BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48390.1
Length=2344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323438 jgi|Araly1|323438|fgenesh1_pm.C_scaffold_5000982 2673 0.0
> Ahg323438 jgi|Araly1|323438|fgenesh1_pm.C_scaffold_5000982
Length=1941
Score = 2673 bits (1447), Expect = 0.0
Identities = 1735/1871 (93%), Gaps = 32/1871 (2%)
Strand=Plus/Plus
Query 272 AGTCTCCTCCT-CTGTTTGCTGTCAAGAAAGATGATGATAAAGATCATACTTGTGATACT 330
||||||||||| || |||||||| ||||||||||| | ||||||| || ||||||||||
Sbjct 83 AGTCTCCTCCTCCT-TTTGCTGTAAAGAAAGATGA-G--AAAGATCCTAATTGTGATACT 138
Query 331 GGAGAGGAACCTTATGCACTTGTTGGTTCCCCTGTGTTTA-ACCCTTTGGAAGATTACAA 389
||||||||||||||||||||||||||||| || ||| ||| |||||||||| ||||||||
Sbjct 139 GGAGAGGAACCTTATGCACTTGTTGGTTCGCCGGTG-TTAGACCCTTTGGATGATTACAA 197
Query 390 AAGAGAAGTAGTTTCCATCATCGATGAATACTTTAGCTCTGGGGATGTTGAAGTGGCTGC 449
|||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 198 AAGAAAAGTAGTTTCCATCATCGAAGAATACTTTAGCTCTGGGGATGGGGAAGCGGCTGC 257
Query 450 TTCTGACCTTATGGATCTTGGTTTGAGCGAATACCATCCTTATTTTGTCAAGAGGCTTGT 509
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 258 TTCTGACCTTATGGATCTTGGTTTGAGTGAATACCATCCTTATTTTGTCAAGAGGCTTGT 317
Query 510 TTCCATGGCCATGGACAGGGGCAATAAGGAGAAGGAGAAGGCTTCGGTGTTACTCTCGCG 569
||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 318 TTCGATGGCCATGGACAGGGGCGATAAGGAGAAGGAGAAGGCTTCGGTGTTGCTCTCGCG 377
Query 570 GTTGTACGCTCTTGTTGTTTCACCTGATCAAATCAGGGTTGGGTTTATTAGACTGCTTGA 629
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 378 GTTGTACGCTGATGTTGTTTCACCTGATCAAATCAGGGTTGGGTTTATTAGACTGCTCGA 437
Query 630 GTCCGTTGGTGATCTTGCTTTGGACATACCTGATGCTGTTAATGTACTTGCTTTGTTTAT 689
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 438 GTCCGTTGGTGATCTTGCTTTGGACATACCTGATGCTGTTAATGTCCTTGCTTTGTTTAT 497
Query 690 TGCCCGGGCCATCGTCGATGAAATTCTTCCCCCCGTTTTTCTGGCTAGAGCAAAGAAGAC 749
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 498 TGCTCGGGCCATCGTCGATGAAATTCTTCCCCCGGTTTTTCTAGCTAGAGCAAAGAAGAC 557
Query 750 TCTACCGCATTCCTCTCAAGGGTTTCAGGTTATCTTAGTTTCAGAAAATAGCTATCTCTC 809
||||||| |||||||| |||||||||||| ||||||| | ||||||| |||||||||||
Sbjct 558 TCTACCGGATTCCTCTGAAGGGTTTCAGGCTATCTTAACTGCAGAAAAGAGCTATCTCTC 617
Query 810 TGCTCCTCACCACGCAGAGCTAGTGGAGACAAAATGGGGTGGGAGTACTCACATTACGGT 869
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 618 TGCTCCTCACCACGCAGAGCTAGTGGAGAAAAAATGGGGTGGGAGTACTCACATTACGGT 677
Query 870 AGAAGAAACAAAGAGAAAGATATCTGA-ATTTTTGAATGAATATGTAGAGAATGGTGACA 928
|||| ||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct 678 AGAAAAAACAAAGAGAAAGATATCCGACATTTT-GAAGGAATATGTAGAGAATGGTGACA 736
Query 929 CTCGTGAAGCTTGTAGATGCATCAGGGAGTTAGGTGTCTCGTTTTTCCATCACGAGATCG 988
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 737 CTCGTGAGGCTTGTAGATGCATCAGGGAGTTAGGTGTCCCGTTTTTCCATCACGAGGTTG 796
Query 989 TGAAGAGTGGTTTGGTTCTAGTGATGGAGTCCCGAACATCCGAGCCGCTGATACTAAAAT 1048
||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 797 TGAAGAGAGGTTTGGTTCTAGTGATGGAGTCTAGAACATCTGAGCCGCTGATACTAAAAC 856
Query 1049 TGTTGAAAGAAGCTACAGAAGAAGGTCTCATTAGTTCGAGTCAAATGGCGAAAGGGTTCT 1108
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 857 TGTTGAAAGAAGCTTCAGAAGAAGGTCTCATCAGTTCGAGTCAAATGGCGAAAGGGTTCT 916
Query 1109 CCCGAGTAGCAGATAGTCTTGATGATCTTTCTCTTGACATCCCATCTGCTAAAACTCTGT 1168
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 917 CCCGAGTAGCAGAGAGTCTTGATGACCTTTCTCTTGACATCCCATCTGCTAAAACTCTGT 976
Query 1169 TTGAGTCAATAGTTCCCAAGGCTATAATAGGAGGTTGGCTCGACGAAGATTCGTTTAAAG 1228
