BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48500.2
Length=2345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937609 jgi|Araly1|937609|scaffold_501800.1 1751 0.0
Ahg941046 jgi|Araly1|941046|scaffold_601590.1 219 1e-55
> Ahg937609 jgi|Araly1|937609|scaffold_501800.1
Length=2068
Score = 1751 bits (948), Expect = 0.0
Identities = 1028/1065 (97%), Gaps = 11/1065 (1%)
Strand=Plus/Plus
Query 1105 TCA-GGCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGCGCTTCGTCCATC 1163
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1003 TCACGGCAAAAAGAGATCCATACCGATTTCGGTTTCCCTTGGAGTTGCGTTTCGTCCATC 1062
Query 1164 CTAACATAGATCACATGATATTTAATAAATTTGACTTCCCACCAATATTCCATCGTGATG 1223
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CCAACATAGATCACATGATCTTTAATAAATTTGACTTCCCACCAATATTCCATCGTGATG 1122
Query 1224 GGGATACTAATCCAGATGAGATACGGCGAGATTGTGGAAGACCTCCTGAACCTAGAAAAG 1283
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1123 GGGATACTAATCCCGATGAAATACGGCGAGATTGTGGAAGACCTCCAGAACCTAGAAAAG 1182
Query 1284 ATCCAGGATCAAAGCCAGAGGAGGAAGGGCTGCTCTCTGATCACCCTTATGTCGACAAGT 1343
||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1183 ATCCAGGATCAAAACCAGAGGAGGAAGGGCTGTTCTCTGATCACCCGTATGTCGACAAGT 1242
Query 1344 TGTGGCAGATACATGTAGCTGAGCAAATGATTTTGGGTGATTACGAAGCTAACCCTGCAA 1403
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1243 TGTGGCAGATACATGTAGCTGAGCAAATGATTTTGGATGATTACGAAGCTAACCCTGGAA 1302
Query 1404 AATACGAAGGCAAAAAGCTATCAGAATTATCTGATGATGAAGACTTTGATGAACAAAAGG 1463
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1303 AATACAAAGGCAAAAAGCTATCAGAATTATCTGATGATGAAGGCTTTGATGAACAAAAGG 1362
Query 1464 ATATCGAGTATGGCGAAGCTTATTATAAGAAAACCAAATTGCCAAAAGTGATTCTGAAAA 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 ATATCGAGTATGGCGAAGCTTATTATAAGAAAACCAAATTGCCAAAAGTGATTCTGAAAA 1422
Query 1524 CCAGTGTCAAGGAACTTGACTTAGAGGCTGCATTGACCGAGCGCCAGCACCACAATAAAC 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 CCAGTGTCAAGGAACTTGACTTAGAGGCTGCATTGACCGAGCGCCAGCACCACAATAAAC 1482
Query 1584 TAATGATGGAAGCTAAAGCAAGAGGAGAAGGATACAAAATTGACAAGCTCAGACGAAATA 1643
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1483 TAATGATGGAAGCTAAAGCAAGAGGAGAAGGATACAAAATTGACAAGCTAAGACGAAATA 1542
Query 1644 TAGAGATGGACGAGTATGATTTCTTACACTGGCGCCGATCTTTGGAGGAAAGAGAAGCAT 1703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1543 TAGAGATGGACGAGTATGATTTCTTACACTGGCGCCGATCTTTGGAGGAAAGAGAAGCAT 1602
Query 1704 TGCTCAGAGATATCAGCTCTCGGCAAGCACTTGGTTTACCATTGGAGGAACCAGGGAGGT 1763
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1603 TGCTCAGAGATATCAGCTCTCGTCAAGCACTTGGTTTACCATTGGAGGAACCAGGGAGGT 1662
Query 1764 ACAAGCCAGGAAGCTTCTTTGGGAAAGACCAGTACGATCCAACAAGTGCATTATATCAGT 1823
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1663 ATAAGCCAGGAAGCTTCTTTGGGAAAGACCAGTACGATCCAACAAGTGCACTATATCAGT 1722
