BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48520.1
Length=1694
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485210 jgi|Araly1|485210|fgenesh2_kg.5__1202__AT3G48520.1 2394 0.0
Ahg496532 jgi|Araly1|496532|fgenesh2_kg.8__2348__AT5G63450.1 915 0.0
> Ahg485210 jgi|Araly1|485210|fgenesh2_kg.5__1202__AT3G48520.1
Length=1647
Score = 2394 bits (1296), Expect = 0.0
Identities = 1537/1654 (93%), Gaps = 13/1654 (1%)
Strand=Plus/Plus
Query 47 ATGGCATTTCTTCTGAGTTTTTTGATACTAGCGTTTCTTATAACCATCATCTTCTTTTTA 106
||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGCATATCTTCTGAGTTTTGTGATACTAGCGTTTCTTATAATCATCATCTTCTTTTTA 60
Query 107 TCTTCATCTTCAACTAAAAAAGTCCAAGAAAACACCACATATGGACCACCATCGTATCCA 166
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 61 TCTTCATCTTCAACTAAAAAAGTCCAAGAAACCACCACCTATGGACCACCATCGTATCCA 120
Query 167 CTCATTGGCTCCATACTCTCTTTCAACAAAAACCGTCATCGTCTTCTTCAATGGTACACC 226
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 121 CTCATTGGCTCCATACTCTCCTTCAACAAAAACCGTCACCGTCTTCTCCAATGGTACACC 180
Query 227 GAGCTTCTCCGTCTCTCTCCGTCTCAAACCATCTTAGTTCCTCTCCTCGGCAACCGTCGC 286
|| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACTTCTCCGTATCTCTCCGTATCAAACCATCTTAGTTCCTCTCCTCGGCAACCGTCGC 240
Query 287 ACCATCATCACAACAAACCCATTAAACGTCGAGTACATTCTCAAAACAAACTTCTTT-AA 345
||||| ||||| |||||||| ||||||||| |||||||||| ||||||||| ||| ||
Sbjct 241 ACCATTGTCACAGCAAACCCAGAAAACGTCGAATACATTCTCAGAACAAACTT-TTTCAA 299
Query 346 CTTCCCTAAAGGTAAACCTTTTACTGATCTTCTTGGTGATCTTCTCGGTGGAGGCATATT 405
|||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||
Sbjct 300 CTTCCCTAAAGGTAAACCTTTTACCGATCTTCTTGGTGATCTCCTCGGCGGAGGCATTTT 359
Query 406 CAATGTCGACGGTCACTCATGGAGCTCGCAGCGCAAACTCGCTAGCCACGAGTTCTCCAC 465
||| ||||||||||||||||||||||| || || ||||||||||||||||||||||| ||
Sbjct 360 CAACGTCGACGGTCACTCATGGAGCTCACAACGTAAACTCGCTAGCCACGAGTTCTCGAC 419
Query 466 TCGCTCGCTTAGGAGTTTTGCTTTTGAGGTTCTTAAAGACGAAGTGGAGAACCGTCTAG- 524
||| || |||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 420 TCGTTCTCTTAGGAGTTTTGCTTTTGAGGTTCTTAAAGACGAAGTAGAAAACCGTCTCGT 479
Query 525 TCCCGGTTTTATCCACGGCGGCTGATGTTGGTACGACCGTGGATTTGCAAGATGTTTTGA 584
|||| || |||| |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 480 TCCC-GTGCTATCTGCGGCGGCTGATGTTGGCACGACCTTGGATTTGCAAGATGTTTTGA 538
