BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48350.1 Length=1313 Score E Sequences producing significant alignments: (Bits) Value Ahg485194 jgi|Araly1|485194|fgenesh2_kg.5__1186__AT3G48350.1 1810 0.0 > Ahg485194 jgi|Araly1|485194|fgenesh2_kg.5__1186__AT3G48350.1 Length=1268 Score = 1810 bits (980), Expect = 0.0 Identities = 1122/1190 (94%), Gaps = 11/1190 (1%) Strand=Plus/Plus Query 7 CAAGAAGAAGAATCCAAAGACATGAAACTTTTCTTTATTGTTCTCATCTCTTTTCTTTCC 66 ||| |||||||||||||||||||||||||||||||||||| | || |||||||||||| | Sbjct 1 CAACAAGAAGAATCCAAAGACATGAAACTTTTCTTTATTG-T-TC-TCTCTTTTCTTTGC 57 Query 67 CTCCTCCAAGCATCAAAAGGATTCGATTTCGACGAAAAAGAATTAGAAACCGAAGAGAAC 126 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 58 CTCCTCCAAGCATCAAAAGGATTCGATTTCGACGAAAAAGAATTAGAGACCGAAGAGAAC 117 Query 127 GTATGGAAGCTCTATGAGAGGTGGAGAGGCCACCACTCTGTATCCAGAGCCTCCCACGAG 186 |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| Sbjct 118 GTATGGAAGCTCTATGAGAGGTGGAGAGACCACCACTCTGTAACGAGAGCCTCCCACGAG 177 Query 187 GCAATAAAGCGGTTCAACGTTTTTAGACACAATGTCCTTCATGTCCACAGGACTAACAAA 246 ||| |||||||||||||||||||||||||||| || |||||||||||||| || ||||| Sbjct 178 GCACTAAAGCGGTTCAACGTTTTTAGACACAACGTGCTTCATGTCCACAGAACGAACAAG 237 Query 247 AAGAACAAGCCTTACAAACTCAAGATCAATAGATTCGCCGACATAACGCACCACGAGTTT 306 |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||| Sbjct 238 AAGAACAAGCCTTACAAACTCAAGGTCAACAGATTCGCCGACATAACTCACCACGAGTTT 297 Query 307 AGAAGCTCCTACGCTGGCTCTAATGTTAAGCATCACCGAATGCTTCGTGGACCGAAGCGC 366 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 298 AGAAGCTCCTACGCTGGCTCAAATGTTAAGCATCACCGGATGCTTCGTGGACCGAAGCGC 357 Query 367 GGATCTGGTGGTTTCATGTATGAGAATGTGACCAGAGTTCCGAGTTCTGTTGATTGGCGA 426 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||| || Sbjct 358 GGATCTGGTGGTTTCATGTATGAGAATGTAACAAGAGTTCCGAGTTCTGTTGATTGGAGA 417 Query 427 GAGAAAGGAGCTGTCACTGAGGTCAAGAATCAACAAGATTGTGGAAGTTGCTGGGCGTTT 486 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 418 GAGAAAGGAGCTGTCACTGAAGTCAAGAATCAACAAGATTGTGGAAGTTGCTGGGCGTTT 477 Query 487 TCGACGGTTGCAGCAGTGGAAGGGATAAACAAGATCAGAACAAACAAACTGGTTTCATTG 546 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TCGACGGTTGCAGCAGTAGAAGGGATAAACAAGATCAGAACAAACAAACTGGTTTCATTG 537 Query 547 TCTGAACAAGAGCTTGTGGATTGTGACACTGAAGAGAATCAAGGTTGTGCAGGAGGTCTC 606 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TCTGAACAAGAGCTAGTTGATTGTGACACTGAAGAGAATCAAGGTTGTGCAGGAGGTCTC 597 Query 607 ATGGAACCTGCGTTTGAATTTATAAAGAACAATGGTGGCATCAAAACCGAAGAGACTTAT 666 