Query 1824 ATGACTACTGGGGAGAGCCAAAGAACTCAGAGATTAGCAAGCAAGAGAGAATGAAGGATG 1883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 ATGACTACTGGGGAGAGCCAAAGAACTCAGAGATTAGCAAGCAAGAGAGAATGAAGGATG 1782
Query 1884 CACACAACAAATCCATTGTTGGGAAAGGCAATGTGTGGTATGACATGTCTTACGATGATG 1943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 CACACAACAAATCCATTGTTGGGAAAGGCAATGTGTGGTATGACATGTCTTACGATGATG 1842
Query 1944 CGATTAAGCAGACAATAGAGAaaagaaaagaagggtctaccttggcgagtcaagaagaag 2003
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 CCATTAAACAGAAAATAGAGAAAAGAAAAGAAGGGTCTACCTTGGCGAGTCAAGAAGAAG 1902
Query 2004 aaacagagtcagaggaagaagaaga-g--GATGACGATGAT--T--TT--GACGATTTTG 2054
||||||||||||||||||||||||| | ||||| |||||| | || ||||||||||
Sbjct 1903 AAACAGAGTCAGAGGAAGAAGAAGACGACGATGATGATGATGATGATTTTGACGATTTTG 1962
Query 2055 ACTATAGCATTCTGAGTGATGAGAGCAGTATCGGTTACTCGGAACAGCAACCTCTTGTTA 2114
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1963 ACTACAGCATTCTGAGTGATGAGAGTAGTATCGGTTACTCAGAACAGCAACCTCTTGTTA 2022
Query 2115 ACGGTACTCAAGTCTTGACAGACTGATGTTTAAAAGGAAAGTAAA 2159
|||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2023 ACGGTACTCAAGTCTTGACAGACTGATGTTTAAACG-AAAGTAAA 2066
Score = 1568 bits (849), Expect = 0.0
Identities = 960/1011 (95%), Gaps = 18/1011 (2%)
Strand=Plus/Plus
Query 27 TGAAGA-GTGACGAATGAATCATGCAGATTTGCCAAACCAAGCTCAATTTCACTTTCCCT 85
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAAGAGGTG-CGAATGAATCATGCAGATTTGCCAAACCAAGCTCAATTTCACTTTCCCT 59
Query 86 AATCCCACAAACCCTAATTTCTGCAAACCCAAAGCTCT-T-CAATGG---TC-A---C-- 134
||||||||||||||||||||||||||||||||| |||| | | || || | |
Sbjct 60 AATCCCACAAACCCTAATTTCTGCAAACCCAAATCTCTCTCCGCCGGATTTCAATGGCTT 119
Query 135 C-GCCTCGTCGCAT-ATCCTTGCTGCCTTGTCGTGGATTCAGCTCCGATGAATTCCCAGT 192
| |||||||| || | |||| | |||||| |||||||||||||||||||||||||| ||
Sbjct 120 CAACCTCGTCGTATCA-CCTTACCGCCTTGCCGTGGATTCAGCTCCGATGAATTCCCCGT 178
Query 193 CGACGAAACCTTCCTCGAGAAATTCGGACCAAAGGACAAAGACACAGAAGATGAAGCTCG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CGACGAAACCTTCCTCGAGAAATTCGGACCAAAGGACAAAGACACAGAAGATGAAGCTCG 238
Query 253 -ACGACGTAACTGGATCGAACGTGGTTGGGCTCCATGGGAAGAGATTCTCACACCAGAAG 311
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 TA-GACGTAACTGGATCGAACGTGGTTGGGCTCCATGGGAAGAGATTCTCACACCAGAAG 297
Query 312 CTGATTTCGCTCGTAAATCTCTCAACGAAGGTGAAGAAGTTCCGCTTCAATCGCCGGAAG 371
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 298 CTGATTTCGCTCGTAAATCGCTTAACGAAGGTGAAGAAGTTCCGCTTCAATCGCCGGAAG 357
Query 372 CGATCGAAGCGTTTAAGATGCTGAGACCATCGTATAGGAAGAAGAAGATTAAGGAGATGG 431
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 CGATCGAAGCGTTTAAGATGCTGAGACCGTCGTATAGGAAGAAGAAGATTAAGGAGATGG 417
Query 432 GGATAACAGAAGACGAATGGTATGCAAAGCAATTTGAGATTAGAGGTGATAAACCACCTC 491
