BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48350.1
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485194 jgi|Araly1|485194|fgenesh2_kg.5__1186__AT3G48350.1 1810 0.0
> Ahg485194 jgi|Araly1|485194|fgenesh2_kg.5__1186__AT3G48350.1
Length=1268
Score = 1810 bits (980), Expect = 0.0
Identities = 1122/1190 (94%), Gaps = 11/1190 (1%)
Strand=Plus/Plus
Query 7 CAAGAAGAAGAATCCAAAGACATGAAACTTTTCTTTATTGTTCTCATCTCTTTTCTTTCC 66
||| |||||||||||||||||||||||||||||||||||| | || |||||||||||| |
Sbjct 1 CAACAAGAAGAATCCAAAGACATGAAACTTTTCTTTATTG-T-TC-TCTCTTTTCTTTGC 57
Query 67 CTCCTCCAAGCATCAAAAGGATTCGATTTCGACGAAAAAGAATTAGAAACCGAAGAGAAC 126
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 58 CTCCTCCAAGCATCAAAAGGATTCGATTTCGACGAAAAAGAATTAGAGACCGAAGAGAAC 117
Query 127 GTATGGAAGCTCTATGAGAGGTGGAGAGGCCACCACTCTGTATCCAGAGCCTCCCACGAG 186
|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 118 GTATGGAAGCTCTATGAGAGGTGGAGAGACCACCACTCTGTAACGAGAGCCTCCCACGAG 177
Query 187 GCAATAAAGCGGTTCAACGTTTTTAGACACAATGTCCTTCATGTCCACAGGACTAACAAA 246
||| |||||||||||||||||||||||||||| || |||||||||||||| || |||||
Sbjct 178 GCACTAAAGCGGTTCAACGTTTTTAGACACAACGTGCTTCATGTCCACAGAACGAACAAG 237
Query 247 AAGAACAAGCCTTACAAACTCAAGATCAATAGATTCGCCGACATAACGCACCACGAGTTT 306
|||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 238 AAGAACAAGCCTTACAAACTCAAGGTCAACAGATTCGCCGACATAACTCACCACGAGTTT 297
Query 307 AGAAGCTCCTACGCTGGCTCTAATGTTAAGCATCACCGAATGCTTCGTGGACCGAAGCGC 366
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 298 AGAAGCTCCTACGCTGGCTCAAATGTTAAGCATCACCGGATGCTTCGTGGACCGAAGCGC 357
Query 367 GGATCTGGTGGTTTCATGTATGAGAATGTGACCAGAGTTCCGAGTTCTGTTGATTGGCGA 426
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct 358 GGATCTGGTGGTTTCATGTATGAGAATGTAACAAGAGTTCCGAGTTCTGTTGATTGGAGA 417
Query 427 GAGAAAGGAGCTGTCACTGAGGTCAAGAATCAACAAGATTGTGGAAGTTGCTGGGCGTTT 486
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAGAAAGGAGCTGTCACTGAAGTCAAGAATCAACAAGATTGTGGAAGTTGCTGGGCGTTT 477
Query 487 TCGACGGTTGCAGCAGTGGAAGGGATAAACAAGATCAGAACAAACAAACTGGTTTCATTG 546
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCGACGGTTGCAGCAGTAGAAGGGATAAACAAGATCAGAACAAACAAACTGGTTTCATTG 537
Query 547 TCTGAACAAGAGCTTGTGGATTGTGACACTGAAGAGAATCAAGGTTGTGCAGGAGGTCTC 606
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCTGAACAAGAGCTAGTTGATTGTGACACTGAAGAGAATCAAGGTTGTGCAGGAGGTCTC 597
Query 607 ATGGAACCTGCGTTTGAATTTATAAAGAACAATGGTGGCATCAAAACCGAAGAGACTTAT 666
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATGGAACCTGCGTTTGAATTCATAAAGAACAATGGTGGCATCAAAACCGAAGAGACTTAC 657
Query 667 CCTTACGATTCCAGTGACGTTCAATTCTGTAGAGCTAATAGTATTGGTGGAGAAACTGTA 726
|||||||| |||| ||| ||||||||||| |||||||| ||||||| |||||||||||||
Sbjct 658 CCTTACGACTCCAATGATGTTCAATTCTGCAGAGCTAAGAGTATTGATGGAGAAACTGTA 717
Query 727 ACCATCGATGGACACGAACACGTCCCTGAGAATGATGAGGAAGAACTTCTCAAAGCTGTT 786
|| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 ACGATTGATGGACACGAACACGTCCCTGAGAATGATGAGGAAGCACTTCTCAAAGCTGTT 777
Query 787 GCTCACCAGCCTGTCTCTGTAGCTATTGATGCTGGGAGCTCAGATTTCCAGCTTTACTCT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCTCACCAGCCTGTCTCTGTAGCTATTGATGCTGGGAGCTCAGATTTCCAGCTTTACTCT 837
Query 847 GAGGGTGTGTTTATCGGAGAATGCGGGACTCAGTTGAACCACGGGGTGGTGATTGTTGGG 906
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 838 GAGGGTGTGTTTATCGGAGAGTGCGGGACTCAGTTAAACCACGGGGTGGTGATTGTCGGG 897
Query 907 TATGGAGAGACCAAAAATGGAACAAAATATTGGATAGTAAGGAACTCATGGGGACCTGAA 966
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 898 TATGGAGAGACCAAAAATGGAACAAAATATTGGATAGTGAGGAACTCATGGGGACCGGAA 957
Query 967 TGGGGAGAAGGAGGCTATGTTCGGATAGAAAGAGGAATATCGGAGAATGAAGGACGTTGC 1026
|||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||
Sbjct 958 TGGGGAGAAGGAGGTTATGTTCGGATAGAAAGAAAAATATCTGAGAATGAAGGACGTTGT 1017
Query 1027 GGTATAGCCATGGAGGCTTCTTATCCCACCAAGCTCTCTTCGACTCCTTCTACTCATGAG 1086
||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||| ||||
Sbjct 1018 GGTATAGCCATGGAGGCTTCTTATCCCACCAAGGTTTCTTCCACTCCCTCTACTCCTGAG 1077
Query 1087 TCAGTAGTTCGTGATGATGTTAAAGACGA------G-CTCTAGAGACTTTAAGTCATTGA 1139
||||||||||| |||||| |||||||||| | ||||||||||| |||||||||||
Sbjct 1078 TCAGTAGTTCGCGATGATTTTAAAGACGAACTCTAGTCTCTAGAGACTCTAAGTCATTGA 1137
Query 1140 AAACTGAATTTCGAACCATTCTTCTAGTGAGCTTACACTGAGTTTATTAT 1189
|||||| ||||| ||| ||||||||||||| |||||||| ||||||||||
Sbjct 1138 AAACTGGATTTC-AACGATTCTTCTAGTGATCTTACACTAAGTTTATTAT 1186
Score = 122 bits (66), Expect = 5e-27
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1227 TTATCGTGTATTCATCTTAAATTGAGACGATTTTTATCTCCTTGTAATATTGGCCAGCAT 1286
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1183 TTATCGTGTATTCATCTTAAATTGAGACGAGTTTTATCTCCTTTTAATATTGGCCAGCAT 1242
Query 1287 -T-TGC-TTTGCGGAAAAATGGCGTT 1309
| | | |||||||||||||||||||
Sbjct 1243 ATATTCCTTTGCGGAAAAATGGCGTT 1268
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49102317096
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5