Query 585 AACGTTTTGCTTTTGATGTTGTTTGTAAAGTCTCGTTGGGTTGGGATCCGGATTGTTTGG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AACGTTTTGCTTTTGATGTTGTTTGTAAAGTCTCGTTGGGTTGGGATCCGGATTGTTTGG 598
Query 645 ATCTAACCCGACCCGTTAATCCACTTGTGGAGGCTTTTGACACCGCTGCTGAGATTAGTG 704
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 599 ATCTAACCCGACCAGTTAATCCTCTTGTGGAGGCTTTTGACACCGCGGCTGAGATTAGTG 658
Query 705 CTCGCCGTGCCACGGAGCCTATTTACGCTGTTTGGAAAACGAAGCGTGTGTTGAACGTGG 764
|||||||||| || ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 659 CTCGCCGTGCTACAGAGCCGGTTTACGCTGTTTGGATGGTGAAGCGTGTGTTGAACGTGG 718
Query 765 GAAGCGAGAGGAAGCTTAGGGAAGCGATCAGGACCGTGCACGTGTTGGTCTCTGAGATTG 824
|||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 GAAGCGAGAGGAGGCTAAGAGAAGCGATCAGGACCGTACACGTGTTGGTCTCTGAGATTG 778
Query 825 TCAGAGCTAAGAAGAAGAGTCTTGAGATCGGAACCGGAGCAGAAGCAAAGCAAGATCTTT 884
|||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||
Sbjct 779 TCAGAGCTAAGAAGAAGAGTCTTGAGATCGGAACTGGAGAAGAAGCGAAGCAAGATCTTT 838
Query 885 TGTCGAGGTTTCTAGCCGCCGGCCACAACGGCGAAGCAGTGAGGGACATGGTTATTAGTT 944
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 TGTCGAGGTTTCTAGCCGCCGGCCACAACGGTGAAGCAGTGAGGGACATGGTTATTAGTT 898
Query 945 TTATCATGGCGGGAAGAGATACAACGTCAGCAGCGATGACGTGGCTGTTTTGGTTGTTGA 1004
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 TTATCATGGCGGGAAGAGATACGACGTCAGCAGCGATGACGTGGCTGTTTTGGTTGTTGA 958
Query 1005 CTGAGAACGATGACGTGGAGCGGAAGATTTTAGAAGAAGTGGACCCGTTGGTGAGTTTAG 1064
|||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 959 CTGAGAACGATGACGTGGAGAGGAAGATTTTAGAAGAAGTTGACCCGTTGGTTAGTTTAG 1018
Query 1065 GGTTAGGGTTTGAGGATTTGAAAGAGATGGCTTACACGAAGGCTTGTCTATGTGAAGCCA 1124
||||||||||||||||||| ||||||||| ||| || ||||||||||||||||||||||
Sbjct 1019 GGTTAGGGTTTGAGGATTTAAAAGAGATGAATTATACAAAGGCTTGTCTATGTGAAGCCA 1078
Query 1125 TGAGGCTATATCCTCCAGTTTCGTGGGACTCTAAACATGCTGCAAACGACGACGTTTTGC 1184
||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1079 TGAGGCTTTATCCTCCAGTGTCGTGGGACTCTAAGCATGCTGCAAACGACGACGTTTTAC 1138
Query 1185 CTGATGGGACACGTGTCAAGAGAGGAGACAAAGTGACCTATTTCCCATACGGTATGGGGA 1244
| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1139 CAGACGGGACACGTGTGAAGAGAGGAGACAAGGTGACTTATTTCCCATACGGTATGGGGA 1198
Query 1245 GGATGGAGACGCTATGGGGTACGGATTCAGAAGAGTTTAACCCGAACCGGTGGTTTGATT 1304
