BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48410.1
Length=1330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485200 jgi|Araly1|485200|fgenesh2_kg.5__1192__AT3G48410.1 2021 0.0
> Ahg485200 jgi|Araly1|485200|fgenesh2_kg.5__1192__AT3G48410.1
Length=1280
Score = 2021 bits (1094), Expect = 0.0
Identities = 1221/1283 (95%), Gaps = 6/1283 (0%)
Strand=Plus/Plus
Query 1 AGCTCTCAAACAAAGATATTGCTACTGCCTCACCAAATTTTCCTCCGgaaagagagtgag 60
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCTCTCAAAAAAAGATATTGCCACTGCCTCACCAAATTTTCCTCCGGAAAGAGAGTGAG 60
Query 61 aaaa-tttccaagagaaagaggagagagaatggctggagaagaaatagagagggagaaga 119
|||| ||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||
Sbjct 61 AAAATTTTCCAAGAGAAAGA-GAGAGAGAATGGCTGGAGAAAAAACAGAGAGGGGGAAGA 119
Query 120 aaTCTGCAGCATCTGCAAGAACTCACACCAGAAACAACACTCAACAAAGTTCTTCTTCTG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATCTGCAGCATCTGCAAGAACTCACACCAGAAACAACACTCAACAAAGTTCTTCTTCTG 179
Query 180 GTTATCTGAAAACGCTTCTCCTGGTAACGTTCGTCGGAGTTTTAGCATGGGTTTATCAAA 239
|||||||||||||| |||| |||||||||||||| |||| |||||||||| |||||||||
Sbjct 180 GTTATCTGAAAACGATTCTTCTGGTAACGTTCGTTGGAGCTTTAGCATGGATTTATCAAA 239
Query 240 CAATCCAACCACCACCCGCCAAAATCGTCGGCTCTCCCGGTGGACCCACCGTGACATCAC 299
|||||||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 240 CAATCCAACCACCACCGGCCAAACCCGTCGGCTCTCCCGGCGGAGCCACCGTGACATCAC 299
Query 300 CGAGGATCAAACTGAGAGACGGAAGACATCTGGCTTACACAGAATTCGGAATCCCTAGAG 359
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CGAGGATCAAATTGAGAGACGGAAGACATCTGGCTTACATAGAATTCGGAATCCCTAGAG 359
Query 360 ACGAAGCCAAGTTCAAGATCATAAACATCCACGGCTTCGATTCTTGTATGCGAGACTCGC 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 ACGAAGCCAAGTTCAAGATCATATACATCCACGGCTTCGATTCTTGTATGCGAGACTCGC 419
Query 420 ATTTCGCCAATTTCTTATCGCCGGCTCTTGTGGAGGAATTGAGGATATACATTGTGTCTT 479
| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 ACTTCGCCAGTTTCTTATCGCCGGCTCTTGTGGAGGAATTGAGGATACACATTGTGTCTT 479
Query 480 TTGATCGTCCTGGTTATGGAGAGAGTGATCCTAACCTGAATGGGTCACCAAGAAGCATAG 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGACCGTCCTGGTTATGGAGAGAGTGATCCTAACCTGAATGGGTCACCAAGAAGCATAG 539
Query 540 CATTGGATATAGAAGAGCTTGCTGATGGGTTAGGACTAGGACCTCAGTTCTATCTCTTTG 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 CATTGGATATAGAAGAGCTTGCTGATGGGTTAGGACTAGGACCTAAGTTCTATCTCTTTG 599
Query 600 GT-TACTCCATGGGTGGTGAAATTACATGGGCATGCCTTAACTACATTCCTCACAGGTTA 658
|| | |||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 600 GTCT-TTCCATGGGTGGTGAAATTACATGGGCGTGTCTTAACTACATTCCTCACAGGATA 658
Query 659 GCAGGAGCTGCCCTTGTAGCTCCAGCGATTAACTATTGGTGGAGAAACTTACCGGGAGAT 718
||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 659 GCAGGAGCTGCGCTTGTTGCTCCGGCGATTAACTACTGGTGGAGAAACTTACCGGGAGAC 718
Query 719 TTAACAAGAGAAGCTTTCTCTCTTATGCATCCTGCAGATCAATGGTCACTTCGAGTAGCT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATAACAAGAGAAGCTTTCTCTCTTATGCATCCTGCAGATCAATGGTCACTTCGAGTAGCT 778
Query 779 CATTATGCTCCTTGGCTTACATATTGGTGGAACACTCAGAAATGGTTCCCAATCTCCAAT 838
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 CATTATGCTCCTTGGCTTACATATTGGTGGAACACTCAGAAATGGTTCCCGGTCTCCAAT 838
Query 839 GTGATTGCCGGTAATCCCATTATTTTCTCACGTCAGGACATGGAGATCTTGTCGAAGCTC 898
|||||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct 839 GTGATTGCGGGTAATCCCATTATTTTCTCCCGGCAGGACATGGAGATTTTGTCTAAGCTC 898
Query 899 GGATTCGTCAATCCAAATCGGGCATACATAAGACAACAAGGTGAATATGTAAGCTTACAC 958
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 899 GGATTCGTCAATCCAAATCGGGCATACATAAGACAACAAGGTGAATACGTAAGCCTACAC 958
Query 959 CGAGATTTGAATGTCGCATTTTCAAGCTGGGAGTTTGATCCGTTAGACCTTCAAGATCCG 1018
|||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 959 CGAGATTTGAATGTCGGATTTTCAAGCTGGGAATTTGATCCGATAGACCTTCAAGATCCA 1018
Query 1019 TTCCCGAACAACAATGGCTCAGTTCACGTATGGAATGGCGATGAGGATAAGTTTGTGCCA 1078
||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 1019 TTCCCGAACAACAATTGCTCGGTTCACCTATGGAACGGCGATGAGGATAAGTTTGTGCCA 1078
Query 1079 GTAAAGCTTCAACGGTATGTCGCGTCAAAGCTGCCATGGATTCGTTACCATGAAATATCT 1138
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTAAAGCTTCAACGTTATATCGCGTCAAAGCTGCCATGGATTCGTTACCATGAAATATCT 1138
Query 1139 GGATCAGGACATTTTGT-ACCATTTGTGGAAGGTATGACTGATAAGATCATCAAGTCACT 1197
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGATCAGGACATTT-GTTACCATTTGTGGAAGGTATGACTGATAAGATCATCAAGTCACT 1197
Query 1198 TTTGGTTGGGGAAGAAGATGTAAGTGAGAGTAGAGAAGCCTCTGTTTAAGTCAATGTGGT 1257
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1198 TTTGGTTGGGGAAGAAAATGTAAGTGAGAGTAGAGAAGCCTCTGTTTAAGTTAATGTGGT 1257
Query 1258 TTTTAAGAATAATTAATTGCTTG 1280
||||||| ||||||| |||||||
Sbjct 1258 TTTTAAGGATAATTAGTTGCTTG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49750406685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5