BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48310.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485191 jgi|Araly1|485191|fgenesh2_kg.5__1183__AT3G48310.1 2198 0.0
Ahg937586 jgi|Araly1|937586|scaffold_501777.1 1548 0.0
Ahg485189 jgi|Araly1|485189|fgenesh2_kg.5__1181__AT3G48280.1 1343 0.0
Ahg485188 jgi|Araly1|485188|fgenesh2_kg.5__1180__AT3G48270.1 1260 0.0
> Ahg485191 jgi|Araly1|485191|fgenesh2_kg.5__1183__AT3G48310.1
Length=1602
Score = 2198 bits (1190), Expect = 0.0
Identities = 1460/1591 (92%), Gaps = 16/1591 (1%)
Strand=Plus/Plus
Query 3 GACTCAGATCATCTAAGTTCAAAAAGAAGACCAC-AAATTCTTAGAAACTCTTTACTAGA 61
|||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||| |||
Sbjct 1 GACTCATATCATCTAAGTTCAAAAAGAGGACCACAAAATTCTTAAAAACTCTTTACAAGA 60
Query 62 AAATCTTGACGAAACTTGAAGAATACAAGCATGGAATCAATGATCAGGATAATTCTGCTA 121
||||||||||| | |||||||||| ||| ||||||||| ||||||| |||| ||||||||
Sbjct 61 AAATCTTGACG-AGCTTGAAGAATCCAAACATGGAATCGATGATCATGATACTTCTGCTA 119
Query 122 AGCTTGATAATCTTCATTACCATCCTCTTTTTCATAAAACAGAAAAAAGGGAAGAAAAGC 181
||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 120 AGCTTAATAATCTTTATTACCATCCTCTTTTTCAAAAAACAGAAAAGAGGGAAGAAAAGC 179
Query 182 AACACACC-TGCGTCACCACCGAGACTTCCGTTGATAGGAAACCTTCATCAACTCGGTCG 240
|||||||| | |||||||||||||| |||||||||| ||||||||||||||||| || ||
Sbjct 180 AACACACCAT-CGTCACCACCGAGATTTCCGTTGATCGGAAACCTTCATCAACTTGGCCG 238
Query 241 CCACCCTCACCGATCACTATGCTCTCTCAGCAATCGTTACGGCCCTCTTATGCTCCTTCG 300
|||||||||||||||||||| |||||| ||| | |||||||| ||||| |||||||| |
Sbjct 239 CCACCCTCACCGATCACTATTCTCTCTGAGCCACCGTTACGGTCCTCTCATGCTCCTCCA 298
Query 301 TTTTGGCCTTGTCCCCGTTCTTGTAGTCTCTTCCGCAGATGTGGCTCGAGATATTTTGAA 360
||||| | ||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 CTTTGGACGTGTACCTGTTCTTGTAGTCTCTTCCGCAGACATGGCTCGAGATATTTTGAA 358
Query 361 GACGTATGACCGCGTTTTTGCAAGCCGGCCACGGTCAAAAATCTTTGAGAAAATATTTTA 420
||| |||||||||||||||| || || |||| |||||||||||||||||| | |||||
Sbjct 359 AACGCATGACCGCGTTTTTGCTAGTCGTCCACAGTCAAAAATCTTTGAGAAGCTTTTTTA 418
Query 421 TGAGGCCCGTGATGTGGCCTTAGCTCCTTATGGAGAGTATTGGAGGCAAATGAAGAGCGT 480
| | ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 419 TAACGCCCGTGATGTGGCCTTAGCTCCGTATGGAGAATATTGGAGGCAAATGAAGAGCGT 478
Query 481 GTGCGTCCTCCATCTCCTCACCAACAAAATGGTCAGATCCTTTCGAAACGTGAGACAAGA 540
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 479 GTGCGTCCTCCAGCTCCTCACCAACAAAATGGTCAGGTCCTTCCGAAACGTGAGACAAGA 538
Query 541 AGAGATCAGTCTGATGATGGAGAAGATCCAGAAATCAAGTTCTTTGCAAGTGAATCTAAG 600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 AGAGATCAGTCTGATGATGGAGAAGATCCAGAAATCAAGTTCTTTGCGGGTGAATCTAAG 598
Query 601 CGAGCTCTTGGGGAGTTTAACTAACGATGTGATATCTAGAGTTGCTTTGGGACGGAAATA 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 599 CGAGCTCTTGGGGAGTTTAACTAACGATGTGATATCTAGGGTTGCTTTGGGACGGAAATA 658
