BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48280.1
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485189 jgi|Araly1|485189|fgenesh2_kg.5__1181__AT3G48280.1 2518 0.0
Ahg937586 jgi|Araly1|937586|scaffold_501777.1 1327 0.0
Ahg485191 jgi|Araly1|485191|fgenesh2_kg.5__1183__AT3G48310.1 1177 0.0
Ahg485188 jgi|Araly1|485188|fgenesh2_kg.5__1180__AT3G48270.1 1098 0.0
Ahg897677 jgi|Araly1|897677|Al_scaffold_0005_1643 1048 0.0
> Ahg485189 jgi|Araly1|485189|fgenesh2_kg.5__1181__AT3G48280.1
Length=1617
Score = 2518 bits (1363), Expect = 0.0
Identities = 1540/1624 (95%), Gaps = 18/1624 (1%)
Strand=Plus/Plus
Query 23 aaaaaaaTGATGATGATGATAATTCTCTTGTGGTCAATAATTTTCATGACCATTCTCTTC 82
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAAATGATGATGATGATACTTCTCTTGTGGTCAATAATTTTCATGACCATTCTCTTC 60
Query 83 TTaaaaaaaCAGTTGAGTGGGAAGAAAGGTAAGACACCTCCGTCACCACCGGGACTTCCG 142
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAAAAAAAAAGTTGAGTGGGAAGAAAGGTAAGACACCTCCGTCACCACCGGGACTTCCG 120
Query 143 TTGATCGGAAACCTTCATCAGCTCGGCCGCCACACTCACCGATCACTATGCGATCTCAGT 202
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 121 TTGATCGGAAACCTTCATCAGCTCGGCCGTCACACTCACCGATCACTATGCTCTCTCAGT 180
Query 203 CGCCGTTACGGTCCTCTCATGCTCCTTCACTTAGGTCGTGTCCCCGTTCTTATAGTCTCT 262
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CGCCGTTACGGTCCTCTTATGCTCCTTCACTTAGGCCGTGTCCCCGTTCTTATAGTCTCT 240
Query 263 TCCGCGGACATGGCTCAAGAAATCTTGAAGACGCACGACCAAGCTTTCGCAAACCGCCCA 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCGCGGACATGGCTCAAGAAATCTTGAAGACGCACGACCAAGCTTTCGCAAACCGCCCA 300
Query 323 CGGTCAAAACTCTCCCAGAAGCTTCTTTACAACAATCGTGATGTGGCCTCAGCTCCTTAT 382
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CGGTCAAAACTCTCCCAGAAGCTTCTTTACAACAATCGCGATGTGGCCTCAGCTCCTTAT 360
Query 383 GGAGAGTATTGGAGGCAAATGAAGTCCGTGTGCGTCATTCATCTCTTAAGCAACAAAATG 442
|||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 361 GGAGAGTATTGGAGGCAAATGAAGGCTGTGTGCACCATTCATCTCTTAAGCAACAAAATG 420
Query 443 GTACGATCTTTTCGAGATGTAAGAGAAGAAGAAATCACTTTGATGATGGCA-AAAATCCG 501
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 421 GTACGATCTTTTCGAGATGTAAGAGAAGAAGAAATCACTTTGATGATGG-AGAAAATCCG 479
Query 502 GAAATCGAGTTCTTTGCCGTTTAATGTAAGCAAGGTCTTGGAGTGTTTGACCAACGATGT 561
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 480 GAAATCGAGTTCTTTGCCGTTTAATGTAAGCAAGGTCTTGGAGAGTTTAACTAACGATGT 539
Query 562 GATATGTAGAGTCGCTTTGGGACGGAAATATGGTGGTGAAACTGACTTTAAGAAGTTAAC 621
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GATATGTAGAGTGGCTTTAGGACGGAAATATGGTGGTGAAACTGACTTTAAGAAGTTAAC 599
Query 622 GGATAGACTAAGCGAGCTATTGGGAACGTTTAGTATAGGGAGTTTTGTACCGTGGCTCGC 681
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 600 GGATAGACTAAGCGAGCTATTGGGAACATTTAGTATAGGGAGTTTTGTACCGTGGCTTGC 659
Query 682 GTGGGTTGATTGGATCCGCGGTTGGGATGCTCAGCTAGATAAGATGGGAAAGGATCTTGA 741
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTGGATTGATTGGATCCGCGGTTGGGATGCTCAGCTAGATAAGATGGGAAAGGATCTTGA 719
Query 742 TGACTTCTTTGAGAAAGTTGTGCAAGATCATGAAGATGGTGACCGCCGAGATGGGACTGA 801
||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||
Sbjct 720 TGACTTCTTTGAGAAAGTTGTGCAAGATCATGAAGATGGCGACAACCGAGATAGGTTTGA 779
Query 802 TTTGATTGATGCATTGCTCAGGGTTAAAAGAGAAAAGAGTCCCGGGTTTGAGATAGAGCG 861
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 780 CTTGATCGATGCATTGCTCAAAGTTAAAAGAGAGAAGAGTCCCGGGTTTGAGATAGAGCG 839
