCATGAG-GCAACTT-GGT 606 Query 647 ACGTTTAGTATAGGGAGTTTTGTACCGTGGCTCGCGTGGGTTGATTGGATCCGCGGTTGG 706 ||||||| ||| ||||||| |||||||||||| |||||| ||||||| || |||||| | Sbjct 607 ACGTTTACTATCGGGAGTTATGTACCGTGGCTTGCGTGGACTGATTGGGTCAGCGGTTTG 666 Query 707 GATGCTCAG-CTAGATAAGATGGGAAAGGATCTTGATGA-CTTCTTTGAGA-AAGTTGTG 763 || |||| | || || |||| | || ||| ||||| | | |||| |||| || ||||| Sbjct 667 GAGGCTC-GACTGGAAAAGACCGCTAATGATTTTGATAAGC-TCTTGGAGAGAA-TTGTG 723 Query 764 CAAGATCATGAAGATGGTGACCGCCGAGATGGGACTGA-TTTGATTGATGCATTGCTCAG 822 || |||||||||||||| || || | | || |||||| |||| | |||| | | ||| | Sbjct 724 CAGGATCATGAAGATGGAGA-CGGC-A-ATAAGACTGATTTTG-TCGATGTACTACTC-G 778 Query 823 -GGTTAAAAGAGAAAAGAGTCCCGGGTTTGAGATAGAGCGAG-TCAGCATAAAGGCAATC 880 | | | ||||| |||||| |||||| || || || || | | ||||||||||||||| Sbjct 779 CAGCTCAGAGAGAGAAGAGTGTCGGGTTGGATATCGACCG-GTTAAGCATAAAGGCAATC 837 Query 881 -ACGTTGGATGTTTTTGTGGGTGGTTCGGACACATCGTTCACGCTTTTGGAATGGGCAAT 939 | ||||||| ||||||||||||| | |||||||| | ||| ||| ||||||||| ||| Sbjct 838 GTC-TTGGATGCTTTTGTGGGTGGTACAGACACATCCTCCACACTTGTGGAATGGGAAAT 896 Query 940 GACAGAGCTTCTACGTCATCCGAA-GTCTCTGAACAGACTCCAAGAAGAAGTCCGTACGA 998 ||||||||||||||| || || || || ||| || ||||| ||||||||||||||||| | Sbjct 897 GACAGAGCTTCTACGACA-CCCAACGTGTCTAAAAAGACTTCAAGAAGAAGTCCGTACAA 955 Query 999 TTTGTAAG-GGGAAGTCAAGAGTATCTGAAGATGACATTCAAGGAATGAAATACTTAAAA 1057 ||||| || || || ||||| ||||| |||||||||||| ||| |||||||||||||||| Sbjct 956 TTTGT-AGTGGCAAATCAAGTGTATCAGAAGATGACATTAAAGAAATGAAATACTTAAAA 1014 Query 1058 GCTGTGATCAAAGAGGCACTCAGGCTACATCCTCCATTTCCAATGATGGCTCCTCATGAA 1117 |||||| ||||||||||||| ||||||||||||||| ||||| |||||| |||||| || Sbjct 1015 GCTGTGGTCAAAGAGGCACTAAGGCTACATCCTCCAGTTCCATTGATGGTTCCTCACCAA 1074 Query 1118 TCAACAGAAGATGTTAAATTAAGAGACT-ACCACATACCAGCCGGTACACAAGTGATGA- 1175 ||| ||||||||| | |||||||| | |||| ||||| || ||||| || || || | Sbjct 1075 TCATTAGAAGATGTCAGGTTAAGAGA-TAACCATATACCGGCGGGTACGCAGGTTAT-AG 1132 Query 1176 TGAATGC-TTGGGCGATCGGGAGAGAGGTTGCCACATGGGGACCAGACGCGGAGGAGTTC 1234 | ||| | ||||||| |||||||||||| ||| || ||||||||||||||| | ||||| Sbjct 1133 TCAAT-CTTTGGGCGGTCGGGAGAGAGGCTGCAACGTGGGGACCAGACGCGAATGAGTTT 1191 Query 1235 AAACCGGAGAGGCATTTAGA-TACGTCTGT-TGATTTCCGAGGTCAAAACTTTGAGCTGC 1292 | |||||||||||||||||| | ||||| | ||||||||| ||||| | ||||| ||| Sbjct 1192 AGACCGGAGAGGCATTTAGAGT-CGTCT-TCTGATTTCCGGGGTCAGGATTTTGATCTGA 1249 Query 1293 TTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAGTATCATTCGCTGTGGTATTGAATG 1352 |||| || ||||||||||||||||| ||||||| | ||||||| |||||||| ||||||| Sbjct 1250 TTCCGTTCGGAGCAGGGAGAAGGATGTGTCCAGGAATATCATTTGCTGTGGTGTTGAATG 1309 Query 1353 AGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATTGGAAA-CTA 1396 |||||||||||||||||||||||||||||||||| ||| || ||| Sbjct 1310 AGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGACTGGCAATCTA 1354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61820467635 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5