Query 661 TAGTGATGAAACGGATTTTAAGGAGTTAATGAAAAGGCTCACGAAGCTACTGGGCGAGTT 720
|| | || ||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 659 CAGCGTTGGTACGGATTTTAAGGAGTTAATGGAAAGGCTCACGAGGCTACTGGGCGAGTT 718
Query 721 TTGTGTGGGGACTTATGTACCATGGCTTGCATGGATTGATTGGATCAGCGGTTTGGATGG 780
| |||||||||||||| |||| ||||||||||||||||| |||||||| |||||||||||
Sbjct 719 TAGTGTGGGGACTTATATACCGTGGCTTGCATGGATTGACTGGATCAGTGGTTTGGATGG 778
Query 781 ACAACTAAAAAAGACAGGTAATGATCTTGATGAATTCTTGGAGAAAGTTGTCCAAGATCA 840
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACAGCTAAAAAAGACAGGCAATGATCTTGATGAATTCTTGGAGAAAGTTGTCCAAGATCA 838
Query 841 TGAAGATGGCGACGCACAAAGGACTGACTTTGTGGATGTATTGCTCAG-AATCCAGAGGG 899
|| ||||||||||| |||||||||||| ||||||||||| |||||| | ||| ||||| |
Sbjct 839 TGTAGATGGCGACGGACAAAGGACTGATTTTGTGGATGTGTTGCTC-GCAATTCAGAGAG 897
Query 900 AGAAGAGCGTCGGGTTTGAAATCGACCGGTTAAGCATAAAGGCAATCATCTTGGATGTTG 959
|||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 898 AGAAGAGCGTTGGGTTTGAAATCGACCGGTTAAGCATAAAGGCTATCGTCTTGGATGTTG 957
Query 960 TTGTGGGTGGTACGGATACATCGTACGCACTTATGGAGTGGGCAATGACAGAGCTTCTTC 1019
|||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 958 TTGTTGGTGGTACGGATACATCGTATGCTCTTATGGAGTGGGCAATGACAGAGCTTCTTC 1017
Query 1020 ATCGCCCAGAGTGTCTGAACAGACTCCAAGAAGAAGTCCGTACGATTTGTAAGGGAAATT 1079
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1018 TTCGCCCAGAGTGTCTGAACAGACTCCAGGAAGAAGTCCGTACGATTTGTAAGGGTAATT 1077
Query 1080 CGAGTGTATCAGAAGATGACATCAAAGACATGAACTACTTAAAAGCTGTGATCAAAGAGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 TGAGTGTATCAGAAGATGACATCAAAGACATGAACTACTTAAAAGCTGTGATCAGAGAGA 1137
Query 1140 CTA-TGAGGCTACATCCTCCACTTCCATTGATGGTTCCTCACGAATCAACACAAGATGTC 1198
| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 C-ACTCAGGCTATATCCTCCACTTCCATTGATGGTTCCTCACGAATCAACACAAGATGTC 1196
Query 1199 AGATTAGGAGATTACCACATACCTG-CGGGTACACAGGTAATGATCAATGCTTGGGCGAT 1257
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1197 AGATTAGGAGATTACCACATACCTGTCGG-TACACAGGTAATGATCAATGCTTGGGCGAT 1255
Query 1258 CGGGAGAGAGGCTGCGACGTGGGGACCAGACGCGGAGAAGTTTAGACCGGAGAGACATTT 1317
||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1256 CGGGAGAGAGGTTGCAACGTGGGGACCAGACGCGGAGGAGTTTAGACCGGAGAGGCATTT 1315
Query 1318 AAATTCGTCTGTC-GATTTCCGAGGTCACAATTTTGAGCTT-ATTCCATTTGGAGCAGGG 1375
| | |||||| || |||||||| ||||| |||||||| || ||||| || |||||||||
Sbjct 1316 AGAGTCGTCT-TCTGATTTCCGGGGTCAGGATTTTGAG-TTGATTCCGTTCGGAGCAGGG 1373
Query 1376 AGAAGGATTTGTCCAGCAATATCATTCGCTGTGATCTTGATTGAGGTGACTTTGGCTAAC 1435
|||||||| ||||||| ||||||||| |||||| | |||| ||||||| ||||||||||
Sbjct 1374 AGAAGGATGTGTCCAGGAATATCATTTGCTGTGGTATTGAATGAGGTGGTTTTGGCTAAC 1433
Query 1436 TTAGTGCATCGGTATGATTGGAGATTACCGGAGGAAT-ATATAGAAGATCAAACCAATGT 1494