Query 862 AGTCAGCATAAAGGCAATCACGTTGGATGTTTTTGTGGGTGGTTCGGACACATCGTTCAC 921
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 AGTCAGCATAAAGGCAATCACGTTGGATGTTTTTGTGGGTGGTTCCGACACATCGTTCAC 899
Query 922 GCTTTTGGAATGGGCAATGACAGAGCTTCTACGTCATCC-GA-AGTCTCTGAACAGACTC 979
|||||||||||||||||||||||||||||||||||| || || ||||| ||| ||||||
Sbjct 900 GCTTTTGGAATGGGCAATGACAGAGCTTCTACGTCACCCAGAGAGTCT--GAAAAGACTC 957
Query 980 CAAGAAGAAGTCCGTACGATTTGTAAGGGGAAGTCAAGAGTATCTGAAGATGACATTCAA 1039
||||||||||| ||||||||||||||||| || ||||| ||||| |||||||||||| ||
Sbjct 958 CAAGAAGAAGTGCGTACGATTTGTAAGGGCAAATCAAGTGTATCAGAAGATGACATTAAA 1017
Query 1040 GGAATGAAATACTTAAAAGCTGTGATCAAAGAGGCACTCAGGCTACATCCTCCATTTCCA 1099
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 GAAATGAAATACTTAAAAGCTGTCATCAAAGAGGCACTCAGGCTACATCCTCCATTTCCA 1077
Query 1100 ATGATGGCTCCTCATGAATCAACAGAAGATGTTAAATTAAGAGACTACCACATACCAGCC 1159
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1078 ATGATGGCTCCTCATGAATCAACAGAAGATGTCAAATTAAGAGACTACCACATACCTGCC 1137
Query 1160 GGTACACAAGTGATGATGAATGCTTGGGCGATCGGGAGAGAGGTTGCCACATGGGGACCA 1219
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1138 GGTACACAAGTGATGATGAATGCTTGGGCCATCGGGAGAGAGGTTGCGACATGGGGACCA 1197
Query 1220 GACGCGGAGGAGTTCAAACCGGAGAGGCATTTAGATACGTCTGTTGATTTCCGAGGTCAA 1279
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1198 GACGCGGAGGAGTTTAAACCGGAGCGGCATTTAGATACGTCTGTTGATTTCCGAGGTCAC 1257
Query 1280 AACTTTGAGCTGCTTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAGTATCATTCGCT 1339
|| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 AATTTTGAGCTGATTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAATATCATTCGCA 1317
Query 1340 GTGGTATTGAATGAGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATTGGAAACTACCG 1399
||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1318 GTGGTCTTGATTGAGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATTGGAAATTACCG 1377
Query 1400 GAGGAATCTAAAGAAGACAAAACTGATGTCGCTGAATCCAGCGGTTTTTCGGTTCACCGC 1459
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAGGAATCTAAAGAAGACAAAACCGATGTCGCTGAATCCAGCGGTTTTTCGGTTCACCGC 1437
Query 1460 GAGTTCCCTCTTTATGCCGTTGCATCACCTTACTTGACTTAGGCATTTATATATATTAAT 1519
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1438 GAGTTCCCTCTTTATGCCATTGCATCACCTTACTTGACCTAGGCATTTATATATATTAAT 1497
Query 1520 GCTTTGGTATGTTATGTTGTGGATCT-TTCTC-TT-C-----ATGGATTCTGGTTTTATA 1571
|||||| ||||||||||||||||| | |||| || | |||| |||||||||| |
Sbjct 1498 GCTTTGTTATGTTATGTTGTGGATTTGTTCTGATTTCTCGCCATGGGTTCTGGTTTT-T- 1555
Query 1572 TATGTGTTTTTCTTCTCTAAGTTGTTTTCGTTAATTGTTATGTGATTTTAGTTATTTTAG 1631
| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 T-T-TGCTTTTCTTCTCTAAGTTGTTTTCGTTAATTGTTATGTGATTTTAGTTATTTTAA 1613
Query 1632 TCAA 1635
||||
Sbjct 1614 TCAA 1617
> Ahg937586 jgi|Araly1|937586|scaffold_501777.1
Length=1522
Score = 1327 bits (718), Expect = 0.0
Identities = 1259/1516 (83%), Gaps = 54/1516 (4%)
Strand=Plus/Plus
Query 27 aaaTGATGATGATGATAATTCTCTTGTGGTCAATAAT-TTTCATGACCATTCTCTTC-TT 84
|||||||| | |||||| ||||| |||| |||||||| ||| || |||| ||||||| ||
Sbjct 31 AAATGATGTTCATGATACTTCTCATGTGCTCAATAATCTTT-ATTACCACTCTCTTCTTT 89
Query 85 a-aaa--aaaCAGTTGAGTGGGAAGAAAGGTAAGACACCTCCGTCACCACCGGGACTTCC 141
| ||| ||| | || | |||||||| | || |||||||||||||||||| |||||||