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 598 ATGGAACCTGCGTTTGAATTCATAAAGAACAATGGTGGCATCAAAACCGAAGAGACTTAC 657 Query 667 CCTTACGATTCCAGTGACGTTCAATTCTGTAGAGCTAATAGTATTGGTGGAGAAACTGTA 726 |||||||| |||| ||| ||||||||||| |||||||| ||||||| ||||||||||||| Sbjct 658 CCTTACGACTCCAATGATGTTCAATTCTGCAGAGCTAAGAGTATTGATGGAGAAACTGTA 717 Query 727 ACCATCGATGGACACGAACACGTCCCTGAGAATGATGAGGAAGAACTTCTCAAAGCTGTT 786 || || ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 718 ACGATTGATGGACACGAACACGTCCCTGAGAATGATGAGGAAGCACTTCTCAAAGCTGTT 777 Query 787 GCTCACCAGCCTGTCTCTGTAGCTATTGATGCTGGGAGCTCAGATTTCCAGCTTTACTCT 846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 GCTCACCAGCCTGTCTCTGTAGCTATTGATGCTGGGAGCTCAGATTTCCAGCTTTACTCT 837 Query 847 GAGGGTGTGTTTATCGGAGAATGCGGGACTCAGTTGAACCACGGGGTGGTGATTGTTGGG 906 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||| Sbjct 838 GAGGGTGTGTTTATCGGAGAGTGCGGGACTCAGTTAAACCACGGGGTGGTGATTGTCGGG 897 Query 907 TATGGAGAGACCAAAAATGGAACAAAATATTGGATAGTAAGGAACTCATGGGGACCTGAA 966 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 898 TATGGAGAGACCAAAAATGGAACAAAATATTGGATAGTGAGGAACTCATGGGGACCGGAA 957 Query 967 TGGGGAGAAGGAGGCTATGTTCGGATAGAAAGAGGAATATCGGAGAATGAAGGACGTTGC 1026 |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||| Sbjct 958 TGGGGAGAAGGAGGTTATGTTCGGATAGAAAGAAAAATATCTGAGAATGAAGGACGTTGT 1017 Query 1027 GGTATAGCCATGGAGGCTTCTTATCCCACCAAGCTCTCTTCGACTCCTTCTACTCATGAG 1086 ||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||| |||| Sbjct 1018 GGTATAGCCATGGAGGCTTCTTATCCCACCAAGGTTTCTTCCACTCCCTCTACTCCTGAG 1077 Query 1087 TCAGTAGTTCGTGATGATGTTAAAGACGA------G-CTCTAGAGACTTTAAGTCATTGA 1139 ||||||||||| |||||| |||||||||| | ||||||||||| ||||||||||| Sbjct 1078 TCAGTAGTTCGCGATGATTTTAAAGACGAACTCTAGTCTCTAGAGACTCTAAGTCATTGA 1137 Query 1140 AAACTGAATTTCGAACCATTCTTCTAGTGAGCTTACACTGAGTTTATTAT 1189 |||||| ||||| ||| ||||||||||||| |||||||| |||||||||| Sbjct 1138 AAACTGGATTTC-AACGATTCTTCTAGTGATCTTACACTAAGTTTATTAT 1186 Score = 122 bits (66), Expect = 5e-27 Identities = 80/86 (93%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 1227 TTATCGTGTATTCATCTTAAATTGAGACGATTTTTATCTCCTTGTAATATTGGCCAGCAT 1286 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 1183 TTATCGTGTATTCATCTTAAATTGAGACGAGTTTTATCTCCTTTTAATATTGGCCAGCAT 1242 Query 1287 -T-TGC-TTTGCGGAAAAATGGCGTT 1309 | | | ||||||||||||||||||| Sbjct 1243 ATATTCCTTTGCGGAAAAATGGCGTT 1268 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49102317096 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5