BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48440.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937601 jgi|Araly1|937601|scaffold_501792.1 2047 0.0
> Ahg937601 jgi|Araly1|937601|scaffold_501792.1
Length=1385
Score = 2047 bits (1108), Expect = 0.0
Identities = 1281/1360 (94%), Gaps = 29/1360 (2%)
Strand=Plus/Plus
Query 1 ATGGTCAATTCCGAAGAAATTGCAGATGGGTTTGAGCCAAAACCTGTTTCTCGATCTTAT 60
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 22 ATGGTCAATTCCGAAGAAACTGCAGATGGGTTTGAGCCAAAACCTGTTTCTCAATCCTAT 81
Query 61 TCTGGTGATTCATCT-CATGATCGTTCTCTTTCCGATCTCAATCACGCAGCGGAGGACTT 119
||||||||||||||| | |||||| |||||||| ||||||||| |||||||| |||||||
Sbjct 82 TCTGGTGATTCATCTGC-TGATCGATCTCTTTCTGATCTCAATAACGCAGCGAAGGACTT 140
Query 120 GAGTGATAAGCTTAAGAATGTGGGTTTGAATGAAGTTACGAAAGAGCAGAGTGAGAAGAT 179
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 141 GAGTGATAAGCTTAAGAATGTGGGTTTGGATGAAGTTACGAAAGAGAAGAGTGAGACGAT 200
Query 180 GATGAGTGTCTCTGAGAGTAATGGAGGTTTAGATTCGAATGCAGTAGTCACCATCAATCA 239
||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 201 TATGAGTGTCGCTGAGAGTTATGGAGGTTTAGATTCGAATGTAGTAGTCACCAGCAAT-- 258
Query 240 GgaagaagaagaagaagaagaagaCAGAGATGGTTATGGTTATGGTGATGGTTGGAGCGA 299
| || ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||
Sbjct 259 -G-AG--GAAGAAGAAGAAG-A-ACA-AGATGGTTATGATTATGGTGATGGTTGGAGCGA 311
Query 300 GAAC--GA--GAG-T--GAGAA--TGTGTATCCAGTGAGGCCAGGAGCAGAGGATTGTTC 350
|||| || ||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 312 GAACGAGAGTGAGATGAGAGAAGTTGTGTATCCAGTGAGGCCAGGAGCAGAGGATTGTTC 371
Query 351 TTTTTATATGAGAACAGGGAGCTGCAAATTCGGATCCAGTTGCAAATTCAATCATCCTCT 410
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 372 TTTTTATATGAGAACAGGGAGCTGCAAATTCGGATCTAGCTGCAAATTCAATCATCCTCT 431
Query 411 TGCCAGAAAATTCCAAATTGCTAGGGATAATAAAGTAAGAGAAAAGGAAGATGATGGTGG 470
|||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 432 TGCCAGAAAAATCCAAATTGCTAGGGATAATAAAGTGAGAGAAAAGGAAGAGGATGGTGG 491
Query 471 TAAATTGGGGCTGATAGATTGCAAGTATTACTTTAGGACTGGAGGGTGTAAGTATGGAGA 530
||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 492 TAAATTGGGACTGATTGATTGCAAGTATTACTTTAGGACTGGAGGGTGCAAATATGGAGA 551
Query 531 AACTTGTAGATTCAACCATACCATACCAAAGTCTGGTCTGGCCTCAGCACCCGAGCTTAA 590
|| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 552 AATTTGTAGATTCAACCATACCTTACCAAAGTCTTGTCTGGCCTCACCACCCGAGCTTAA 611
Query 591 CTTCCTCGGCCTTCCTCTCAGACCGGGAGAAGTAGAATGCCCTTACTACATGCGCAATGG 650
|||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 612 CTTCCTTGGCCTTCCTATCAGACCGGGAGAAGTAGAATGCCCTTATTACATGCGCAATGG 671
Query 651 CTCCTGCAAATAT-GGAGCTGAGTGCAAATTCAATCATCCTGATCCTACAACCATCGGAG 709
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 672 CTCCTGCAAAT-TCGGAGCTGAGTGCAAATTTAATCATCCTGATCCTACAACCATCGGAG 730
Query 710 GAACTGACTCCCCATCATTTCGTGGTAATAATGGTGTATCCATTGGTACATTTTCTCCAA 769
|||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 731 GAACTGACTCCCTATCATTTCATGGTAATAATGATGTATCCATTGGAACATTTTCTCCAA 790
Query 770 AGGCTACATTCCAAGCAAGTTCAACTTCCTGGTCTTCACCAAGGCATGTGAATGGTACAT 829
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 791 AGTCTACATTCCAAGCAAGTTCAACTTCCTGGACTTCACCAAGGCATGTGAATGGTACAT 850
Query 830 CTCCTTTTATTCCAGTCATGCTGTCACAAACTCATGGGGTTACATCTCAAAATCCAGAGT 889
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| || |
Sbjct 851 CTCCTTTTATTCCAGTCATGCTGTCACAAACTCATGGAGTTCCATCTCAAACTCCGGAAT 910
Query 890 GGAATGGCTATCAGGCTTCTGTGTATTCATCTGAAAGGGGTGTGTTTTCTCCTTCCACCA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GGAATGGCTATCAGGCTTCTGTGTATTCATCTGAAAGGGGTGTGTTTTCTCCTTCCACCA 970
Query 950 CATACCTAATGAACAATTCATCAGCTGAAACAAGTATGTTGCTGTCACAATACCGACATC 1009
||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 971 CATACCTTATGAACAATTTATCAGCTGAAACAAGTATG-T--TGTCACAATACCGACATC 1027
Query 1010 AAATGCCTGCTGAAGAATTTCCAGAACGTCCAGACCAACCTGAGTGCAGTTATTATATGA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AAATGCCTGCTGAAGAATTTCCAGAACGTCCAGACCAACCTGAGTGCAGTTATTATATGA 1087
Query 1070 AAACTGGGGACTGCAAGTTCAAATTCAATTGCAAATACCACCATCCTAAGAATCG-TCTG 1128
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1088 AAACTGGGGACTGTAAGTTCAAATTCAATTGCAAATACCACCATCCTAAGAATCGAT-TG 1146
Query 1129 CCGAAGCTGCCTCCTTATGCTCTCAATGACAAGGGTTTACCCCTTAGACCTGATCAAAAC 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 CCGAAGCTGCCTCCTTATGCTCTCAATGACAAGGGTTTACCCCTTAGACCTGATCAAAAC 1206
Query 1189 ATTTGCACATATTACAGTCGATACGGCATCTGCAAATTCGGTCCAGCTTGTAGATTTGAC 1248
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1207 ATCTGCACATATTACAGTCGGTACGGCATCTGCAAATTCGGTCCAGCTTGTAGATTCGAC 1266
Query 1249 CATTCCGTCCAGCC-TCCATATTCGACAGAAAGCTCCCAGGCCATTGTAGAACCTCCTCA 1307
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 CATTCCGTCCAGCCGTC-ATATTCGACAGAAAGCTCCCAGGCCATTGTAGAACCTCCTCA 1325
Query 1308 GGTCAGTGCAAATGGGAATGAAAGTGACGGTTGGAATTGA 1347
||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 GGTCAGTGCAAATGGGAATGAAAGTGACGGTTGGAATTGA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5