Sbjct 90 ATAAACCAAA-A-TTCA--AGGAAGAAAAGCAACACACCTCCGTCACCACCGAGACTTCC 145
Query 142 GTTGATCGGAAACCTTCATCAGCTCGGCCGCCACACTCACCGATCACTATGCGATCTCAG 201
||||| ||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 146 TTTGATAGGAAACCTTCACCAGCTCGGCCGTCACCCTCACCGATCACTATGCTCTCTCAG 205
Query 202 TCGCCGTTACGGTCCTCTCATGCTCCTTCACTTAGGTCGTGTCCCCGTTCTTATAGTCTC 261
| |||||| |||||||| |||||||| ||||| || |||||||| |||||| |||||||
Sbjct 206 CCACCGTTATGGTCCTCTTATGCTCCTCCACTTGGGCCGTGTCCCGGTTCTTGTAGTCTC 265
Query 262 TTCCGCGGACATGGCTCAAGAAATCTTGAAGACGCACGACCAAGCTTTCGCAAACCGCCC 321
|||||| ||| |||||| ||| | ||||||||||| || | || ||| || | ||| ||
Sbjct 266 TTCCGCTGACGTGGCTCGAGACGTTTTGAAGACGCATGATCGAGTTTTTGCTAGCCGTCC 325
Query 322 ACGGTC-AAAACTCTCCCAGAAGCTTCTTTACAACAATCGTGATGTGGCCTCAGCTCCTT 380
| |||| |||| | || |||||||||||||| || ||||||||||||| ||||||||
Sbjct 326 ATGGTCTAAAAAT-ACCGAGAAGCTTCTTTACGACGGGCGTGATGTGGCCTTAGCTCCTT 384
Query 381 ATGGAGAGTATTGGAGGCAAATGAAGTCCGTGTGCGTCATTCA-TCT-CTTAAGCAACAA 438
|||||||||| ||||||||||||||| ||||||||| ||| | | | | ||||||||
Sbjct 385 ATGGAGAGTACTGGAGGCAAATGAAGAGTGTGTGCGTC-CTCAGTTTGC-TCAGCAACAA 442
Query 439 AATGGTACGATCTTTTCGAGATGTAAGAGAAGAAGAAATCACT-TTGATGATGGCA-AAA 496
|||||||||||| ||||||||||| ||| || |||| |||| | || ||||||| | ||
Sbjct 443 AATGGTACGATCCTTTCGAGATGTGAGACAACAAGAGATCAGTCTT-ATGATGG-AGAAG 500
Query 497 ATCCGGAAATCGAGTTCTTTGCCGTTTAATGTAAGCAAGGTCTTGGAGTGTTTGACCAAC 556
||| || ||||||||||||||| | | ||| ||||| || |||||| | |||| || ||
Sbjct 501 ATCGGGCAATCGAGTTCTTTGCAGGTGAATCTAAGCGAGATCTTGGCGAGTTTAACGAAT 560
Query 557 GATGTGATATGTA-GAGTCGCTTTGGGACGGAAATATGGTGGTGAAACTGACTTTAAGAA 615
||||||||||||| || | |||||||||||||||||||| |||||||| || |||||| |
Sbjct 561 GATGTGATATGTAGGA-TTGCTTTGGGACGGAAATATGGCGGTGAAACAGATTTTAAGGA 619
Query 616 GTTAACGGATAGACTAAGCGA-GCTATT-GGGAACGTTTAGTATAGGG-AGTTTTGTACC 672
||||| | | || || | | | ||| || ||| || ||||| | ||| | | ||||||
Sbjct 620 GTTAATGAAGAGGCTTA-CAAGGCTTTTAGGG-GCGGTTAGTGT-GGGAAATCATGTACC 676
Query 673 GTGGCTCGCGTGGGTTGATTGGATCCGCGGTTGGGATGCTCAGCTAGATAAGATGGGAAA 732
||||| || ||| |||||||| || |||||| ||||| ||||||||| |||| | ||||
Sbjct 677 ATGGCTTGCATGGATTGATTGGCTCTGCGGTTTGGATGGTCAGCTAGAAAAGACGAGAAA 736
Query 733 GGATCTTGATGA-CTTCTTTGAGAAAGTTGTGCAAGATCATGAAGATGGTGACCGCCGAG 791
||||||||||| ||| |||||| ||||||||||||||||| |||| || | || |||
Sbjct 737 TGATCTTGATGAGTTTC-TTGAGAGAGTTGTGCAAGATCATGTAGAT-GTCAACG--GAG 792
Query 792 ATGGGACTGATTT-GATTGATGCATTGCTCAG-GGTTAAAAGAGAAAAGAGTCCCGGGTT 849
|| |||||||||| | | |||| ||||||| | || | ||||| |||||| |||||
Sbjct 793 ATAGGACTGATTTCG-TCGATGTATTGCTC-GCCATTCAGAGAGAGAAGAGTGTGGGGTT 850
Query 850 TGAGATAGAGCGAGTCAGCATAAAGGCAATCA-CGTTGGATGTTTTTGTGGGTGGTTCGG 908
|||||| || || ||||||||||||||||||| | |||||| |||||||||||||| |||
Sbjct 851 TGAGATCGACCGCGTCAGCATAAAGGCAATCATC-TTGGATATTTTTGTGGGTGGTACGG 909
Query 909 ACACATCGTTCACGCTTTTGGAATGGGCAATGACAGAGCTTCTACGTCATCCGA-AGTCT 967
||||||||| ||| ||| ||||||||| ||||||||||||| ||| ||| || | ||| |
Sbjct 910 ACACATCGTACACACTTATGGAATGGGTAATGACAGAGCTTTTACATCA-CCCAGAGTGT 968
Query 968 CTGAACAGACTCCAAGAAGAAGTCCGTACGATTTGTAAGGGGAAGTCAAGAGTATCTGAA 1027
||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| |||
Sbjct 969 CTGAAGAGACTTCAAGAAGAAGTCCGTACGATTTGTAAGGGCAAATCAAGTGTATCAGAA 1028
Query 1028 GATGACATTCAAGGA-ATGAAATACTTAAAAGCTGTGATCAAAGAGGCACTCAGGCTACA 1086
