BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48380.3
Length=2149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485198 jgi|Araly1|485198|fgenesh2_kg.5__1190__AT3G48380.2 2495 0.0
> Ahg485198 jgi|Araly1|485198|fgenesh2_kg.5__1190__AT3G48380.2
Length=2061
Score = 2495 bits (1351), Expect = 0.0
Identities = 1622/1751 (93%), Gaps = 26/1751 (1%)
Strand=Plus/Plus
Query 19 AAACTGATTTTGCCTGTTTGGTTTTGGATCCGAGATGGTTCCTTCGAGCGAGACAGCGAC 78
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACTGATTTTGGCTGTTTGGTTTTGGATCCGAGATGGTTCCTTCGAGCGAGACAGCGAC 60
Query 79 CGTACGAGTCCTTTGCCAAAAGCTGCTTCTCTCACCGAACCATCCTGGAACTCTCCAATG 138
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 61 CGTACGAGTCCTTTGCCAAAAGCTGCTTCTCTCAGGGAACCAACCTGGAACTCTTCAATG 120
Query 139 GCTCATTGGTTCCCCATTTTTCCCGCCTTTCACCGTCGTCTCCACTTTCCGATGTATCCA 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCATTGGTTCCCCATTTTTCCCGCCTTTCACCGTCGTCTCCACTTTCCGATGTATCCA 180
Query 199 TCACTCTCCTGATTTCCAGCAAGAATCTGATGATCTCCGGAAGTTGTTACCAAAAGGTTT 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCACTCTCCTGATTTCCAGCAAGAATCTGATGATCTCCGGAAGTTGTTACCAAAAGGTTT 240
Query 259 TGAAGTCATTGGAGGTCTGATAATTGGAGATTCTGATGCTGAGAAAAGCGCATTTGAGGC 318
|||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 241 TGAAGTTATTGGAGGTCTGATTGTTGGGGATTCTGATGCTGAGAAAACCGCATTTGAGGC 300
Query 319 GGTTCGAGCTGCTCGTAGATTGCGAAAGCATTTATCTGAAGGTGGAGAGTTAGATGATGA 378
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GGTTCGAGCTGCTCGTAGATTGCGAAAGCATTTATCTGAAGGCGGAGAGTTAGATGATGA 360
Query 379 AAAGATAGTTGGGGCTAGTTGCGATGTAGGCACTGGTACCATTCACTTTTTCATCTCTAA 438
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 361 AAAGATAGTTGGGGCTAGTTGCGATGCAGGAACTGGTACCATTCACTTTTTCATCTCTAA 420
Query 439 AAGTGAAAACACAACGAAA-CTTGAGCCTGTTGGTTCTGTTGTGTATGAGGATAAGTCTG 497
|||||||||| ||| ||| || |||||||||||||| |||||||||||||| |||||||
Sbjct 421 AAGTGAAAACTTAAC-AAAGCTAGAGCCTGTTGGTTCCGTTGTGTATGAGGAGAAGTCTG 479
Query 498 -GAAAGTATTTATGGGAGAACGGTTGTTTGCTTCACTGTGAGCTTCCAATCAAGTTGCCA 556
|||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 480 AGAAA-TATCTATGGGAGAACGGTTGCTTGCTTCACTGTGAGCTTCCGATCAAGTTGCCA 538
Query 557 TTTTATTATCCT-GCAAGCTCGCCCTCTGATTCGAAGGAGAAGTTTTCAGATGCAATTGA 615
|| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCTATT-TCCCCGCAAGCTCGCCCTCTGATTCGAAGGAGAAGTTTTCAGATGCAATTGA 597
Query 616 TGCAGTTATTACTCAGTTTAAAGAACCATATGTTGTATACATAGCTGAGACCTTAAAGAA 675
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 598 TGCAGTTATTACTCAGTTTAAAGAACCATATGCTGTATACATAGCCGAGACCTTAAAGAA 657
