BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48490.1
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897698 jgi|Araly1|897698|Al_scaffold_0005_1664 472 2e-132
Ahg897722 jgi|Araly1|897722|Al_scaffold_0005_1688 396 1e-109
> Ahg897698 jgi|Araly1|897698|Al_scaffold_0005_1664
Length=387
Score = 472 bits (255), Expect = 2e-132
Identities = 350/391 (90%), Gaps = 25/391 (6%)
Strand=Plus/Plus
Query 50 ATGTTTGGGAGGCTGAGACCACCGCCGTCGCCGCCGGATTGTCTGGAGAGATATCCGGCG 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTTGGGAGGCTGAGACCACCGCCGTCGCCGCCGGATTGTCTGGAGAGATATCCGGCG 60
Query 110 AAGATCATCAAAGACGATCCTCTCTCCGTCTACGAGTCAACACTGTTGAAACTTAAGCAA 169
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AAGATCATCAAAGACGATCCTCTCTCCGTCTACGAGTCAACACTGTTGAAGCTTAAGCAA 120
Query 170 GGGTCAACAAGACAGGACACTACTTCATCAGAAACAGAAGGTGAAGAGAATCTGTCATCA 229
||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 121 GGGTCAACAAGACTGGACACTACTTCATCAGAAACAGAAGGTGGAGAGAATCTGCCATCA 180
Query 230 ACATCATCGTCTCATGTCTTGTCTTCGGATACACAATTAG--------GA-G--ACACT- 277
|| | ||||||||||||| ||||| ||||||||| || || | || ||
Sbjct 181 TCA-C--CGTCTCATGTCTTCTCTTCAGATACACAAGGAGACACTCATGATGTGACTCTG 237
Query 278 --CA-TG------ATGCAATGGCTATAGACTCGTGTGAAAGCTCGAAACAGATAAAGAGC 328
|| || ||||||||||||||||||||||||||| | |||||||| |||||| |
Sbjct 238 TGCAATGGCTCTGATGCAATGGCTATAGACTCGTGTGAAAACACGAAACAGCTAAAGAAC 297
Query 329 AAGAACCCATCAGTACTATCCATGTTTAGCAAGTACAAGAATCAAGCTCAAGCACGAAAC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 298 AAGAACCCATCAGTACTATCCATGTTTAGCAAGTACAAGAATCAAGCTCAAGCGCGAAAC 357
Query 389 ATGAAGACAGAGACTCAGGAATGATTTGTAA 419
||||||||||||||||| ||||||||||||
Sbjct 358 ATGAAGACAGAGACTCAT-AATGATTTGTAA 387
> Ahg897722 jgi|Araly1|897722|Al_scaffold_0005_1688
Length=327
Score = 396 bits (214), Expect = 1e-109
Identities = 287/322 (89%), Gaps = 5/322 (2%)
Strand=Plus/Plus
Query 83 CCGGATTGTCTGGAGAGATATCCGGCGAAGATCATCAAAGACGATCCTCTCTCCGTCTAC 142
||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 7 CCGCATTGTGTGGAGAGATATCCGGCGAAGATCATAAAAGACGATCCTCTCTCCGTCCAC 66
Query 143 GAGTCAACACTGTTGAAACTTAAGCAAGGGTCAACAAGACAGGACACTACTTCATCAGAA 202
| ||||| ||| |||| ||||||||||||||||| |||| || | |||||||||||
Sbjct 67 TATTCAACTCTGCTGAAGCTTAAGCAAGGGTCAACGAGACTGG--A-GGCTTCATCAGAA 123
Query 203 ACAGAAGGTGAAGAGAATCTGTCATCAACATCATCGTCTCATGTCTTGTCTTCGGATACA 262
|| || ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 124 ACTGAGGGTGAGGAGAATCTGTCATCATCATCATCGTCTCATGTCTTCTCTTCGGATACA 183
Query 263 CAATTAGGAGACACTCATGATGCAATGGCTATAGACTCGTGTGAAAGCTCGAAACAGATA 322
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct 184 CAATTAGGAGACACTCATGATGCGATGGCTATAGACTCGTGTGAAAGCTTGAAACAGCTA 243
Query 323 AAGAGCAAGAACCCATCAGTACTATCCATGTTTAGCAAGTACAAGAATCAAGCTCAAGCA 382
|||| |||||||||||| ||||||||||||||| || ||||||||||| ||||||||||
Sbjct 244 AAGAACAAGAACCCATCTGTACTATCCATGTTTTCCAGGTACAAGAATCTAGCTCAAGCA 303
Query 383 CGAAACATGAAGA-CAGAGACT 403
| |||| | || | ||||||||
Sbjct 304 CAAAAC-TCAACAACAGAGACT 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001483322
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5