|| |||||| || || ||||| |||||||||||||||||||||||| || | ||||||||
Sbjct 1029 GAAGACATT-AAAGACATGAACTACTTAAAAGCTGTGATCAAAGAGACAATGAGGCTACA 1087
Query 1087 TCCTCCATTTCCAATGATGGCTCCTCATGAATCAACAGAAGATGTTAAATTAAGAGACTA 1146
||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1088 TCCTCCACTTCCATTGATGGTTCCTCATGAATCAACACAAGATGTTAAATTAAGAGACTA 1147
Query 1147 CCACATACCAGCCGGTACACAAGTGATGATGAATGCTTGGGCGATCGGGAGAGAGGTTGC 1206
||||||||||||||| ||| || ||||| ||||| ||||||||||||||||||| |||
Sbjct 1148 CCACATACCAGCCGGAACAGTGGTTATGATCAATGCATGGGCGATCGGGAGAGAGGCTGC 1207
Query 1207 CACATGGGGACCAGACGCGGAGGAGTTCAAACCGGAGAGGCATTT-AGATACGTCTGTTG 1265
||||||||||||||| |||||||||| | ||||||||| ||||| | || | |||||||
Sbjct 1208 GACATGGGGACCAGACCCGGAGGAGTTTAGACCGGAGAGACATTTCA-ATTCTTCTGTTG 1266
Query 1266 ATTTCCGAGGTCAAAACTTTGAGCTGCTTCCATTTGGAGCAGGGAGAAGGATTTGTCCAG 1325
||||||| ||||| | ||||||||| |||| ||||| ||||||||||| || || || |
Sbjct 1267 ATTTCCGGGGTCAGGATTTTGAGCTGATTCCGTTTGGGGCAGGGAGAAGAATATGCCCGG 1326
Query 1326 CAGTATCATTCGCTGTGGTATTGAATGAGGTGGTTTTGGCTAACTTAGTGCATGGGTTTG 1385
|| ||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||
Sbjct 1327 CAATATCATTTGCTGTGGTATTGAATGAAGAAGTTTTGGCTAACTTAGTGCATCGGTTTG 1386
Query 1386 ATTGGAAACTACCGGAGGAATCTAAAGAAGA-CAAA-AC-TGATGTCGCTGAATCCAGCG 1442
|||||| ||||||||| ||||||| ||||| |||| | || ||| |||||||| | ||
Sbjct 1387 ATTGGAGACTACCGGATGAATCTACGGAAGATCAAACAGGTGTTGTTGCTGAATCAACCG 1446
Query 1443 GTTTTTCGGTTCACCGCGA-GTTCCCTCTTTATGCCGTTGCATCACCT--TACTTGACTT 1499
| || | |||||||| | |||||||||||||||| |||||||| || |||||||||
Sbjct 1447 GAGTTGCCATTCACCGC-ATGTTCCCTCTTTATGCCATTGCATCATCTACTACTTGACTA 1505
Query 1500 AGGCATTTATATATAT 1515
|||| ||||||| |||
Sbjct 1506 AGGC-TTTATAT-TAT 1519
> Ahg485191 jgi|Araly1|485191|fgenesh2_kg.5__1183__AT3G48310.1
Length=1602
Score = 1177 bits (637), Expect = 0.0
Identities = 1229/1512 (81%), Gaps = 51/1512 (3%)
Strand=Plus/Plus
Query 28 aaT-GATGATGATGATAATTCT-CTTGTGGTCAATAAT-TTTCATGACCATTCTCTTCTT 84
||| |||||| |||||| |||| | | | | |||||| ||| || ||||| ||||| ||
Sbjct 94 AATCGATGATCATGATACTTCTGC-TAAGCTTAATAATCTTT-ATTACCATCCTCTTTTT 151
Query 85 aaaaaaaCAGTTGAGTGGGAAGAAAGGTAAGACACC-TCCGTCACCACCGGGACTTCCGT 143
||||||||| || ||||||||| | || ||||| | ||||||||||| || ||||||
Sbjct 152 CAAAAAACAGAAAAGAGGGAAGAAAAGCAACACACCAT-CGTCACCACCGAGATTTCCGT 210
Query 144 TGATCGGAAACCTTCATCAGCTCGGCCGCCACACTCACCGATCACTATGCGATCTCAGTC 203
||||||||||||||||||| || ||||||||| ||||||||||||||| | ||| || |
Sbjct 211 TGATCGGAAACCTTCATCAACTTGGCCGCCACCCTCACCGATCACTATTCTCTCTGAGCC 270
Query 204 GCCGTTACGGTCCTCTCATGCTCCTTCACTTAGGTCGTGTCCCCGTTCTTATAGTCTCTT 263
|||||||||||||||||||||||| ||||| || ||||| || |||||| |||||||||
Sbjct 271 ACCGTTACGGTCCTCTCATGCTCCTCCACTTTGGACGTGTACCTGTTCTTGTAGTCTCTT 330
Query 264 CCGCGGACATGGCTCAAGAAATCTTGAAGACGCACGACCAAGCTTTCGCAAACCGCCCAC 323
|||| |||||||||| ||| || ||||| ||||| |||| | ||| || | || ||||
Sbjct 331 CCGCAGACATGGCTCGAGATATTTTGAAAACGCATGACCGCGTTTTTGCTAGTCGTCCAC 390
Query 324 GGTCAAAACTCTCCCAGAAGCTTCTTTACAACAATCGTGATGTGGCCTCAGCTCCTTATG 383
||||||| ||| |||||||| |||| ||| ||||||||||||| |||||| ||||
Sbjct 391 AGTCAAAAATCTTTGAGAAGCTTTTTTATAACGCCCGTGATGTGGCCTTAGCTCCGTATG 450
Query 384 GAGAGTATTGGAGGCAAATGAAGTCCGTGTGCGTCATTCATCTCTTAAGCAACAAAATGG 443
|||| |||||||||||||||||| |||||||||| | || ||| | | |||||||||||
