BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48360.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323436 jgi|Araly1|323436|fgenesh1_pm.C_scaffold_5000980 1661 0.0
> Ahg323436 jgi|Araly1|323436|fgenesh1_pm.C_scaffold_5000980
Length=1113
Score = 1661 bits (899), Expect = 0.0
Identities = 1032/1095 (94%), Gaps = 14/1095 (1%)
Strand=Plus/Plus
Query 55 ATGGAAGCTGTTCTTGTCGCAATGTCCGTCCCCGCCACAACGGAAGACGACGGATTTTCG 114
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAAGCTGTTCTTGTCGCGATGTCCGTACCCGCCACAACTGAAGACGACGGATTTTCG 60
Query 115 TTAATCACCGATAAACTTTCATATAATCTAACGCCGACGTCGGACGTTGAGATCGTTACC 174
|||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||
Sbjct 61 TTAATCACCGATAAACTTTCATATAACCTAACGACAACGTCGGACGTTGAGATCGTTACC 120
Query 175 TCCGATAACCGTCGGATTCCGGCACACTCCGGCGTTCTGGCTTCAGCTTCACCGGTACTG 234
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 TCCAATAACCGTCGGATTCCGGCACACTCCGGTGTTCTGGCTTCAGCTTCACCGGTACTA 180
Query 235 ATGAACATCATGAAGAAACCGATGAGACGTTACAGAGGCTGTGGATCTAAAAGAGTCATC 294
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGAACATCATGAAGAAACCGGTGAGACGTTACAGAGGCTGTGGATCTAAAAGAGTCATC 240
Query 295 AAGATTCTTGGCGTTCCATGCGACGCCGTTTCGGTTTTTATCAAATTCCTCTACTCTTCT 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AAGATTCTTGGCGTTCCATGCGACGCCGTTTCGGTTTTGATCAAATTCCTCTACTCTTCT 300
Query 355 A---------GTTTGACGGAGGATGAGATGGAGAGATATGGAATCCATCTTTTAGCGTTG 405
| |||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 301 AGGTTGGTTTGTTTGACGGAGGATGAGATGGAGAGACACGGAATCCATCTTTTGGCGTTG 360
Query 406 TCTCACGTCTACATGGTCACCCAGCTGAAGCAACGGTGCTCAAAAGGCGTTGTACA-ACG 464
||||| |||||||||||||| ||||| |||||||||||||||||| |||||||||| | |
Sbjct 361 TCTCATGTCTACATGGTCACGCAGCTCAAGCAACGGTGCTCAAAATGCGTTGTACAGA-G 419
Query 465 TTTAACTACAGAGAACGTAGTCGACGTCCTCCAGCTAGCTCGGCTCTGCGACGCACCCGA 524
||||| || ||||||||||||||||| ||||||||||||||||| || || ||||| ||
Sbjct 420 GTTAACGACGGAGAACGTAGTCGACGTTCTCCAGCTAGCTCGGCTTTGTGATGCACCTGA 479
Query 525 TGTTTGCCTTCGATCTATGCGTCTGATCCATTCGCAGTTTAAGACCGTTGAGCAGACTGA 584
||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||| ||
Sbjct 480 TGTTTGCCTTCGATCTATGCGCCTGATACATTTGAAGTTTAAGACCGTTGAGCAGACCGA 539
Query 585 AGGATGGAAGTTTATTCAAGAACATGATCCTTTCCTCGAGCTCGACATTCTCCAGTTCAT 644
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGGATGGAAGTTTATTCAGGAACATGATCCTTTCCTCGAGCTCGACATTCTCCAGTTCAT 599
Query 645 CGATGACGCCGAATCGAGGAAGAAAAGAAGGCGACGACATAGAAAGGAGCAGGATCTTTA 704
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 CGATGACGCCGAATCGAGGAAGAAAAGAAGACGACGACATAGAAAGGAGCAGGATCTTTA 659
Query 705 CATGCAACTAAGCGAGGCAATGGAGTGCATAGAGCACATATGCACACAAGGTTGTACATT 764
|||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CATGCAGCTAAGCGAAGCAATGGAGTGTATAGAGCACATATGCACACAAGGTTGTACATT 719
Query 765 GGTCGGTCCATCAAACGTAGTAGATAACAACAAAAAGTCAATGACTGCGGAAAAGTCAGA 824
|||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||| |
Sbjct 720 GGTCGGTCCACCAAACGTAGTAG---ACAACAACAAGTCAATGGTTGCGGAAAAGTCAAA 776
Query 825 GCCTTGTAAGGCGTTTTCCACGTGTTATGGTCTTCAGCTTTTGATACGTCACTTTGCCGT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCCTTGTAAGGCGTTTTCCACGTGTTATGGTCTTCAGCTTTTGATACGTCACTTTGCCGT 836
Query 885 ATGCAAGAGGAGGAATAACGATAAGGGTTGTCTTCGTTGCAAGCGGATGCTTCAACTCTT 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATGCAAGAGGAGGAATAACGATAAGGGTTGTCTTCGTTGCAAGCGGATGCTTCAACTCTT 896
Query 945 TAGACTCCATTCTTTGATTTGTGATCAACCCGATTCTTGTCGCGTCCCTCTCTGCAGGCA 1004
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 897 TAGACTCCATTCTTTGATTTGCGATCAACCGGATTCTTGTCGCGTCCCTCTTTGCAGGCA 956
Query 1005 ATTTAGGAAACGGGGAGAACAAGACAAGAAAATGGGTGAAGACACCAAGTGGAAGCTTCT 1064
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ATTTAAGAAAAGGGGAGAACAAGACAAGAAAATGGGTGAAGACACCAAGTGGAAGCTTCT 1016
Query 1065 GGTGACAAGGGTTGTGTCTGCAAAAGCTATGACGTCGTTGTGTCAGTCAAAGAAGAACAA 1124
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1017 GGTGACAAGGGTTGTGTCTGCAAAAGCTATGTCTTCGTTGTGTCAGTCAAAGAAGAACAA 1076
Query 1125 ATGTGAACAAGCACA 1139
||||||| |||||||
Sbjct 1077 ATGTGAAGAAGCACA 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5