BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48340.1
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347926 jgi|Araly1|347926|fgenesh1_pg.C_scaffold_5001318 1724 0.0
> Ahg347926 jgi|Araly1|347926|fgenesh1_pg.C_scaffold_5001318
Length=1086
Score = 1724 bits (933), Expect = 0.0
Identities = 1038/1089 (95%), Gaps = 6/1089 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAACTTCTTTTGATATTTCTCTTTTCTCTTGTCATTCTCCAAACTGCTTGTGGA 60
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAAGCAACTTCTTTTGATATTTCTCTTTTCTCTTGTCATTCTCGAAACTGCTTGTGGA 60
Query 61 TTCGATTACGACGACAAGGAAATAGAAAGCGAAGAGGGCTTATCAACGCTTTATGATAGA 120
||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 61 TTCGATTACGAAGACAAGGAAATAGAGAGCGAAGAGGGCTTATCAAAGCTTTATGACAGA 120
Query 121 TGGAGGAGCCACCACTCCGTTCCTAGGAGTCTAAATGAAAGGGAGAAGAGATTCAACGTT 180
||||| |||||||| || |||||||||||||| |||| |||||||||||||||||||||
Sbjct 121 TGGAGAAGCCACCATTCAGTTCCTAGGAGTCTCCATGAGAGGGAGAAGAGATTCAACGTT 180
Query 181 TTCAGACACAATGTCATGCATGTCCACAA-TACCAACAAGAAGAACCGATCCTACAAACT 239
||||||||||||||||||||||| || || | |||||||||||||| |||||||||||||
Sbjct 181 TTCAGACACAATGTCATGCATGTTCATAACT-CCAACAAGAAGAACAGATCCTACAAACT 239
Query 240 TAAGCTCAACAAGTTTGCAGATTTAACAATTAATGAGTTCAAGAATGCATACACCGGTTC 299
||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||
Sbjct 240 TAAGCTCAACAAGTTTGCAGACTTAACGATTCATGAGTTCAAGAATGCCTACACCGGTTC 299
Query 300 CAACATCAAGCATCACAGAATGTTGCAAGGACCAAAACGCGGCTCAAAACAGTTCATGTA 359
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAAATCAAGCATCACAGGATGTTGCAAGGACCAAAACGCGGCTCAAAACAGTTCATGTA 359
Query 360 TGATCATGAGAATTTATCCAAATTACCGTCCTCCGTTGATTGGAGAAAGAAAGGTGCTGT 419
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGATCATGAGAATGTATCCAAATTACCGTCCTCCGTTGATTGGAGAAAGAAAGGTGCTGT 419
Query 420 CACTGAAATCAAGAATCAAGGAAAATGTGGAAGTTGTTGGGCATTCTCTACCGTAGCAGC 479
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 420 CACTGAAATCAAGAATCAAGGAAAGTGTGGAAGTTGTTGGGCATTCTCAACCGTAGCAGC 479
Query 480 TGTTGAGGGAATCAACAAGATCAAGACTAACAAACTGGTCTCACTGTCTGAACAAGAACT 539
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
Sbjct 480 TGTTGAGGGAATCAACAAGATCAAGACGAACAAGCTGGTCTCACTGTCTGAACAAGAATT 539
Query 540 AGTGGATTGTGATACTAAGCAGAATGAAGGTTGTAACGGAGGTCTTATGGAGATTGCATT 599
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 AGTGGATTGTGATACTAACCAGAATGAAGGTTGCAACGGAGGTCTTATGGAGATTGCATT 599
Query 600 TGAATTCATCAAGAAGAACGGTGGTATCACCACTGAAGATAGCTATCCTTATGAAGGTAT 659
|||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 600 TGAATTCATCAAGAAGAATGGTGGAATCACCACCGAAGATAGCTATCCTTACGAAGGTAT 659
Query 660 CGATGGAAAATGCGACGCTTCAAAGGATAACGGCGTGCTTGTGACGATAGATGGGCATGA 719
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGATGGAAAATGCGATGCTTCCAAGGATAACGGCGTGCTTGTGACGATAGATGGGCATGA 719
Query 720 AGATGTACCCGAAAACGACGAAAATGCTCTTCTTAAGGCTGTTGCAAACCAACCTGTATC 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATGTACCCGAAAACGACGAAAATGCTCTTCTTAAGGCTGTTGCAAACCAACCTGTATC 779
Query 780 TGTTGCAATTGATGCTGGAAGTTCAGATTTCCAGTTTTATTCAGAGGGAGTGTTTACGGG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGTTGCAATTGATGCTGGAAGTTCAGATTTCCAGTTTTATTCAGAGGGAGTGTTTACGGG 839
Query 840 ATCTTGTGGAACAGAGCTGAACCATGGTGTGGCAGCGGTCGGGTATGGATCTGAGAGG-G 898
| ||||||||||||||||||||||||||||||| ||||||| ||||||||| || || |
Sbjct 840 AGATTGTGGAACAGAGCTGAACCATGGTGTGGCAACGGTCGGCTATGGATCTCAG-GGTG 898
Query 899 GGAAAAAGTATTGGATAGTGAGAAACTCATGGGG-AGCTGAATGGGGAGAGGGAGGCTAT 957
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 899 GGAAAAAGTATTGGATAGTGAGAAACTCATGGGGGA-CTGAATGGGGAGAGGGAGGCTAT 957
Query 958 ATAAAGATTGAAAGAGAGATTGATGAACCGGAAGGGCGTTGCGGTATTGCGATGGAGGCA 1017
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 958 ATAAAGATTGAAAGAGGGATTGATGAACCGGAAGGGCGTTGCGGTATTGCGATGGAAGCA 1017
Query 1018 TCGTATCCGATCAAGCTATCGTCGTCTAATCCTACCCCGAAAGACGGTGATGTCAAAGAT 1077
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 TCGTATCCGATCAAGCTATCGTCTTCTAATCCTACCCCGAAAGACGGTGATGTCAAAGAT 1077
Query 1078 GAGCTCTAG 1086
|||||||||
Sbjct 1078 GAGCTCTAG 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5