Sbjct 451 GAGAATATTGGAGGCAAATGAAGAGCGTGTGCGTCCTCCAGCTCCTCACCAACAAAATGG 510
Query 444 TAC-GATCTTTTCGAGATGTAAGAGAAGAAGAAATCACTTTGATGATGGCA-AAAATCCG 501
| | | || || ||| | || ||| ||||||| |||| | ||||||||| | || ||||
Sbjct 511 T-CAGGTCCTTCCGAAACGTGAGACAAGAAGAGATCAGTCTGATGATGG-AGAAGATCCA 568
Query 502 GAAATCGAGTTCTTTGCCGTTTAATGTAAGCAAGGTCTTGGAGTGTTTGACCAACGATGT 561
|||||| |||||||||| | | ||| ||||| || |||||| | |||| || ||||||||
Sbjct 569 GAAATCAAGTTCTTTGCGGGTGAATCTAAGCGAGCTCTTGGGGAGTTTAACTAACGATGT 628
Query 562 GATATGTAGAGTCGCTTTGGGACGGAAATATGGTGGTGAAACTGACTTTAAGAAGTTAAC 621
||||| ||| || ||||||||||||||||| | | || || || |||||| ||||||
Sbjct 629 GATATCTAGGGTTGCTTTGGGACGGAAATACAGCGTTGGTACGGATTTTAAGGAGTTAAT 688
Query 622 GGATAGACTAAGCGA-GCTATTGGG-AACGTTTAGTATAGGGAGTTTTGTACCGTGGCTC 679
||| || || | ||| |||| |||| | ||||||| | |||| || | ||||||||||
Sbjct 689 GGAAAGGCTCA-CGAGGCTACTGGGCGA-GTTTAGTGTGGGGACTTATATACCGTGGCTT 746
Query 680 GCGTGGGTTGATTGGATCCGCGGTTGGGATGCTCAGCTAGATAAGATGGGAAAGGATCTT 739
|| ||| |||| |||||| | |||| ||||| |||||| | |||| || || ||||||
Sbjct 747 GCATGGATTGACTGGATCAGTGGTTTGGATGGACAGCTAAAAAAGACAGGCAATGATCTT 806
Query 740 GATGACTTCTTTGAGAAAGTTGTGCAAGATCATGAAGATGGTGACCGCCGAGATGGGACT 799
||||| ||||| ||||||||||| |||||||||| |||||| || || || | |||||
Sbjct 807 GATGAATTCTTGGAGAAAGTTGTCCAAGATCATGTAGATGGCGA-CG--GACAAAGGACT 863
Query 800 GA-TTTGATTGATGCATTGCTCAG-GGTTAAAAGAGAAAAGAGTC-CCGGGTTTGAGATA 856
|| |||| | |||| |||||| | || | ||||| ||||| | |||||||| ||
Sbjct 864 GATTTTG-TGGATGTGTTGCTC-GCAATTCAGAGAGAGAAGAG-CGTTGGGTTTGAAATC 920
Query 857 GAGCGAG-TCAGCATAAAGGCAATC-ACGTTGGATGTTTTTGTGGGTGGTTCGGACACAT 914
|| || | | ||||||||||| ||| | ||||||||| |||| |||||| |||| ||||
Sbjct 921 GACCG-GTTAAGCATAAAGGCTATCGTC-TTGGATGTTGTTGTTGGTGGTACGGATACAT 978
Query 915 CGTTCACGCT-TT-TGGAATGGGCAATGACAGAGCTTCTACGTCATCCGA-AGTCTCTGA 971
|| | | ||| || |||| |||||||||||||||||||| | || || | ||| |||||
Sbjct 979 CG-T-ATGCTCTTATGGAGTGGGCAATGACAGAGCTTCTTCTTC-GCCCAGAGTGTCTGA 1035
Query 972 ACAGACTCCAAGAAGAAGTCCGTACGATTTGTAAGGGGAAGTCAAGAGTATCTGAAGATG 1031
|||||||||| |||||||||||||||||||||||||| || | || ||||| |||||||
Sbjct 1036 ACAGACTCCAGGAAGAAGTCCGTACGATTTGTAAGGGTAATTTGAGTGTATCAGAAGATG 1095
Query 1032 ACATTCAAGGA-ATGAAATACTTAAAAGCTGTGATCAAAGAGGCACTCAGGCTACATCCT 1090
||| |||| || ||||| ||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 1096 ACA-TCAAAGACATGAACTACTTAAAAGCTGTGATCAGAGAGACACTCAGGCTATATCCT 1154
Query 1091 CCATTTCCAATGATGGCTCCTCATGAATCAACAGAAGATGTTAAATTAAGAGACTACCAC 1150
||| ||||| |||||| |||||| ||||||||| ||||||| | |||| |||| ||||||
Sbjct 1155 CCACTTCCATTGATGGTTCCTCACGAATCAACACAAGATGTCAGATTAGGAGATTACCAC 1214
Query 1151 ATACCAGCCGGTACACAAGTGATGATGAATGCTTGGGCGATCGGGAGAGAGGTTGCCACA 1210
||||| | ||||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1215 ATACCTGTCGGTACACAGGTAATGATCAATGCTTGGGCGATCGGGAGAGAGGTTGCAACG 1274
Query 1211 TGGGGACCAGACGCGGAGGAGTTCAAACCGGAGAGGCATTTAGA-TACGTCTGT-TGATT 1268
||||||||||||||||||||||| | |||||||||||||||||| | ||||| | |||||
Sbjct 1275 TGGGGACCAGACGCGGAGGAGTTTAGACCGGAGAGGCATTTAGAGT-CGTCT-TCTGATT 1332
Query 1269 TCCGAGGTCAAAACTTTGAGCTGCTTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAG 1328
|||| ||||| | |||||| || |||| || ||||||||||||||||| ||||||| |
Sbjct 1333 TCCGGGGTCAGGATTTTGAGTTGATTCCGTTCGGAGCAGGGAGAAGGATGTGTCCAGGAA 1392
Query 1329 TATCATTCGCTGTGGTATTGAATGAGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATT 1388