|||| |||||||||||||||||||||| | ||||||||||||||||||| | |||||||
Sbjct 977 TTGAATCAATAGTTCCCAAGGCTATAACCGAAGGTTGGCTCGACGAAGATACATTTAAAG 1036
Query 1229 AACGCTCTGATCAAAATGGGGGC--A------G----CGAAAATCTAAGG-CGGTT-CAA 1274
|||| |||||||||||||| ||| | | |||||| || || | || |||
Sbjct 1037 AACGTTCTGATCAAAATGGAGGCTTACCAATTGAAGACGAAAAACTCAGATC--TTACAA 1094
Query 1275 GAAGGATGCAG-AGACCATAATTCAAGAGTATTTCCTTTCTGATGATATCCCCGAGCTAA 1333
||| |||| | | || ||| |||| |||||||||||||||||||| || ||||||||||
Sbjct 1095 GAAAGATGTGGTA-ACTATAGTTCAGGAGTATTTCCTTTCTGATGACATTCCCGAGCTAA 1153
Query 1334 TCCGCAGTCTTGAAGATTTAGGATTACCCGAATATAACCCGGTATTCTTGAAGAAACTCA 1393
|||||||||||| |||| |||||| |||||||||||||| |||||| |||||||||||||
Sbjct 1154 TCCGCAGTCTTGTAGATATAGGATCACCCGAATATAACCTGGTATTTTTGAAGAAACTCA 1213
Query 1394 TCACTCTTGCTATGGATAGGAAGAACAAAGAGAAAGAAATGGCTTCTGTTTTTCTCGCTT 1453
|||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||
Sbjct 1214 TCACTCTTGCTATGGATAGGAAGAACAAGGAGAAAGAAATGGTTTCTGTTCTTCTCTCTG 1273
Query 1454 CTCTTCACATGGAGATGTTCTCAACAGAAGACTTCATAAATGGTTTCATCATGCTCCTCG 1513
|||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||
Sbjct 1274 CTCTTCACATGGAGATGTTCTCAACAAAAGATTTCATAAACGGATTCATCATGCTCCTCG 1333
Query 1514 AATCCGCAGAAGATACAGCATTAGACATCTTAGCAGCATCAGACGAGCTTGCTCTGTTTC 1573
|||| ||||| || ||||||||||| ||||||| |||||| |||||||||||| ||||||
Sbjct 1334 AATCTGCAGATGACACAGCATTAGATATCTTAGAAGCATCGGACGAGCTTGCTTTGTTTC 1393
Query 1574 TAGCTAGAGCTGTGATCGATGATGTCTTGGCTCCGCTTAATCTCGAAGAGATCTCAAACA 1633
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1394 TAGCTAGAGCTGTGATCGATGATGTCTTGGCTCCGCTTAATCTTGACGAGATCTCAAACA 1453
Query 1634 GCTTACCGCCAAAATCAACCGGAAGCGAAACCATCCGCTCAGCTCGGTCTCTGATATCCG 1693
||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1454 GCTTACCACCAAAATCAACCGGTTGCGAAACCATCCGCTCAGCTCGGTCACTGATATCCG 1513
Query 1694 CTCGACACGCAGGAGAAAGACTCCTGAGAAGCTGGGGTGGGGGAACGGGCTGGGCAGTGG 1753
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1514 CTCGACACGCAGGAGAAAGACTCCTGAGAAGCTGGGGTGGCGGAACTGGCTGGGCGGTGG 1573
Query 1754 AAGACGCTAAAGACAAGATCTGGAAACTTCTAGAAGAATACGAAGT-AGGAGGAGTAATA 1812
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1574 AAGACGCTAAAGACAAGATCTGGAAACTTCTAGAAGAATACGAA-TCAGGAGGAGTAATA 1632
Query 1813 TCAGAGGCTTGTCGATGCATACGCGATCTAGGAATGCCGTTTTTTAACCACGAGGTGGTT 1872
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1633 TCAGAGGCTTGTCGATGCATACGCGATCTAGGGATGCCGTTTTTTAACCATGAGGTGGTT 1692
Query 1873 AAGAAGGCTTTGGTAATGGCAATGGAGAAGAAGAACGATCGGATGCTTAATCTCTTGCAG 1932
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 AAGAAAGCTTTGGTAATGGCAATGGAGAAGAAGAACGATCGGATGCTTAATCTCTTGCAG 1752
Query 1933 GAGTGTTTTGCTGAAGGGATCATTACTACTAACCAAATGACAAAAGGGTTTGGTCGAGTC 1992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1753 GAGTGTTTTGCTGAAGGGATCATTACTACTAACCAAATGACAAAAGGGTTTGGTCGAACC 1812
Query 1993 AAAGATAGTCTTGATGACTTATCTTTGGATATTCCAAATGCAGAA-GAGAAATTTAACTC 2051
||||| ||||| |||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1813 AAAGAGAGTCTCGATGACTTATCTTTGGATATTCCAAACGC-GAAAGAGAAATTTAACTC 1871
Query 2052 GTATGTTGCGCACGCTGAAGAGAACGGTTGGCTACACCGCGATTTTGGGTGTTCTACAGA 2111
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1872 GTATGTTGCGGACGCTGAAGAGAACGGTTGGCTACACCGCGATTTTGG-TGTTCTACAGA 1930
Query 2112 TTCTTGACTGA 2122
|||||||||||
Sbjct 1931 TTCTTGACTGA 1941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88293187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5