||||||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 1199 GGATGGAGACGTTATGGGGCACGGATTCAGAAGAGTTTAAACCAAACCGGTGGTTTGATT 1258
Query 1305 CTGAACCGGGGAGTACACGACCGGTTTTGAAACCTATTAGTCCCTACAAATTTCCGGTTT 1364
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1259 CTGAACCGGGTAGTACACGACCGGTTTTGAAACCCATTAGTCCTTACAAATTTCCGGTTT 1318
Query 1365 TTCAAGCCGGGCCGAGGGTTTGTGTAGGGAAAG-AGATGGCATTTATGCAGATGAAATAC 1423
|||||||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||
Sbjct 1319 TTCAAGCCGGACCGAGGGTTTGTGTAGG-AAAGGAGATGGCGTTTATGCAGATGAAATAC 1377
Query 1424 GTCGTTGGTTCTGTTTTGAGTCGGTTTGAGATTGTGCCGGTTAACAAAGACCGGCCGGTT 1483
|| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 1378 GTGGTTGGTTCTGTTTTGAGTCGGTTTGAGATTATACCGGTTAACCTAGACCGGCCGGTT 1437
Query 1484 TTTGTTCCTCTTTTAACGGCTCATATGGCTGGTGGGCTTAAGGTGAAGATCAAGAGAAGA 1543
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1438 TTTGTTCCTCTTTTAACGGCACATATGGCTGGTGGGCTCAAGGTGAAGATCAAGAGAAGA 1497
Query 1544 AGTCACATCCTTAACAACGTTTAATAGAATATGTAAAAACG-AGTT--ATTTATATATAG 1600
|||||||||||||||||||||||||||||||||||| || | | | |||| |||||
Sbjct 1498 AGTCACATCCTTAACAACGTTTAATAGAATATGTAATAATGTAAAACGAGTTATTTATAG 1557
Query 1601 AATATCAGTGTGGCAATACTCCTGCCTGCGAAATCAATCTGTATAAATTTGTAAAACATA 1660
||||||||||||||||||||||||| | ||||||| ||| || ||||||||||||||
Sbjct 1558 AATATCAGTGTGGCAATACTCCTGC--G--AAATCAAAATGTGTACATTTGTAAAACATA 1613
Query 1661 CCAAAACCGAATATAATCAGGTAAGTTTTGGTTC 1694
|||||||||||||||||| ||||| |||||||||
Sbjct 1614 CCAAAACCGAATATAATCCGGTAATTTTTGGTTC 1647
> Ahg496532 jgi|Araly1|496532|fgenesh2_kg.8__2348__AT5G63450.1
Length=1677
Score = 915 bits (495), Expect = 0.0
Identities = 1121/1418 (79%), Gaps = 64/1418 (5%)
Strand=Plus/Plus
Query 161 TATCCACTCATTGGCTCCATACTCTCTTTCAACAAAAACCGTCATCGTCTTCTTCAATGG 220
||||||||||| ||||| || ||||| |||||||||||||| || |||||||| ||||||
Sbjct 178 TATCCACTCATCGGCTCTATTCTCTCCTTCAACAAAAACCGCCACCGTCTTCTCCAATGG 237
Query 221 TACACCGAGCTTCTCCGTCTCTCTCCGTCTCAAACCATCTTAGTTC-CTCTCCTCGGCAA 279
||||| || ||||||||||||||||| |||||||||||| | || ||||||| |
Sbjct 238 TACACAGATCTTCTCCGTCTCTCTCCCTCTCAAACCATCACCG-TCGATCTCCTCTTCGG 296
Query 280 CCGTCGCACCATCATCACAACAAACCCAT-TAAACGTCGAGTACATTCTCAAAACAAACT 338
||||| || || ||||| ||||||| | |||||| ||| |||||||||||||||| |