||||||||||||||||||||||||||||| | || | ||| ||||||||||||||||||
Sbjct 1434 TTAGTGCATCGGTATGATTGGAGATTACCAGTTGA-TCATACAGAAGATCAAACCAATGT 1492
Query 1495 CGCTGAATCAACCGGTATGGTGATTCACCGTTTATTCCCTCTTTACGCCATTGTATCATC 1554
||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 1493 TGCTGAATCAACCGGTATGGCGATTCACCGTTTATTCCCTCTCTACGCCATTGCATCATC 1552
Query 1555 TACTACTTGATGGATGCATTATACATAAATG 1585
|||||||||||||| ||| |||| |||||||
Sbjct 1553 TACTACTTGATGGAGGCAGTATATATAAATG 1583
> Ahg937586 jgi|Araly1|937586|scaffold_501777.1
Length=1522
Score = 1548 bits (838), Expect = 0.0
Identities = 1303/1521 (86%), Gaps = 57/1521 (4%)
Strand=Plus/Plus
Query 74 AACTTGAAGAATAC-AAGCATGG-AATCAATGATCAGGATAATTCTGC-TAAGCTTGATA 130
|||||||||||| | || ||||| ||| ||| ||| |||| |||| | | ||| |||
Sbjct 9 AACTTGAAGAAT-CAAAACATGGAAAT-GATGTTCATGATACTTCT-CATGTGCTCAATA 65
Query 131 ATCTTCATTACCATC-CTCTT-TTTCATAAAACAGAAA--AAAGGGAAGAAAAGCAACAC 186
||||| ||||||| | ||||| ||| ||||| || ||| || ||||||||||||||||
Sbjct 66 ATCTTTATTACCA-CTCTCTTCTTT-ATAAACCA-AAATTCAA-GGAAGAAAAGCAACAC 121
Query 187 ACCTGCGTCACCACCGAGACTTCCGTTGATAGGAAACCTTCATCAACTCGGTCGCCACCC 246
|||| ||||||||||||||||||| ||||||||||||||||| || ||||| || |||||
Sbjct 122 ACCTCCGTCACCACCGAGACTTCCTTTGATAGGAAACCTTCACCAGCTCGGCCGTCACCC 181
Query 247 TCACCGATCACTATGCTCTCTCAGCAATCGTTACGGCCCTCTTATGCTCCTTCGTTTTGG 306
||||||||||||||||||||||||| | ||||| || |||||||||||||| | || ||
Sbjct 182 TCACCGATCACTATGCTCTCTCAGCCACCGTTATGGTCCTCTTATGCTCCTCCACTTGGG 241
Query 307 CCTTGTCCCCGTTCTTGTAGTCTCTTCCGCAGATGTGGCTCGAGATATTTTGAAGACGTA 366
|| |||||| |||||||||||||||||||| || ||||||||||| ||||||||||| |
Sbjct 242 CCGTGTCCCGGTTCTTGTAGTCTCTTCCGCTGACGTGGCTCGAGACGTTTTGAAGACGCA 301
Query 367 TGACCGCGTTTTTGCAAGCCGGCCACGGTC-AAAAATCTTTGAGAAAATAT-TTTATGA- 423
||| || |||||||| ||||| ||| |||| |||||| ||||| | | |||| ||
Sbjct 302 TGATCGAGTTTTTGCTAGCCGTCCATGGTCTAAAAAT-ACCGAGAAGCT-TCTTTACGAC 359
Query 424 GGCCCGTGATGTGGCCTTAGCTCCTTATGGAGAGTATTGGAGGCAAATGAAGAGCGTGTG 483
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 360 GG-GCGTGATGTGGCCTTAGCTCCTTATGGAGAGTACTGGAGGCAAATGAAGAGTGTGTG 418
Query 484 CGTCCTCCA-TCTCCTCACCAACAAAATGGTCA-GATCCTTTCGAAACGTGAGACAAGAA 541
|||||| || | | |||| |||||||||||| | ||||||||||| | ||||||||| ||
Sbjct 419 CGTCCT-CAGTTTGCTCAGCAACAAAATGGT-ACGATCCTTTCGAGATGTGAGACAACAA 476
Query 542 GAGATCAGTCTGATGATGGAGAAGATCCAGAAATCAAGTTCTTTGCAAGTGAATCTAAGC 601
||||||||||| ||||||||||||||| | |||| ||||||||||| ||||||||||||
Sbjct 477 GAGATCAGTCTTATGATGGAGAAGATCGGGCAATCGAGTTCTTTGCAGGTGAATCTAAGC 536
Query 602 GAGCTCTTGGGGAGTTTAACTAACGATGTGATATCTA-GAGTTGCTTTGGGACGGAAATA 660
||| |||||| ||||||||| || |||||||||| || || |||||||||||||||||||
Sbjct 537 GAGATCTTGGCGAGTTTAACGAATGATGTGATATGTAGGA-TTGCTTTGGGACGGAAATA 595
Query 661 TAGTGATGAAACGGATTTTAAGGAGTTAATGAAAAGGCTCACGAA-GCTACT--GGGCGA 717