Query 676 AGCTTCTGGAGGCGTTCCAAAGCCAGTCGTCCTCCGTGGTAAAGATTTGGGTTTTGGTGC 735
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 658 AGCTTCTGGAGATGTTCCAAAGCCAGTCGTCCTCCGCGGTAAAGATTTGGGTTTTGGTGC 717
Query 736 TGATGCATCAAACATTAATCGTCTTCCTTCTGCTGACCAAGTATCTGACATTAAGATGTT 795
|||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||
Sbjct 718 TGATGCATCAAACATTAACCGTCTTCCTTCTGCTGACCAAGTATCTCACACTAAGATGTT 777
Query 796 GTCATGCTCACATTTGTGTCTGAATAACAAAACTGCTCCAGCAGTAAATTCGGCTGAGAA 855
|||||| || ||||| | |||||| | |||||||||| ||||||| ||||| ||||||||
Sbjct 778 GTCATGTTCCCATTTCTTTCTGAACAGCAAAACTGCTGCAGCAGTTAATTCAGCTGAGAA 837
Query 856 TGCAGATAAAATCCACATATCTGTTCTGCTTAATAGATCTGAAAAA-CTTCCAACCTCTG 914
|||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||
Sbjct 838 TGCAGATAAAATCCACATATCTGTTCTGCTTAATCGATCTGAAAAATCT-CCGACCTCTG 896
Query 915 GTGCCCCTGTTGCAGAATATTTTCCAGCTATGGAAGAAGCAAGGCTCATTGTTGTTGATT 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTGCCCCTGTTGCAGAATATTTTCCAGCTATGGAAGAAGCAAGGCTCATTGTTGTTGATT 956
Query 975 TGAATCTTGATGTACTTACTTATGCACCCAAGGATCTTCCACTTATGCACGCAGTCTCAA 1034
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 957 TGAATCTTGATGTACTTGTTTATGCACCCAAGGATCTTCCACTTATGCACGCTGTCTCAA 1016
Query 1035 ATTTAGTTATTCCTGCTTTGGTTGATCAGTTATATTCCCTGAAGAAGATTATCTTACCAC 1094
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1017 ATTTAGTTATCCCTGCTTTGGTTGATCAGTTATATTCACTGAAGAAGATCATCTTACCTT 1076
Query 1095 ACCTCTTGGTGGAACATCCTCAGTTGCGTATATATCACTTTAATCCACCCGGGGTATTAC 1154
|||||||| || | | | || ||||||||||| |||||||| || |||||||
Sbjct 1077 ACCTCTTGATG-----T--T-A----CGAATATATCACTTCAATCCACCTGGAGTATTAC 1124
Query 1155 ATCCAATAACAAGTATGTACGAGCTCAACTACGGAGAGACAGAAATGAAGCAAGTCGATG 1214
|||||||||| | ||| |||||||| ||||| || ||||| |||||||||||||||||||
Sbjct 1125 ATCCAATAACGACTATATACGAGCTTAACTATGGGGAGACTGAAATGAAGCAAGTCGATG 1184
Query 1215 TTAGAAAAT-TGCTACACTTGAGGCTTGG-TCTGCCACTGGATCGCCCTCTTTTAAGAAT 1272
||||||||| | |||||||| ||||| || | ||||||||||||| || || ||||||
Sbjct 1185 TTAGAAAATCT-CTACACTTAAGGCT-GGATTTGCCACTGGATCGTCCACTCCTAAGAAC 1242
Query 1273 TGCTAATGCCTTGGATTTGTCTGTGAATGATGACTCAAAGAGTAACATGAACAGAAGGGG 1332
||||||||||||||||||||||||||||||||| |||| | ||||||| || | ||||||
Sbjct 1243 TGCTAATGCCTTGGATTTGTCTGTGAATGATGATTCAAGGGGTAACATAAAGAAAAGGGG 1302
Query 1333 TTCCACCTTGCTCAAAGATGTGCATATTGGAATCCCTAGCAGCGGAGTTTCGGAGGGTGT 1392
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1303 TTCCTTCTTGCTCAAAGATGTGCATATTGGAATCCCTAGCAGTGGAGTCGCGGAGGGTGT 1362