||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1393 TATCATTTGCTGTGGTATTGAATGAGGTGGTTTTGGCTAACTTAGTGCATCGGTATGATT 1452
Query 1389 GGAAACTACCGGAGGAATC-TAAAGAAGA-CAAAACTGATGTCGCTGAATCCAGCGGTTT 1446
||| | |||| | || || || |||||| |||| | |||| |||||||| | |||| |
Sbjct 1453 GGAGATTACCAGTTGA-TCATACAGAAGATCAAACCA-ATGTTGCTGAATCAACCGGTAT 1510
Query 1447 TTCGGTTCACCGCG-AGTTCCCTCTTTATGCCGTTGCATCACCT--TACTTGACTT-AGG 1502
|| ||||||| | |||||||| || ||| |||||||| || ||||||| | |||
Sbjct 1511 GGCGATTCACCGTTTA-TTCCCTCTCTACGCCATTGCATCATCTACTACTTGA-TGGAGG 1568
Query 1503 CATTTATATATA 1514
|| | |||||||
Sbjct 1569 CAGT-ATATATA 1579
> Ahg485188 jgi|Araly1|485188|fgenesh2_kg.5__1180__AT3G48270.1
Length=1371
Score = 1098 bits (594), Expect = 0.0
Identities = 983/1169 (84%), Gaps = 33/1169 (3%)
Strand=Plus/Plus
Query 344 CTTCTTTACAACAATCGTGATGTGGCCTCAGCTCCTTATGGAGAGTATTGGAGGCAAATG 403
|||||||| | || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CTTCTTTATGATAAACATGATGTGGCCTCAGCTCCTTATGGAGAGTATTGGAGGCAAATG 279
Query 404 AAGTCCGTGTGCGTCATTCATCTCTTAAGCAACAAAATGGTACGATCTTTTCGAGATGTA 463
||| || |||||| | |||||||| ||||||||||||||||| || |||||||| ||
Sbjct 280 AAGAGTGTATGCGTCCTCCATCTCTTCAGCAACAAAATGGTACGGTCCTTTCGAGAAGTG 339
Query 464 AGAGAAGAAGAAATCACTTTGATGATGGCAAAA-ATCCGGAAATCGAGTTCTTTGCCGTT 522
||||||||||| |||| | ||||||||| |||| ||||||||||||| |||||||||| |
Sbjct 340 AGAGAAGAAGAGATCAGTGTGATGATGG-AAAATATCCGGAAATCGAATTCTTTGCCGGT 398
Query 523 TAATGTAAGCAAGGTCTTGGAGTGTTTGACCAACGATGTGATATGTAGAGTCGCTTTGGG 582
||| ||||||| |||||| | |||| || |||||||||||||||||||| ||||||||
Sbjct 399 AAATTTAAGCAAAATCTTGGTGAGTTTAACTAACGATGTGATATGTAGAGTTGCTTTGGG 458
Query 583 ACGGAAATATGGTGGTGAAACTG-ACTTTAAGAAGTTAACGGATAGACTAAGCGAGCTAT 641
||||||||| ||||||||| || | |||||| |||||| ||| || ||||| ||||||
Sbjct 459 ACGGAAATACGGTGGTGAAG-TGGATTTTAAGGAGTTAATGGAAAGGCTAAGTAAGCTAT 517
Query 642 TGGGAACGTTTAGTATAGGGAGTTTTGTACCGTGGCTCGCGTGGGTTGATTGGATCCGCG 701
|||| ||||||||| | ||||||| | |||||||||| || |||||||||||| || |||
Sbjct 518 TGGGGACGTTTAGTGTGGGGAGTTATATACCGTGGCTTGCCTGGGTTGATTGGGTCAGCG 577
Query 702 GTTGGGATGCTCAGCTAGATAAGATGGGAAAGGATCTTGATGACTTCTTTGAGAAAGTTG 761
||| ||||| ||||||||| |||| || ||| ||||||||| | |||||||||| |||||
Sbjct 578 GTTTGGATGGTCAGCTAGAAAAGACGGCAAACGATCTTGATAAGTTCTTTGAGAGAGTTG 637
Query 762 TGCAAGATCATGA-AGATGGTGACCGCCGAGATGGGACTGATTT-GATTGATGCATTGCT 819
|||||||||||| | |||| || | |||| |||||||||| | | |||| ||||||
Sbjct 638 TGCAAGATCATGTCA-ATGGCAACAG---AGATAGGACTGATTTTG-TGGATGTATTGCT 692
Query 820 CAGGGTTAAAAGAGAAAAGAGTCC-CGGGTTTGAGAT-AGAGCGAGTCAGCATAAAGGCA 877
| || | ||||| ||||| | ||||||||| || | | || ||||||||||||||
Sbjct 693 CTCCATTCAGAGAGAGAAGAG-CGTCGGGTTTGAAATCA-ACCGTGTCAGCATAAAGGCT 750
Query 878 ATCA-CGTTGGATGTTTTTGTGGGTGGTTCGGACACATCGT-TCACGCTTTTGGAATGGG 935
||| | ||||||||||||||||||||| |||||||||| | | || ||| |||||||||
Sbjct 751 ATCGTC-TTGGATGTTTTTGTGGGTGGTACGGACACATCATAT-ACACTTATGGAATGGG 808
Query 936 CAATGACAGAGCTTCTACGTCATCCGAAGTCTCTGAACAGACTCCAAGAAGAAGTCCGTA 995
||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 809 CAATGACAGAGCTTCTACGTCATCCAAAGTGTCTGAACATACTCCAAGAAGAAGTCCGTA 868
Query 996 CGATTTGTAAGGGGAAGTC-AAGAGTATCTGAAGATGACATTCAAGGA-ATGAAATACTT 1053
|||| ||||||| | | | ||| ||||| ||||||||||| ||| || ||||| |||||