| | | |||||| |||||||||||||||||||| ||||| || || ||| | |||||
Sbjct 596 TGGCGGTGAAACAGATTTTAAGGAGTTAATGAAGAGGCTTAC-AAGGCTTTTAGGGGCG- 653
Query 718 GTTTTGTGTGGGGACTTATGTACCATGGCTTGCATGGATTGATTGGATCAGCGGTTTGGA 777
| || ||||||| | | ||||||||||||||||||||||||||||| || ||||||||||
Sbjct 654 G-TTAGTGTGGGAAATCATGTACCATGGCTTGCATGGATTGATTGGCTCTGCGGTTTGGA 712
Query 778 TGGACAACTAAAAAAGACAG-GTAATGATCTTGATGA-ATTCTTGGAGAAAGTTGTCCAA 835
||| || ||| ||||||| | | |||||||||||||| ||||| |||| |||||| |||
Sbjct 713 TGGTCAGCTAGAAAAGAC-GAGAAATGATCTTGATGAGTTTCTT-GAGAGAGTTGTGCAA 770
Query 836 GATCATGAAGATGGCGACGCACAAAGGACTGACTTT-GTGGATGTATTGCTCAG-AATCC 893
||||||| ||||| | ||| | | |||||||| ||| || |||||||||||| | || |
Sbjct 771 GATCATGTAGATGTCAACGGAGATAGGACTGA-TTTCGTCGATGTATTGCTC-GCCATTC 828
Query 894 AGAGGGAGAAGAGCGTCGGGTTTGAAATCGACCG-GTTAAGCATAAAGGCAATCATCTTG 952
|||| |||||||| || |||||||| |||||||| | | |||||||||||||||||||||
Sbjct 829 AGAGAGAGAAGAGTGTGGGGTTTGAGATCGACCGCG-TCAGCATAAAGGCAATCATCTTG 887
Query 953 GATGTTGTTGTGGGTGGTACGGATACATCGTACGCACTTATGGAGTGGGCAATGACAGAG 1012
||| || |||||||||||||||| ||||||||| |||||||||| |||| ||||||||||
Sbjct 888 GATATTTTTGTGGGTGGTACGGACACATCGTACACACTTATGGAATGGGTAATGACAGAG 947
Query 1013 CTTCTT-CATCGCCCAGAGTGTCTGAACAGACTCCAAGAAGAAGTCCGTACGATTTGTAA 1071
||| || |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 948 CTT-TTACATCACCCAGAGTGTCTGAAGAGACTTCAAGAAGAAGTCCGTACGATTTGTAA 1006
Query 1072 GGG-AAATTCGAGTGTATCAGAAGATGACATCAAAGACATGAACTACTTAAAAGCTGTGA 1130
||| ||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1007 GGGCAAA-TCAAGTGTATCAGAAGAAGACATTAAAGACATGAACTACTTAAAAGCTGTGA 1065
Query 1131 TCAAAGAGACTATGAGGCTACATCCTCCACTTCCATTGATGGTTCCTCACGAATCAACAC 1190
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1066 TCAAAGAGACAATGAGGCTACATCCTCCACTTCCATTGATGGTTCCTCATGAATCAACAC 1125
Query 1191 AAGATGTCAGATTAGGAGATTACCACATACCTGCGGGTACACAGGTAATGATCAATGCTT 1250
||||||| | |||| |||| ||||||||||| || || ||| ||| ||||||||||| |
Sbjct 1126 AAGATGTTAAATTAAGAGACTACCACATACCAGCCGGAACAGTGGTTATGATCAATGCAT 1185
Query 1251 GGGCGATCGGGAGAGAGGCTGCGACGTGGGGACCAGACGCGGAGAAGTTTAGACCGGAGA 1310
||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||
Sbjct 1186 GGGCGATCGGGAGAGAGGCTGCGACATGGGGACCAGACCCGGAGGAGTTTAGACCGGAGA 1245
Query 1311 GACATTTAAATTCGTCTGTCGATTTCCGAGGTCACAATTTTGAGCTTATTCCATTTGGAG 1370
||||||| ||||| ||||| |||||||| ||||| |||||||||| ||||| ||||| |
Sbjct 1246 GACATTTCAATTCTTCTGTTGATTTCCGGGGTCAGGATTTTGAGCTGATTCCGTTTGGGG 1305
Query 1371 CAGGGAGAAGGATTTGTCCAGCAATATCATTCGCTGTGATCTTGATTGAGGTGACTTT-G 1429
|||||||||| || || || ||||||||||| |||||| | |||| ||| | | ||| |
Sbjct 1306 CAGGGAGAAGAATATGCCCGGCAATATCATTTGCTGTGGTATTGAATGAAGA-AGTTTTG 1364
Query 1430 GCTAACTTAGTGCATCGGTATGATTGGAGATTACCGGAGGAATATATAGAAGATCAAACC 1489