Query 1393 GGCATCTATTATCCAAGGTTCTTATGAGTATTATCATTATCTTCAGGATGGCTTTGATGA 1452
||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1363 TGCATCAATTATCCAAGGTTCTTATGAGTATTATCATTATCTCCAGGATAGCTTTGATGA 1422
Query 1453 CTCGGGATGGGGATGTGCTTACCGATCATTGCAAACTATTATCTCGTGGTTCAGACTTCA 1512
|||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1423 CTCGGGATGGGGCTGTGCTTACCGATCACTGCAAACTATCATCTCGTGGTTCAGACTTCA 1482
Query 1513 ACACTACACATCCATAT-CTGTACCTTCACATAGGGAAATACAGCAGACACTCGTGGAAA 1571
||||| |||||| | | |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1483 GCACTATACATCCGT-TGCTGTTCCTTCACATAGGGAAATACAGCAGACACTTGTGGAAA 1541
Query 1572 TAGGTGACAAGGATCCTTCGTTTGTAGGATCGCGTGAATGGATTGGTGCCATAGAGTTAA 1631
||||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |
Sbjct 1542 TAGGTGACAAGGATCCTTCGTTTATAGGATCTCGCGAGTGGATTGGTGCCATAGAGTTGA 1601
Query 1632 GCTTTGTGTTGGATAAACTTCTTGGTGTAAGTTGCAAAATTATGAACTTCAGATCCGGAT 1691
| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1602 GTTTTGTGCTGGATAAACTTCTTGGTGTAAGTTGCAAAATCATGAACTTCAGATCAGGAT 1661
Query 1692 CAGAGCTCCCAGAGAAATGCCGGGAGTTAGCTATGCACTTTGAGAACCAAGGAACTCCAA 1751
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1662 CGGAGCTCCCAGAGAAATGCCGTGAGTTAGCTATGCACTTTGAGAACCAAGGAACTCCAA 1721
Query 1752 TAATGATTGGA 1762
|||||||||||
Sbjct 1722 TAATGATTGGA 1732
Score = 324 bits (175), Expect = 2e-87
Identities = 253/287 (88%), Gaps = 19/287 (7%)
Strand=Plus/Plus
Query 1844 TGCGCGTTCCTGATCCTGGATCCGCATTATACAGGAAGTGAAGATCACAAGAAGATCGTC 1903
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1790 TGCGCGTTCCTGATCCTGGACCCGCATTATACAGGAAGTGAAGATCACAAGAAGATCGTC 1849
Query 1904 AATGGTGGTTGGTGTGGGTGGAAAAAAGCTGTTGATAGCAAAGGAAAAAGCTTTTTCTTG 1963
|||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 1850 AATGGTGGATGGTGTGGGTGGAAAAAAGCTGTTGATAGCAAAGGGAAGAGTTTTTTCTTG 1909
Query 1964 CACAACAAGTTTTACAATCTTCTTCTTCCTCAACGTCCCAACATGGTTTAATTATCATTT 2023
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1910 CACAACAAGTTTTACAATCTTCTTCTTCCTCAGCGTCCCAACATGGTTTAATTATCATT- 1968
Query 2024 TCCTACA-TGTAACAACAATTACtttttt-tCTTATCACAGTTTTAGCCTGCTCTGGTCT 2081
| ||| | || | | || ||||| ||||| |||||||||| | | || |||||
Sbjct 1969 -CA-ACAAT-TA-CTTC--TT--TTTTTGGTCTTACCACAGTTTTA-C-T-CT--GGTCT 2015
Query 2082 CC--TGATAGTGCAAAAAATGGAGTTTTCAAGAAATTTGAATTTCAG 2126
|| |||||||||||||| |||||||| ||||||||| |||| |||
Sbjct 2016 CCCCTGATAGTGCAAAAA-TGGAGTTTGAAAGAAATTTTAATTCCAG 2061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80865590135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5