BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48450.1
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485205 jgi|Araly1|485205|fgenesh2_kg.5__1197__AT3G48450.1 756 0.0
> Ahg485205 jgi|Araly1|485205|fgenesh2_kg.5__1197__AT3G48450.1
Length=563
Score = 756 bits (409), Expect = 0.0
Identities = 526/578 (91%), Gaps = 26/578 (4%)
Strand=Plus/Plus
Query 4 CTCTCTTTTTCCCAGATCATCATCATCCTCTCTCTTTCTCTAGATTTTGGATATTTCCTC 63
||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 1 CTCTCCTTTTCCCAGATCATCATCAAGCTCTCTATTTCTCTAGATTTTGGACATTTCCTC 60
Query 64 GTATCGGATTCGAAATCCTCTGTTTCTAATTCCAACAATGGCAACGGGAAATAGAGCGAG 123
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 61 GTATCGTATTCGAAATCCTTTG-TTCTAATTCCAACAATGGCAACGGGAAATAGAGCGAG 119
Query 124 ACCATTGCCAAAATTTGGGGAATGGGATGCGACTAATCCTGGCTCGGCTGAAGGATTCAC 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 ACCATTGCCAAAATTTGGGGAATGGGATGCGACTAATCCTGCCTCGGCTGAAGGATTCAC 179
Query 184 TGTCATTTTCAATAAAGCTCGCGATGACAAGAAGACGATGAAAACCGCTGTCGCAGGACC 243
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 180 TGTCATTTTCAATAAAGCTCGTGATGACAAGAAGACCAAGAAAACCGCTGTCGCAGGACC 239
Query 244 TGAGAGTATTGTTTCACCTCCAAGAAATGAAGAACCTCCTAAA-AACAACAACAACCATC 302
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 240 TGAGAGTATTGTTTCACCTCCAAGAAATGAAGAACCTCC-AAAGAACAACAACAACCATC 298
Query 303 ATCACAACCATCACACCCGTCATTCCCAAACCCCAAGATCAAAGAAGAAATGGCTTTGTT 362
| || | || | | | | | ||||||||||| ||||||||||||||||||||||||
Sbjct 299 A-CA-A-CCGT-A-A----T--T-CCCAAACCCCACGATCAAAGAAGAAATGGCTTTGTT 346
Query 363 TTCGTTAACTCTGGTATTGGCTCTGTTCTGAGAAAACCCGACGACAAGCAAGCAGAATCG 422
|||||||||||||||| |||||||||||||| |||||| |||| |||||||||||||||
Sbjct 347 TTCGTTAACTCTGGTAGTGGCTCTGTTCTGAAAAAACCA-ACGATAAGCAAGCAGAATCG 405
Query 423 TGGAGC-GAGTAATCTCCAACAGATTATAGCGACCAAACCAGTGATCATCTAAGATGTTG 481
| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 406 CGTAGCCGAGTAATCTCCAACAGATTATAGCGACCAAACCTGTGATCGTCTAAGATGTTG 465
Query 482 TTGCAAACTT--CT-CTTCTTCTTATT---GCTCGTTGAGTTTCT-TTCTC-T-TTTGTT 532
|||||||||| || ||||||||| || ||| ||||||||||| || || | ||||||
Sbjct 466 TTGCAAACTTGTCTTCTTCTTCTTCTTCTTGCTAGTTGAGTTTCTCTTTTCCTCTTTGTT 525
Query 533 TTGGACACATTTGGGTATATGAATATACGTTTTTCTTG 570
|||| |||||||||||||||||||||||||| ||||||
Sbjct 526 TTGGCCACATTTGGGTATATGAATATACGTTATTCTTG 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20947418361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5