Sbjct 869 CGATATGTAAGGACA-GACCAAGTGTATCAGAAGATGACAT-CAAAGACATGAACTACTT 926
Query 1054 AAAAGCTGTGATCAAAGAGGCACTCAGGCTACATCCTCCATTTCCAATGATGGCTCCTCA 1113
||||||||||||||| ||| ||||||||||||| ||||| ||||| |||||||||||||
Sbjct 927 AAAAGCTGTGATCAAGGAGACACTCAGGCTACACCCTCCCCTTCCATTGATGGCTCCTCA 986
Query 1114 TGAATCAACAGAAGATGTTAAATTAAGAGACTACCACATACCAGCCGGTACACAAGTGAT 1173
|||||||| ||||||| | ||||||||| ||||||||||| || |||||||| ||| |
Sbjct 987 CGAATCAACCCAAGATGTCAGATTAAGAGATTACCACATACCTGCTGGTACACAGGTGTT 1046
Query 1174 GATGAATGCTTGGGCGATCGGGAGAGAGGTTGCCACATGGGGACCAGACGCGGAGGAGTT 1233
||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 1047 GATCAATGCTTGGGCGATCGGGAGAGAGGCTGCGACATGGGGATCAGACGCGGAGGAGTT 1106
Query 1234 CAAACCGGAGAGGCATTTAGATACGTCTGTTGATTTCCGAGGTCAAAACTTT-GAGCTGC 1292
| ||| |||||||||||| || |||||||||||| ||| ||||| |||| ||||||
Sbjct 1107 TAGACCAGAGAGGCATTTATATTCGTCTGTTGATTACCGGGGTCAGG-CTTTTGAGCTGA 1165
Query 1293 TTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAGTATCATTCGCTGTGGTATTGAATG 1352
|||| ||||||||||| ||||| ||||| |||||| |||||||||| |||| |||| ||
Sbjct 1166 TTCCGTTTGGAGCAGGAAGAAGAATTTGCCCAGCAATATCATTCGCAGTGGCGTTGATTG 1225
Query 1353 AGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATTGGAAACTACCGGAGGAATCTAAAG 1412
|||||| ||||||||||||||||||| ||| |||||||| | |||| | ||||||| ||
Sbjct 1226 AGGTGGCTTTGGCTAACTTAGTGCATCGGTATGATTGGAGATTACCAGTTGAATCTACAG 1285
Query 1413 AAGA-CAAAACTGATGTCGCTGAATCCAGC-GGTTTTTCGGTTCACCGCGA-GTTCCCTC 1469
|||| || | | ||||| |||||||| | | ||| || || | |||||| | ||| || |
Sbjct 1286 AAGATCAGA-CGGATGTGGCTGAATCAA-CTGGTATTGCGATCCACCGC-ATGTTACCAC 1342
Query 1470 TTTATGCCGTTGCATCACCT--TACTTGA 1496
| || |||||||||||| || |||||||
Sbjct 1343 TCTACGCCGTTGCATCATCTACTACTTGA 1371
> Ahg897677 jgi|Araly1|897677|Al_scaffold_0005_1643
Length=1443
Score = 1048 bits (567), Expect = 0.0
Identities = 1069/1305 (82%), Gaps = 60/1305 (5%)
Strand=Plus/Plus
Query 121 TCCGTCACCACCGGGACTTCCGTTGATCGGAAACCTTCATCAGCTCGGCCGCCA-CACTC 179
||| || |||||| |||| ||||||||||||||||||||||||||||||| || | |||
Sbjct 81 TCCATCCCCACCGAGACTACCGTTGATCGGAAACCTTCATCAGCTCGGCCAACATC-CTC 139
Query 180 ACCGATCACTATGCGATCTCAGTCGCCGTTACGGTCCTCTCATGCTCCTTCACTTAGGTC 239
|||||||||||||| ||||||| | |||||||||||||||||||||||| ||||| ||
Sbjct 140 ACCGATCACTATGCTATCTCAGCCACCGTTACGGTCCTCTCATGCTCCTCCACTTCGGAA 199
Query 240 GTGTCCCCGTTCTTATAGTCTCTTCCGCGGACATGGC-TCAAGA-A-ATCTTGAAGACGC 296
||||||||||| || ||| |||| |||| || | || ||||| | || || |||||||
Sbjct 200 GTGTCCCCGTTATTGTAGCCTCTACCGCAGA-A--GCGGCAAGAGACATTTTAAAGACGC 256
Query 297 ACGACCAAGC--TTTCGCAAACCGCCCACGGTC-AAAACTCTCCCAGAAGCTTCTTTACA 353
| || ||| ||| |||| ||| |||||||| |||| ||| | | |||||||||||||
Sbjct 257 ATGA--TAGCGTTTTTGCAAGCCGTCCACGGTCGAAAA-TCTTCGAAAAGCTTCTTTACA 313
Query 354 ACAATCGTGATGTGGCCTCAGCTCCTTATGGAGAGTATTGGAGGCAAATGAAGTCCGTG- 412
||| ||| || ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 314 ACAGCCGTAATATGGCCTCAGCTCCTTATGGAGAGTATTGGAGACAAATGAAG--AGTGT 371
Query 413 T-GCGTCATTCATCTCTTAAGCAACAAAATGGTACGATCTTTTCGAGATGTAAGAGAAGA 471
| | || || |||||| | ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 372 TAGTGTTATCCATCTCCTCAGCAACAAAATGGTACGGTCTTTTCGAGAAGTGAGAGAAGA 431
Query 472 AGAAATCACTTTGATGATGGCAAAA-ATCCGGAAATCGAGTTCTTTGCCGTTTAATGTAA 530
||| |||||| ||||||||| |||| ||||| |||||||||||| ||| | ||| | |
Sbjct 432 AGAGATCACTCTGATGATGG-AAAAGATCCGAAAATCGAGTTCTAAACCGGTAAATCTTA 490