||||||||||||||||||| |||||||||| ||||||| |||| || |||||||||||
Sbjct 1365 GCTAACTTAGTGCATCGGTTTGATTGGAGACTACCGGATGAATCTACGGAAGATCAAAC- 1423
Query 1490 AA-TGTCG---CTGAATCAACCGGTATGGTG--ATTCACCGTTTATTCCCTCTTTACGCC 1543
| ||| | ||||||||||||| | | || |||||||| | ||||||||||| |||
Sbjct 1424 AGGTGTTGTTGCTGAATCAACCGG-A-GTTGCCATTCACCGCATGTTCCCTCTTTATGCC 1481
Query 1544 ATTGTATCATCTACTACTTGA 1564
|||| ||||||||||||||||
Sbjct 1482 ATTGCATCATCTACTACTTGA 1502
> Ahg485189 jgi|Araly1|485189|fgenesh2_kg.5__1181__AT3G48280.1
Length=1617
Score = 1343 bits (727), Expect = 0.0
Identities = 1251/1501 (83%), Gaps = 48/1501 (3%)
Strand=Plus/Plus
Query 128 ATAATCTTCATTACCATCCTCTTTTTCATAAAACAGAAAAAAGGGAAGAAAAGCAACACA 187
||||| ||||| ||||| ||||| || | |||| || | ||||||||| | || |||
Sbjct 37 ATAATTTTCATGACCATTCTCTTCTTAAAAAAAAAGTTGAGTGGGAAGAAAGGTAAGACA 96
Query 188 CCTGCGTCACCACCGAGACTTCCGTTGATAGGAAACCTTCATCAACTCGGTCGCCACCCT 247
||| ||||||||||| ||||||||||||| |||||||||||||| ||||| || ||| ||
Sbjct 97 CCTCCGTCACCACCGGGACTTCCGTTGATCGGAAACCTTCATCAGCTCGGCCGTCACACT 156
Query 248 CACCGATCACTATGCTCTCTCAG-CAATCGTTACGGCCCTCTTATGCTCCTTCGTTTTGG 306
||||||||||||||||||||||| | |||||||| |||||||||||||||| || ||
Sbjct 157 CACCGATCACTATGCTCTCTCAGTC-GCCGTTACGGTCCTCTTATGCTCCTTCACTTAGG 215
Query 307 CCTTGTCCCCGTTCTTGTAGTCTCTTCCGCAGATGTGGCTCGAGATATTTTGAAGACGTA 366
|| ||||||||||||| ||||||||||||| || |||||| ||| || ||||||||| |
Sbjct 216 CCGTGTCCCCGTTCTTATAGTCTCTTCCGCGGACATGGCTCAAGAAATCTTGAAGACGCA 275
Query 367 TGACCGCGTTTTTGCAAGCCGGCCACGGTCAAAAATCTTTGAGAAAATAT-TTTATGAGG 425
|||| | ||| |||| ||| |||||||||||| ||| |||| | | |||| |
Sbjct 276 CGACCAAGCTTTCGCAAACCGCCCACGGTCAAAACTCTCCCAGAAGCT-TCTTTACAACA 334
Query 426 CCCGTGATGTGGCCTTAGCTCCTTATGGAGAGTATTGGAGGCAAATGAAGAGC-GTGTGC 484
|| |||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 335 ATCGCGATGTGGCCTCAGCTCCTTATGGAGAGTATTGGAGGCAAATGAAG-GCTGTGTGC 393
Query 485 GTCC-TCCATCTCCTCACCAACAAAATGGTCA-GATCCTTTCGAAACGTGAGACAAGAAG 542
|| | |||||| | | |||||||||||| | |||| |||||| | || ||| ||||||
Sbjct 394 -ACCATTCATCTCTTAAGCAACAAAATGGT-ACGATCTTTTCGAGATGTAAGAGAAGAAG 451
Query 543 AGATCAGTCTGATGATGGAGAAGATCCAGAAATCAAGTTCTTTGCAAG-TGAATCTAAGC 601
| |||| | ||||||||||||| |||| |||||| |||||||||| | | ||| |||||
Sbjct 452 AAATCACTTTGATGATGGAGAAAATCCGGAAATCGAGTTCTTTGC-CGTTTAATGTAAGC 510
Query 602 GAGCTCTTGGGGAGTTTAACTAACGATGTGATATCTAGAGTTGCTTTGGGACGGAAATAT 661
|| |||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 511 AAGGTCTTGGAGAGTTTAACTAACGATGTGATATGTAGAGTGGCTTTAGGACGGAAATAT 570
Query 662 AGTGATGAAACGGATTTTAAGGAGTTAATGAAAAGGCTCA-CGAAGCTACTGGGCGA-GT 719
||| |||||| || |||||| |||||| | | || || | || ||||| |||| | |
Sbjct 571 GGTGGTGAAACTGACTTTAAGAAGTTAACGGATAGACTAAGCG-AGCTATTGGG-AACAT 628
Query 720 TTTGTGTGGGGACTTATGTACCATGGCTTGCATGGATTGATTGGATCAGCGGTTTGGATG 779