Sbjct 297 TCGTCGGACTATTATCACTGCAAACCC-TGAAAACGTTGAGCACATTCTCAAAACAAA-T 354
Query 339 TCTT-TAACTTCCCTAAAGGTAAACCTTTTACTGATCTTCTTGGTGATCTTCTCGGTGGA 397
| || ||||||||||||||| |||||||| || || || || || ||||| || || ||
Sbjct 355 TTTTATAACTTCCCTAAAGGCAAACCTTTCACCGACCTCCTAGGAGATCTACTGGGCGGC 414
Query 398 GGCATATTCAATGTC-GACGGTC-ACTCATGGAGCTCGCAGCGCAAACTCGCTAGCCACG 455
|| || || ||| || ||||| | | | ||||||||| ||||| |||||||| |||||||
Sbjct 415 GGAATCTTTAAT-TCTGACGG-CGAGTTATGGAGCTCACAGCGTAAACTCGCGAGCCACG 472
Query 456 AGTTCTCCACT-CGCTCGCTTA-GGAGTTTTGCTTTTGAGGTTCTTAAAGACGAAGTGGA 513
|||| | || | || || |||| ||| || |||| || | || || ||||| |
Sbjct 473 AGTT-TACAATGCGTTCTCTTAGGGA-ATTCACTTTCGAAATCCTCCGTGAAGAAGTCCA 530
Query 514 GAACCGTCT-AGTCCCGGT-TTTATCCACGGCGGCT-GATGTTGGTA-CGACCGTGGA-T 568
||||| || | | ||||| || ||| | || | | || | ||| | ||| || || |
Sbjct 531 AAACCGCCTCA-TTCCGGTGCTT-TCCTCCGCCG-TGGACGGTGG-AGGGACGGTTGACT 586
Query 569 TTGCAAGATGTTTTGAAACGTTTTGCTTTTGATGTTGTTTGTAAAGTCTCGTTGGGTTGG 628
|| || || |||||||| || |||||||| |||||||| || ||||| ||||||||||||
Sbjct 587 TT-CAGGAGGTTTTGAAGCGCTTTGCTTTCGATGTTGTATGCAAAGTTTCGTTGGGTTGG 645
Query 629 GATCCGGATTGTTTGGATCTAACCCGACCCGTTAATCC--A-CTTGTGGAGGCTTTTGAC 685
|||||||||||||||||| | |||||||||| | ||| | || || | ||||||||
Sbjct 646 GATCCGGATTGTTTGGATTTGACCCGACCCG-T--TCCGGATCTCGTTAAAGCTTTTGAT 702
Query 686 ACCGCTGCTGAGATTAGTGCTCGCCGTGCCACGGAGCCTA-TTTACGCTGTTTGGAAAAC 744
|| || ||||| || |||||||| ||||||||||| | ||||||| |||||| || |
Sbjct 703 GTAGCGGCGGAGATCAGCGCTCGCCGCGCCACGGAGCC-AGTTTACGCCGTTTGG-AAGC 760
Query 745 -GAAGCGTGTGTTGAACGT-GGGAAGCGAGAGGAAGCTTAGGGAAGCGATCAGGACCGTG 802
||| ||| |||||||||| ||| ||||||| || ||| || ||||| |||| ||| ||
Sbjct 761 TGAAACGTTTGTTGAACGTAGGG-AGCGAGAAGAGGCTGAGAGAAGCCATCAAGACAGTA 819
Query 803 CACGTGT-TGGTCTCTGAGATTGTCAGAGCTAAGAAGAAGAGTCTTGAGATCGGAACCGG 861
||||||| | ||||||||||| || | || || ||||| || || || ||||| ||
Sbjct 820 CACGTGTCT-GTCTCTGAGATCATCCGTGCCAAAAAGAAAAGCCTCGATATCGG---TGG 875
Query 862 AG-C-AGAAGCA-AAGCAAGATCTTTTGTCGAGGTTTCTAGCCGCCGGCCACAACGG-CG 917
| | | | | ||||| || || ||||||||||||| ||||| |||||| || |
Sbjct 876 TGACGTGTCGGACAAGCAGGACCTCCTGTCGAGGTTTCTCGCCGCTGGCCAC-GGGGAAG 934
Query 918 AAGCAGTGAGGGACATG-GTTATTAGTTTTATCATGGCGGGAAGAGATACAACGTCAGCA 976
|||| |||||||| | | || || || || || ||||||||||| ||||| ||||| |||