||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 418 GGATAACGGAAGATGAATGGTATGCTAAGCAGTTTGAGATTAGAGGTGATAAACCACCGC 477
Query 492 CTTTAGAAACATCTTGGGCTGGTCCGATGGTTCTTAGGCAAATTCCGCCGCGTGATTGGC 551
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTTTAGAAACATCGTGGGCTGGTCCGATGGTTCTTAGGCAAATTCCGCCGCGTGATTGGC 537
Query 552 CTCCCAGAGGTTGGGAAGTTGATAGGAAGGAGCTGGAGTTTATTAGGGAAGCTCATAAGT 611
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTCCGAGAGGTTGGGAAGTTGATAGGAAGGAGCTGGAGTTTATTAGGGAAGCTCATAAGT 597
Query 612 TAATGGCTGAAAGAGTTTGGCTTGAGGATTTGGATAAGGATTTGAGAGTTGGTGAAGATG 671
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 598 TAATGGCTGAAAGAGTTTGGCTTGAGGATTTGGATAAGGATTTGAGAACTGGAGAAGATG 657
Query 672 CTACTGTTGATAAGATGTGTTTGGAGAGGTTTAAGGTTTTCTTGAAACAATACAAGGAAT 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 CTACTGTTGATAAGATGTGTTTGGAGAGGTTTAAGGTTTTCTTGAAACAATACAATGAAT 717
Query 732 GGGTTGAAGATAATAAAGATAGGTTGGAGGAAGAATCTTACAAGCTCGATCAGGATTTTT 791
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 718 GGGTTGAAGCTAATAAAGATAGGTTGGAGGAAGAATCTTACAAGCACGATCAGGATTTTT 777
Query 792 ATCCGGGTAGGAGGAAAAGAGGGAAGGATTACGAAGATGGGATGTATGAGCTTCCCTTTT 851
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 778 ATCCGGGTAGAAGGAAAAGAGGGAAGGATTACGAAGACGGGATGTATGAGCTTCCCTTTT 837
Query 852 ACTATCCAGGGATGGTTTGTGAAGGCACAGTTACCACTTTACATCTGTATCAGGGAGCGT 911
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 838 ACTATCCAGGGATGATTTGTGAAGGCACAGTTACCACTTTACATCTGTATCAGGGTGCAT 897
Query 912 TTGTTGACATTGGAGGTGTTCATGAAGGATGGGTACCTATAAAAGGTAATGACTGGTTTT 971
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 898 TTGTTGACATTGGAGGTGTTCATGAAGGGTGGGTACCTATAAAAGGTAATGACTGGTTTT 957
Query 972 GGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGG 1022
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 GGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAGATCACGG 1008
> Ahg941046 jgi|Araly1|941046|scaffold_601590.1
Length=323
Score = 219 bits (118), Expect = 1e-55
Identities = 157/176 (89%), Gaps = 2/176 (1%)
Strand=Plus/Plus
Query 1854 AGATTAGCA-AGCAAGAGAGAATGAAGGATGCACACAACAAATCCATTGTTGGGAAAGGC 1912
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AGATTAGCACA-CAAGAGAGAATGAAGGATGCACACAACAAATCCATTGTTGGGAAAGGC 60
Query 1913 AATGTGTGGTATGACATGTCTTACGATGATGCGATTAAGCAGACAATAGAGAaaagaaaa 1972
|| ||||||||||| |||||||| |||||||| |||||||||||| |||||||| |||||
Sbjct 61 AACGTGTGGTATGATATGTCTTATGATGATGCTATTAAGCAGACATTAGAGAAAGGAAAA 120
Query 1973 gaagggtctaccttggcgagtcaagaagaagaaacagagtcagaggaagaagaaga 2028
| | | ||| |||||||| ||||||||| ||||||||||| || ||||| ||||
Sbjct 121 GTTGAGCCTAACTTGGCGACTCAAGAAGACGAAACAGAGTCTGAAAAAGAAAAAGA 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88331278155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5