|| || | |||| || |||||| |||||||| ||||||||||||||| |||||| |||||
Sbjct 629 TTAGTATAGGGAGTTTTGTACCGTGGCTTGCGTGGATTGATTGGATCCGCGGTTGGGATG 688
Query 780 GACAACTAAAAAAGACAGGTAATGATCTTGATGAATTCTTGGAGAAAGTTGTCCAAGATC 839
|| ||| | |||| || || ||||||||||| ||||| ||||||||||| |||||||
Sbjct 689 CTCAGCTAGATAAGATGGGAAAGGATCTTGATGACTTCTTTGAGAAAGTTGTGCAAGATC 748
Query 840 ATGAAGATGGCGACGCA-C-A-A-AGGACTGACTTTG-TGGATGTATTGCTCAGAA-TCC 893
|||||||||||||| | | | | ||| |||| ||| | |||| |||||||| || |
Sbjct 749 ATGAAGATGGCGAC-AACCGAGATAGGTTTGAC-TTGATCGATGCATTGCTCA-AAGTTA 805
Query 894 AGAGGGAGAAGAG-CGTCGGGTTTGAAATCGACCG-GTTAAGCATAAAGGCAATCATC-T 950
| || |||||||| | ||||||||| || || || | | |||||||||||||||| | |
Sbjct 806 AAAGAGAGAAGAGTC-CCGGGTTTGAGATAGAGCGAG-TCAGCATAAAGGCAATCA-CGT 862
Query 951 TGGATGTTGTTGTGGGTGGTACGGATACATCGTACGCACTTATGGAGTGGGCAATGACAG 1010
|||||||| ||||||||||| | || ||||||| | | ||| |||| |||||||||||||
Sbjct 863 TGGATGTTTTTGTGGGTGGTTCCGACACATCGTTCACGCTTTTGGAATGGGCAATGACAG 922
Query 1011 AGCTTCTTCATCGCCCAGAGTGTCTGAACAGACTCCAAGAAGAAGTCCGTACGATTTGTA 1070
||||||| | || ||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 923 AGCTTCTACGTCACCCAGAGAGTCTGAAAAGACTCCAAGAAGAAGTGCGTACGATTTGTA 982
Query 1071 AGGG-AAATTCGAGTGTATCAGAAGATGACATCAAAGACATGAACTACTTAAAAGCTGTG 1129
|||| ||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 983 AGGGCAAA-TCAAGTGTATCAGAAGATGACATTAAAGAAATGAAATACTTAAAAGCTGTC 1041
Query 1130 ATCAAAGAGACTA-TGAGGCTACATCCTCCACTTCCATTGATGGTTCCTCACGAATCAAC 1188
||||||||| | | | ||||||||||||||| ||||| |||||| |||||| ||||||||
Sbjct 1042 ATCAAAGAGGC-ACTCAGGCTACATCCTCCATTTCCAATGATGGCTCCTCATGAATCAAC 1100
Query 1189 ACAAGATGTCAGATTAGGAGATTACCACATACCTGCGGGTACACAGGTAATGATCAATGC 1248
| ||||||||| |||| |||| |||||||||||||| |||||||| || ||||| |||||
Sbjct 1101 AGAAGATGTCAAATTAAGAGACTACCACATACCTGCCGGTACACAAGTGATGATGAATGC 1160
Query 1249 TTGGGCGATCGGGAGAGAGGCTGCGACGTGGGGACCAGACGCGGAGAAGTTTAGACCGGA 1308
|||||| ||||||||||||| |||||| |||||||||||||||||| |||||| ||||||
Sbjct 1161 TTGGGCCATCGGGAGAGAGGTTGCGACATGGGGACCAGACGCGGAGGAGTTTAAACCGGA 1220
Query 1309 GAGACATTTAAATTCGTCTGTCGATTTCCGAGGTCACAATTTTGAGCTTATTCCATTTGG 1368
| | |||||| || ||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1221 GCGGCATTTAGATACGTCTGTTGATTTCCGAGGTCACAATTTTGAGCTGATTCCATTTGG 1280
Query 1369 AGCAGGGAGAAGGATTTGTCCAGCAATATCATTCGCTGTGATCTTGATTGAGGTGACTTT 1428
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 1281 AGCAGGGAGAAGGATTTGTCCAGCAATATCATTCGCAGTGGTCTTGATTGAGGTGGTTTT 1340
Query 1429 GGCTAACTTAGTGCATCGGTATGATTGGAGATTACCGGAGGAATATATAGAAGATCAAA- 1487
|||||||||||||||| ||| |||||||| |||||||||||||| || |||||| ||||
Sbjct 1341 GGCTAACTTAGTGCATGGGTTTGATTGGAAATTACCGGAGGAATCTAAAGAAGA-CAAAA 1399
Query 1488 CCAATGTCGCTGAATCAACCGGTATGGT-GATTCACCGTTTA-TTCCCTCTTTACGCCAT 1545
|| ||||||||||||| | |||| | | | ||||||| | ||||||||||| |||||