Query 531 GCAAGGTCTTG-GAGTGTTTGACCAACGATGTGATATGTAGAGTCGCTTTGGGACGGAAA 589
||||| ||||| | |||| || |||||||| |||||||||||||||||||||||||||
Sbjct 491 GCAAGATCTTGTCA-AGTTTAACTAACGATGTTATATGTAGAGTCGCTTTGGGACGGAAA 549
Query 590 TATGGTGGTGAAACTGACTTT-AAGAAGTTAACGGATAGACT-AAGCGAGCTA-TTGGGA 646
|| |||| || ||| || ||| ||| |||||| || ||||| | | | || | || ||
Sbjct 550 TACGGTGTTGGAACAGATTTTAAAG-AGTTAATAGACAGACTCATGAG-GCAACTT-GGT 606
Query 647 ACGTTTAGTATAGGGAGTTTTGTACCGTGGCTCGCGTGGGTTGATTGGATCCGCGGTTGG 706
||||||| ||| ||||||| |||||||||||| |||||| ||||||| || |||||| |
Sbjct 607 ACGTTTACTATCGGGAGTTATGTACCGTGGCTTGCGTGGACTGATTGGGTCAGCGGTTTG 666
Query 707 GATGCTCAG-CTAGATAAGATGGGAAAGGATCTTGATGA-CTTCTTTGAGA-AAGTTGTG 763
|| |||| | || || |||| | || ||| ||||| | | |||| |||| || |||||
Sbjct 667 GAGGCTC-GACTGGAAAAGACCGCTAATGATTTTGATAAGC-TCTTGGAGAGAA-TTGTG 723
Query 764 CAAGATCATGAAGATGGTGACCGCCGAGATGGGACTGA-TTTGATTGATGCATTGCTCAG 822
|| |||||||||||||| || || | | || |||||| |||| | |||| | | ||| |
Sbjct 724 CAGGATCATGAAGATGGAGA-CGGC-A-ATAAGACTGATTTTG-TCGATGTACTACTC-G 778
Query 823 -GGTTAAAAGAGAAAAGAGTCCCGGGTTTGAGATAGAGCGAG-TCAGCATAAAGGCAATC 880
| | | ||||| |||||| |||||| || || || || | | |||||||||||||||
Sbjct 779 CAGCTCAGAGAGAGAAGAGTGTCGGGTTGGATATCGACCG-GTTAAGCATAAAGGCAATC 837
Query 881 -ACGTTGGATGTTTTTGTGGGTGGTTCGGACACATCGTTCACGCTTTTGGAATGGGCAAT 939
| ||||||| ||||||||||||| | |||||||| | ||| ||| ||||||||| |||
Sbjct 838 GTC-TTGGATGCTTTTGTGGGTGGTACAGACACATCCTCCACACTTGTGGAATGGGAAAT 896
Query 940 GACAGAGCTTCTACGTCATCCGAA-GTCTCTGAACAGACTCCAAGAAGAAGTCCGTACGA 998
||||||||||||||| || || || || ||| || ||||| ||||||||||||||||| |
Sbjct 897 GACAGAGCTTCTACGACA-CCCAACGTGTCTAAAAAGACTTCAAGAAGAAGTCCGTACAA 955
Query 999 TTTGTAAG-GGGAAGTCAAGAGTATCTGAAGATGACATTCAAGGAATGAAATACTTAAAA 1057
||||| || || || ||||| ||||| |||||||||||| ||| ||||||||||||||||
Sbjct 956 TTTGT-AGTGGCAAATCAAGTGTATCAGAAGATGACATTAAAGAAATGAAATACTTAAAA 1014
Query 1058 GCTGTGATCAAAGAGGCACTCAGGCTACATCCTCCATTTCCAATGATGGCTCCTCATGAA 1117
|||||| ||||||||||||| ||||||||||||||| ||||| |||||| |||||| ||
Sbjct 1015 GCTGTGGTCAAAGAGGCACTAAGGCTACATCCTCCAGTTCCATTGATGGTTCCTCACCAA 1074
Query 1118 TCAACAGAAGATGTTAAATTAAGAGACT-ACCACATACCAGCCGGTACACAAGTGATGA- 1175
||| ||||||||| | |||||||| | |||| ||||| || ||||| || || || |
Sbjct 1075 TCATTAGAAGATGTCAGGTTAAGAGA-TAACCATATACCGGCGGGTACGCAGGTTAT-AG 1132
Query 1176 TGAATGC-TTGGGCGATCGGGAGAGAGGTTGCCACATGGGGACCAGACGCGGAGGAGTTC 1234
| ||| | ||||||| |||||||||||| ||| || ||||||||||||||| | |||||
Sbjct 1133 TCAAT-CTTTGGGCGGTCGGGAGAGAGGCTGCAACGTGGGGACCAGACGCGAATGAGTTT 1191
Query 1235 AAACCGGAGAGGCATTTAGA-TACGTCTGT-TGATTTCCGAGGTCAAAACTTTGAGCTGC 1292
| |||||||||||||||||| | ||||| | ||||||||| ||||| | ||||| |||
Sbjct 1192 AGACCGGAGAGGCATTTAGAGT-CGTCT-TCTGATTTCCGGGGTCAGGATTTTGATCTGA 1249
Query 1293 TTCCATTTGGAGCAGGGAGAAGGATTTGTCCAGCAGTATCATTCGCTGTGGTATTGAATG 1352
|||| || ||||||||||||||||| ||||||| | ||||||| |||||||| |||||||
Sbjct 1250 TTCCGTTCGGAGCAGGGAGAAGGATGTGTCCAGGAATATCATTTGCTGTGGTGTTGAATG 1309
Query 1353 AGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGATTGGAAA-CTA 1396
|||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 1310 AGGTGGTTTTGGCTAACTTAGTGCATGGGTTTGACTGGCAATCTA 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61820467635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5