Sbjct 935 AAGCCGTGAGGGATA-GTGTAATCAGCTTCATTATGGCGGGAAGGGATACCACGTCGGCA 993
Query 977 GCGATGACGTGGCTGTTTTGGTTGTTGACTGAGAACGATGACGTGGAGCGGAAGATTTTA 1036
|||||||||||||||||||||||||||| | | || |||||||||||| |||||| ||
Sbjct 994 GCGATGACGTGGCTGTTTTGGTTGTTGAGTCAAAATGATGACGTGGAGAAGAAGATACTA 1053
Query 1037 GAAGAAGTG-GACCCGTTGGTGA-GTTTAGGGTTAGGGTTTGAGGATTTGAAAGAGATG- 1093
||||||||| || | | || |||||||||||||||||||||||||| |||||||
Sbjct 1054 GAAGAAGTGAGAAAC-AAAG-GATCTTTAGGGTTAGGGTTTGAGGATTTGAGAGAGATGA 1111
Query 1094 GCTTACACGAAGGCTTGTCTATGTGAAGCCATGAGGCTATATCCTCCAGTTTCGTGGGAC 1153
| ||||||||| |||||||| |||||||| |||||||| || || ||||| | ||||||
Sbjct 1112 G-TTACACGAAAGCTTGTCTCTGTGAAGCAATGAGGCTTTACCCGCCAGTGGCTTGGGAC 1170
Query 1154 TCTAAACATGCTGCAAACGACGACGTTTTGCCTGATGGGACACGTGTCAAGAGAGGAGAC 1213
|| || ||||| |||||||||||||||||||| ||||| |||| | |||| | |||||||
Sbjct 1171 TCGAAGCATGCAGCAAACGACGACGTTTTGCCAGATGGTACACTTCTCAAAAAAGGAGAC 1230
Query 1214 AAAGTGACCTATTTCCCATACGGTATGGGGAGGATGGAG-ACGCTATGGGGTACGGATTC 1272
||||| || || ||||| || |||||||| ||||||||| | | | ||||||| || |
Sbjct 1231 AAAGTTACTTACTTCCCTTATGGTATGGGAAGGATGGAGAATG-TGTGGGGTAAAGACTG 1289
Query 1273 AGAAGAGTTTAACCCGAACCGGTGGTTTGATTCTGAACCG-GGGA--GTACACGACCGGT 1329
||||||||||| ||||||||||||||||| |||||| | | ||||| || |||
Sbjct 1290 GGAAGAGTTTAAACCGAACCGGTGGTTTGAGGAAGAACCGAGTAACGGTACAAAACGGGT 1349
Query 1330 TTTGAAACCTATTAGTCCCTACAAATTTCCGGTTTTTCAAGCCGGGCCGAGGGTTTGTGT 1389
||||||| | | ||| | | ||| ||||||||||| |||||||| || |||||||| |
Sbjct 1350 TTTGAAAAGTGTCAGTTCGTTCAAGTTTCCGGTTTTCCAAGCCGGACCAAGGGTTTGCAT 1409
Query 1390 AGGGAAAGAGATGGCATTTATGCAGATGAAATACGTCGTTGGTTCTGTTTTGAGTCGGTT 1449
||||||||| ||||| |||| || ||||||||||| |||||||| ||||||||||| ||
Sbjct 1410 AGGGAAAGAAATGGCTTTTACACAAATGAAATACGTGGTTGGTTCGGTTTTGAGTCGATT 1469
Query 1450 TGAGATTGTGCCGG-TTAACAAAGACC-GGC--CGGTTTTTGTTCCTCTTTTAACGGCTC 1505
||||||| | |||| || | | ||| ||| |||||||||||||||||||||||||||
Sbjct 1470 TGAGATTATACCGGTTTGTGATA-ACCGGGCGGCGGTTTTTGTTCCTCTTTTAACGGCTC 1528
Query 1506 ATATGGCTGGTGGGCTTAAGGTGAAGATCAAGAGAAGA 1543
| |||||||||||||| ||||||||||||||||| |||
Sbjct 1529 ACATGGCTGGTGGGCTAAAGGTGAAGATCAAGAGGAGA 1566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63534528660
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5