Sbjct 1400 CCGATGTCGCTGAATCCAGCGGTTTT-TCGGTTCACCGCG-AGTTCCCTCTTTATGCCAT 1457
Query 1546 TGTATCATCTACTACTTGATGGATGCATT-ATACATA--AATGCTTACTATTATGTTATG 1602
|| |||| || ||||||| | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 1458 TGCATCACCT--TACTTGACCTAGGCATTTATATATATTAATGCTT--TGTTATGTTATG 1513
Query 1603 T 1603
|
Sbjct 1514 T 1514
> Ahg485188 jgi|Araly1|485188|fgenesh2_kg.5__1180__AT3G48270.1
Length=1371
Score = 1260 bits (682), Expect = 0.0
Identities = 998/1149 (87%), Gaps = 28/1149 (2%)
Strand=Plus/Plus
Query 430 TGATGTGGCCTTAGCTCCTTATGGAGAGTATTGGAGGCAAATGAAGAGCGTGTGCGTCCT 489
||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 237 TGATGTGGCCTCAGCTCCTTATGGAGAGTATTGGAGGCAAATGAAGAGTGTATGCGTCCT 296
Query 490 CCATCTCCTCACCAACAAAATGGTCA-GATCCTTTCGA-AACGTGAGACAAGAAGAGATC 547
||||||| ||| |||||||||||| | | ||||||||| || |||||| |||||||||||
Sbjct 297 CCATCTCTTCAGCAACAAAATGGT-ACGGTCCTTTCGAGAA-GTGAGAGAAGAAGAGATC 354
Query 548 AGTCTGATGATGGAGAAGATCCAGAAATC-AAGTTCTTTGCAAGTGAATCTAAGCGAGCT 606
||| |||||||||| || |||| |||||| || |||||||| || ||| ||||| | |
Sbjct 355 AGTGTGATGATGGAAAATATCCGGAAATCGAA-TTCTTTGCCGGTAAATTTAAGCAAAAT 413
Query 607 CTTGGGGAGTTTAACTAACGATGTGATATCTAGAGTTGCTTTGGGACGGAAATATAGTGA 666
||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 414 CTTGGTGAGTTTAACTAACGATGTGATATGTAGAGTTGCTTTGGGACGGAAATACGGTGG 473
Query 667 TGAAACGGATTTTAAGGAGTTAATGAAAAGGCTCACG-AAGCTACTGGGCGA-GTTTTGT 724
|||| ||||||||||||||||||| ||||||| | | |||||| |||| || |||| ||
Sbjct 474 TGAAGTGGATTTTAAGGAGTTAATGGAAAGGCT-AAGTAAGCTATTGGG-GACGTTTAGT 531
Query 725 GTGGGGACTTATGTACCATGGCTTGCATGGATTGATTGGATCAGCGGTTTGGATGGACAA 784
||||||| |||| |||| |||||||| ||| |||||||| |||||||||||||||| ||
Sbjct 532 GTGGGGAGTTATATACCGTGGCTTGCCTGGGTTGATTGGGTCAGCGGTTTGGATGGTCAG 591
Query 785 CTAAAAAAGACAGG-TAATGATCTTGATGAA-TTCTTGGAGAAAGTTGTCCAAGATCATG 842
||| ||||||| || || ||||||||| || ||||| |||| |||||| ||||||||||
Sbjct 592 CTAGAAAAGAC-GGCAAACGATCTTGAT-AAGTTCTTTGAGAGAGTTGTGCAAGATCATG 649
Query 843 -AAGATGGCGAC-GCACAAAGGACTGACTTTGTGGATGTATTGCTCAGAATCCAGAGGGA 900
| ||||| || | | | |||||||| |||||||||||||||||| || ||||| ||
Sbjct 650 TCA-ATGGCAACAG-AGATAGGACTGATTTTGTGGATGTATTGCTCTCCATTCAGAGAGA 707
Query 901 GAAGAGCGTCGGGTTTGAAATCGACCGGT-TAAGCATAAAGGCAATCATCTTGGATGTTG 959
|||||||||||||||||||||| ||| || | ||||||||||| ||| |||||||||||
Sbjct 708 GAAGAGCGTCGGGTTTGAAATCAACC-GTGTCAGCATAAAGGCTATCGTCTTGGATGTTT 766
Query 960 TTGTGGGTGGTACGGATACATCGTACGCACTTATGGAGTGGGCAATGACAGAGCTTCTTC 1019
|||||||||||||||| ||||| || |||||||||| |||||||||||||||||||| |
Sbjct 767 TTGTGGGTGGTACGGACACATCATATACACTTATGGAATGGGCAATGACAGAGCTTCTAC 826
Query 1020 ATCGCCCAGAGTGTCTGAACAGACTCCAAGAAGAAGTCCGTACGATTTGTAAGGGA-A-A 1077
|| ||| |||||||||||| |||||||||||||||||||||||| ||||| ||| | |
