BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48510.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485209 jgi|Araly1|485209|fgenesh2_kg.5__1201__AT3G48510.1 1541 0.0
> Ahg485209 jgi|Araly1|485209|fgenesh2_kg.5__1201__AT3G48510.1
Length=1130
Score = 1541 bits (834), Expect = 0.0
Identities = 943/995 (95%), Gaps = 9/995 (1%)
Strand=Plus/Plus
Query 5 CTCAGCTCAAGTAAAGC-TTTTACCTAATTCTCAAACATTCTTTACACAAAAATATCAAG 63
|||||| |||||||||| ||||| |||||||||||||||||| ||||||||||| |||||
Sbjct 1 CTCAGCCCAAGTAAAGCTTTTTAGCTAATTCTCAAACATTCTATACACAAAAATCTCAAG 60
Query 64 AGTGATATAGATAGCGAGAAAAAATGGACGGTAGGGGAGGGTGTTGCATAGCTAGGTACG 123
|||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGTG--ATAGATTGAGAG-AAAAATGGACGGTAGGGGAGGGTGTTGCATAGCTAGGTACG 117
Query 124 CCATTGGCTCTGGACCGTACGATCTTTCCAAAGCAGATCGCATCATGCTTCGATTTCGTC 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 118 CCATTGGCTCTGGACCGTACGATCTTTCCAAAGCAGATCGTATCATGCTTCGATTTCGTC 177
Query 184 CCATTGCTCCTAAACCGGCCAGCCCCGGCGGAGTAAATCCCGTATCCAGCGGAGATAGCG 243
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CCATCGCTCCTAAACCGGCCAGCCCCGGCGGAGTAAATCCCGTATCCAGCGGAGATAGCG 237
Query 244 GCGGCGGAAGCTCCGACGTTTCCTTTAGATCAGCTAGTAGAAGAAAGAGGAAATGTCATC 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 238 GCGGCGGAAGCTCCGACGTTTCCTTTAGATCAGCTGGTAGAAGAAAGAGGAAATGTCATC 297
Query 304 AGCTGAAGGAGAATGGTGGTAACGCCAAGAGGTGCACCCGGCGGAAGACGTCGGATAAAC 363
||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct 298 AGCAGAAGGAGAATGGTGGTAACGCCAAGAGGTGCACAAGGCGGAGGACATCGGATAAAC 357
Query 364 CCGTCGTTCACGGCAGTGCTAATGCGGTGACTCTTTCTCTATTACCGGAGAAACCTATAG 423
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 358 CCGTCGTTCACGGCGGCGCTAATGCGGTGACTCTTTCTCTGTTACCGGAGAAACCTATAG 417
Query 424 ATCTTAAGGCGGCGGTGGAGAAGCAGAAGCGGCAGGGTCCGTTATGGTTGAGTTTCAAAG 483
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 418 ATCTGAAGGCGGCGGTGGAGAAGCAGAAGCGGCAGGGTCCGTTATGGTTGAGTTTCAGCG 477
Query 484 ACGGCGGAGGGATGCTCACACCGGCTTATCAGACACCGGAGATTGTGCAGAGGACGGTGG 543
||||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||
Sbjct 478 ACGGCGGAGGGATGCTCACGCCGGCTTATCAGAAACCGGAGGTTGTGCGGAGGACGGTGG 537
Query 544 TGATTTCGTCGTGTATGACGGTGGAGCGTGTAACGGACGCTTGGATTGACGGTTACGGTT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGATTTCGTCGTGTATGACGGTGGAGCGTGTAACGGACGCTTGGATTGACGGTTACGGTT 597
Query 604 TAGGGAGGTCAGATGAAGAAAGGAAGATGAATCTTGTGAGAGACACGTGTCCTGGTTTCA 663
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGGGGAGGTCCGATGAAGAAAGGAAGATGAATCTTGTGAGAGACACGTGTCCTGGTTTCA 657
Query 664 TATCCGACGGTTCAGGGAGAGTCACGTGGACTAATGACGCGTATCGGAAGATGGCTAGGG 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 TATCCGACGGTTCAGGGAGAGTCACGTGGACTAATGACGCGTATCGGAAGATGGCGAGGG 717
Query 724 ATATTATTCCCGTGGAAGAAGGTGCACCGGAGATAACTA-GCGGCGATAGTTTTCACGTG 782
| | ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 718 AGAATATTCCCGTGGAAGAAGGTACACCGGAGATAA-TAAGCGGCGATAGTTTTCACGTG 776
Query 783 ATCGTACGGTTGGTGATGAGGGAGAGGCCGATGCTAACGTCCCCTGGATTCACATGCAGA 842
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 777 TTCGTACGGTTGGTGATGAGGGAGAGGCCGATGCTATCGTCCCCTGGATTCACATGCCGA 836
Query 843 ATGAAACTCCAGTACACGTGTCAAAATCGTGAGAGAGGCTCAGTCACGGTGCCTTGCGAC 902
| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 837 GTAAAACTACAGTACACGTGTCAGAATCGTGAGAGAGGCTCCGTCACGGTGCCTTGCGAC 896
Query 903 GTGTGGAGAATGGACGTCGGTGGTGGTTTTGCTTGGAGGCTCGACGTTAAGGCCGCTTTG 962
|||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 GTGTGGAGAATGGACG--G-TGGTGGTTTCGCTTGGAGGCTCGACGTTAAGGCCGCTTTG 953
Query 963 TGCCTTTGACACCGTTAGATCAACTTTAGTCACTA 997
|| ||||||||| ||| |||||||| |||||||||
Sbjct 954 TGTCTTTGACACTGTTTGATCAACTATAGTCACTA 988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5