BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48330.1
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937589 jgi|Araly1|937589|scaffold_501780.1 1140 0.0
> Ahg937589 jgi|Araly1|937589|scaffold_501780.1
Length=733
Score = 1140 bits (617), Expect = 0.0
Identities = 682/714 (96%), Gaps = 2/714 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCAATTCTGGAGTCCAAGTAGTATCAACAAGAACAAAGCTATGGTTGAGAATCTG 60
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 21 ATGAAGCAATTCTGGAGTCCAAGAAGTATCAACAAGAACAAAGCTATGGTGGAGAAGCTG 80
Query 61 CAAAATCATGGTATAGTTACTTCAGATGAAGTTGCTAAAGCTATGGAGGCTGTGGATAGA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 81 CAAAATCATGGTATAGTTACGTCAGATGAAGTTGCTAAAGCTATGGAGGCTGTGGATAGA 140
Query 121 GGCGTATTTGTAACAGATCGTTCCTCTGCTTATGTTGATAGTCCCATGTCTATTGGTTAT 180
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 141 GGCGTATTTGTACCAGATCGTTCCTCTGCTTATATAGATAGTCCCATGTCTATTGGGTAT 200
Query 181 AATGTGACTATATCAGCTCCTCATATGCATGCAATGTGTCTTCAACTTCTTGAAAAACAT 240
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 201 AATGTGACTATATCAGCACCTCATATGCACGCAATGTGTCTTCAACTTCTTGAAAAGCAT 260
Query 241 TTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGGGGACCGGGTACTTAACTGCTTGC 300
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 261 TTGAAACCGGGAATGCGTGTTCTTGATGTCGGCTCGGGGACTGGGTACTTAACGGCTTGC 320
Query 301 TTTGCGGTTATGGTTGGAACCGAAGGGCGTGCTATTGGTGTGGAACATATTCCTGAATTG 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 321 TTTGCGGTTATGGTTGGATCCGAAGGGCGTGCTATTGGTGTGGAACATATTCCTGAATTG 380
Query 361 GTGGCTTCTTCTGTTAAGAATATTGAAGCGAGTGCTGCTTCGCCATTTCTGAAAGAAGGG 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 381 GTGGCTTCTTCTGTTAAGAATATTGAAGCGAGTGCTGCTTCGCCATTGCTGAAAGAAGGG 440
Query 421 TCTCTTGCTGTTCATGTTGGTGATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGAT 480
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 441 TCTCTTGCTGTTCATGTTGGCGATGGGAGGAAAGGATGGGCTGAGTTTGCTCCTTATGAT 500
Query 481 GCTATTCACGTCGGAGCAGCAGCACCGGAGATCCCAGAGGCGTTGATTGATCAGTTGAAG 540
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 501 GCTATTCATGTCGGAGCAGCAGCACCGGAGATTCCAGAGGCATTGATTGATCAATTGAAA 560
Query 541 CCCGGTGGGAGACTGGTGATTCCGGTTGGGAACATATTCCAAGATCTGCAAGTGGTGGAT 600
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 561 CCTGGTGGGAGACTGGTGATCCCGGTTGGGAACATATTCCAAGATCTGCAAGTGGTGGAC 620
Query 601 AAGAACTCAGATGGTTCTGTTAGCATCAAGGATGAAACTTCAGTTCGTTATGTTCCTTTG 660
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 621 AAGAACTCAGATGGTTCGGTTAGCATCAAGAATGAAACTTCAGTTCGTTATGTTCCTTTG 680
Query 661 ACTAGCCGTGAAGCCCAGCTGAGAGGGGACTGATGAATATGCTCGTTGTACAGA 714
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 681 ACTAGCCGTGAAGCCCAGCTGAGAGGGGACTGATGAAT--GCTCGTTGTACAGA 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5