Sbjct 827 GTCATCCAAAGTGTCTGAACATACTCCAAGAAGAAGTCCGTACGATATGTAA-GGACAGA 885
Query 1078 TTCGAGTGTATCAGAAGATGACATCAAAGACATGAACTACTTAAAAGCTGTGATCAAAGA 1137
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 886 -CCAAGTGTATCAGAAGATGACATCAAAGACATGAACTACTTAAAAGCTGTGATCAAGGA 944
Query 1138 GACTA-TGAGGCTACATCCTCCACTTCCATTGATGGTTCCTCACGAATCAACACAAGATG 1196
||| | | |||||||| ||||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 945 GAC-ACTCAGGCTACACCCTCCCCTTCCATTGATGGCTCCTCACGAATCAACCCAAGATG 1003
Query 1197 TCAGATTAGGAGATTACCACATACCTGCGGGTACACAGGTAATGATCAATGCTTGGGCGA 1256
|||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1004 TCAGATTAAGAGATTACCACATACCTGCTGGTACACAGGTGTTGATCAATGCTTGGGCGA 1063
Query 1257 TCGGGAGAGAGGCTGCGACGTGGGGACCAGACGCGGAGAAGTTTAGACCGGAGAGACATT 1316
||||||||||||||||||| |||||| ||||||||||| |||||||||| ||||| ||||
Sbjct 1064 TCGGGAGAGAGGCTGCGACATGGGGATCAGACGCGGAGGAGTTTAGACCAGAGAGGCATT 1123
Query 1317 TAAATTCGTCTGTCGATTTCCGAGGTCACAATTTTGAGCTTATTCCATTTGGAGCAGGGA 1376
|| |||||||||| |||| ||| ||||| ||||||||| ||||| ||||||||||| |
Sbjct 1124 TATATTCGTCTGTTGATTACCGGGGTCAGGCTTTTGAGCTGATTCCGTTTGGAGCAGGAA 1183
Query 1377 GAAGGATTTGTCCAGCAATATCATTCGCTGTGATC-TTGATTGAGGTGACTTTGGCTAAC 1435
|||| ||||| ||||||||||||||||| ||| | |||||||||||| |||||||||||
Sbjct 1184 GAAGAATTTGCCCAGCAATATCATTCGCAGTGG-CGTTGATTGAGGTGGCTTTGGCTAAC 1242
Query 1436 TTAGTGCATCGGTATGATTGGAGATTACCGGAGGAATATATAGAAGATCAAACCAATGTC 1495
||||||||||||||||||||||||||||| | |||| || ||||||||| || ||||
Sbjct 1243 TTAGTGCATCGGTATGATTGGAGATTACCAGTTGAATCTACAGAAGATCAGACGGATGTG 1302
Query 1496 GCTGAATCAACCGGTATGGTGATTCACCGTTTATTCCCTCTTTACGCCATTGTATCATCT 1555
||||||||||| ||||| | ||| ||||| | || || || |||||| ||| |||||||
Sbjct 1303 GCTGAATCAACTGGTATTGCGATCCACCGCATGTTACCACTCTACGCCGTTGCATCATCT 1362
Query 1556 ACTACTTGA 1564
|||||||||
Sbjct 1363 ACTACTTGA 1371
Score = 222 bits (120), Expect = 6e-57
Identities = 190/224 (85%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 101 ATGATCAGGATAATTCTGCTAAGCTTGA-TAATCTTCATTACCATCCTCTTTTTCATAAA 159
||||||| ||| |||||||| |||| | |||||||| |||||||| | | ||||| |||
Sbjct 4 ATGATCATGATCTTTCTGCTATGCTT-ATTAATCTTCGTTACCATCATATCTTTCAAAAA 62
Query 160 ACAGAAAAAAGGGAAGAAAAGCAACACACCTGCGTCACCACCGAGACTTCCGTTGATAGG 219
|||||| | ||||||||||| |||||||| | ||||||||||| |||| ||||| || ||
Sbjct 63 ACAGAAGAGAGGGAAGAAAATCAACACACTTCCGTCACCACCGGGACTACCGTTAATCGG 122
Query 220 AAACCTTCATCAACTCGGTCGCCACCCTCACCGATCACTATGCTCTCTCAGCAATCGTTA 279
|||||||||||| ||||| | ||||||||||||||||||||||||||||||| | || ||
Sbjct 123 AAACCTTCATCAGCTCGGCCACCACCCTCACCGATCACTATGCTCTCTCAGCCACCGCTA 182
Query 280 CGGCCCTCTTATGCTCCTTCGTTTTGGCCTTGTCCC-CGTTCTT 322
|| ||||| |||||||||| ||||||| |||||| | |||||
Sbjct 183 TGGTCCTCTCATGCTCCTTCACTTTGGCCGTGTCCCTC-TTCTT 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5