BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G48480.1

Length=1187
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg323445 jgi|Araly1|323445|fgenesh1_pm.C_scaffold_5000989           401    5e-111


> Ahg323445 jgi|Araly1|323445|fgenesh1_pm.C_scaffold_5000989
Length=510

 Score =  401 bits (217),  Expect = 5e-111
 Identities = 233/241 (97%), Gaps = 0/241 (0%)
 Strand=Plus/Plus

Query  63   ATGTCAAGAAGACGAAGTAATCGTGTTCGAAATACTAATAGTAAATACGTCAGCAGTCCT  122
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1    ATGTCAAGAAGACGAAGTAATCGTGTTCGAAATACTAATAGTAAATACGTCACCAGTCCT  60

Query  123  GCTCGTGTTACTATTATTGATGATTGTGAGGAAGATGAGTATTTACACCACAGGACGTGT  182
            | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  61   GTTCGTGTTACTATTATTGATGATTGTGAGGAAGATGAGTTTTTACACCACAGGACGTGT  120

Query  183  TGGAAGCATATTGCTGCTGCCTTGAGTAAGTGTGGTTCGAAACCGAAGCGAACCAAGGAG  242
            ||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct  121  TGGAAGCATATTGCTGCTGTCTTGAATAAGTGTGGTTCGAAACCGAAGCGAGCCAAGGAG  180

Query  243  TTGGAGATATTCAAATTGACTGCTCCTTGTTTCTATGACGAATGCACACGCCGTGGGAGG  302
            |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTGGAGATGTTCAAATTGAGTGCTCCTTGTTTCTATGACGAATGCACACGCCGTGGGAGG  240

Query  303  T  303
            |
Sbjct  241  T  241


 Score =  374 bits (202),  Expect = 1e-102
 Identities = 249/272 (92%), Gaps = 2/272 (1%)
 Strand=Plus/Plus

Query  689  GTTTGTGTTGGACATATACAGAGCTGAGGGAAGAACTGAAGACTCAAGTCTGGTTGATGA  748
            |||||||||||||||||| ||||| |||||||||||||||||| |||| |||||||||||
Sbjct  240  GTTTGTGTTGGACATATATAGAGCCGAGGGAAGAACTGAAGACCCAAGACTGGTTGATGA  299

Query  749  AATCCCGTTTTATGTGCCAATGGTTCCACAGCAAACAAATGATGTGGAATGTGGAAGCTT  808
            |||||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct  300  AATCCCGTTCCATGTGCCAGTGGTTCCACAGCAGACAAATGATGTGGAATGTGGAAGCTT  359

Query  809  TGTCCTCTACTACATTCATCGGTTCATAGAAGACGCTCCTGAGAACTTCAACGTCGAAGA  868
            ||| |||||||||||||| |||||||||||||| || ||||||||||||| |||||| ||
Sbjct  360  TGTTCTCTACTACATTCAGCGGTTCATAGAAGATGCCCCTGAGAACTTCAGCGTCGATGA  419

Query  869  TATGCCGTATTTTCTGAAAGAGGACTGGTTTAGTCATAAAGACTTGGAAAAGTTCTGTGA  928
            |||||| |||||| |||||||||| |||||||| |||||||| |||||| ||||||||||
Sbjct  420  TATGCCATATTTTATGAAAGAGGATTGGTTTAGCCATAAAGAGTTGGAAGAGTTCTGTGA  479

Query  929  CGA-GCTTCATTCTTTGGGAACTATTCATTGA  959
             || |||||||||||||||||| |||||||||
Sbjct  480  -GACGCTTCATTCTTTGGGAACCATTCATTGA  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44298829554


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5