BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48530.1
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937613 jgi|Araly1|937613|scaffold_501804.1 2405 0.0
> Ahg937613 jgi|Araly1|937613|scaffold_501804.1
Length=1458
Score = 2405 bits (1302), Expect = 0.0
Identities = 1410/1462 (96%), Gaps = 8/1462 (1%)
Strand=Plus/Plus
Query 121 ATC-TTTCTGTGTTACCGGAGAATAAAGACGGTACC-TTTTCACTGTTGACTTAACGGAG 178
||| |||| | ||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 2 ATCTTTTC-GAGTTACCGGATAATAAAGACGGTACCTTTTTCACTGTTGACTTACCGGAA 60
Query 179 AAGATGGCGACTGTTCCGGAGATAAAGATAATGAGAAGCGAGAGCTTAGGTCATCGGAGT 238
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 AAGATGGCGACTGTGCCGGAGATAAAGATAATGAGAAGCGAGAGCTTGGGTCATCGGAGT 120
Query 239 GACGTGTCGAGCCCGGAAGCTAAGCTAGGGATGCGTGTGGAAGATCTCTGGGATGAGCAG 298
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACGTGTCGAGCCCGGAAGCGAAGCTAGGGATGCGTGTGGAAGATCTCTGGGATGAGCAG 180
Query 299 AAACCACAGCTCAGTCCTAACGAGAAGCTCAACGCTTGCTTTGAGAGCATCCCTGTCTCT 358
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 181 AAACCACAGCTCAGTCCTAACGAGAAGCTCAACGCTTGCTTCGAGAGCATCCCTGTTTCT 240
Query 359 GCTTTCCCTCTCTCTTCTGATTCACAAGATATTGAGATAAGATCAGACACAAGTTTGGCT 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTTTCCCTCTCTCATCTGATTCACAAGATATTGAGATAAGATCAGACACAAGTTTGGCT 300
Query 419 GAAGCTGTTCAGACACTATCGAAATTCAAGGTCTTGAGCGCGCCTGTTGTAGATGTTGAT 478
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 301 GAAGCTGTTCAGACACTATCAAAATTCAAGGTATTGAGTGCGCCTGTTGTAGATGTTGAT 360
Query 479 GCGCCTGAAGATGCCAGTTGGATTGATCGCTACATCGGTATTGTGGAATTTCCAGGCATT 538
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GCGCCTGAAGATGCCAGCTGGATTGATCGCTACATCGGTATTGTGGAGTTTCCAGGCATT 420
Query 539 GTTGTCTGGCTTTTGCATCAGTTGGAGCCACCATCTCCAAGGAGCCCTGCTGTTGCAGCT 598
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 421 GTTGTCTGGCTTTTGCATCAGTTGGAACCTCCATCTCCAAGGAGCCCTGCTGTTGCAGCT 480
Query 599 TCAAATGGATTTTCTCATGATTTCACCACCGATGTTCTGGATAACGGAGATTCAGCAGTA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCAAATGGATTTTCTCATGATTTCACCACCGATGTTCTGGATAACGGAGATTCAGCAGTA 540
Query 659 ACTTCTGGAAACTTCTTTGAGGTCCTTACTTCTTCAGAGCTATACAAGAACACCAAGGTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTTCTGGAAACTTCTTTGAGGTCCTTACTTCTTCAGAGCTATACAAGAACACCAAGGTT 600
Query 719 CGAGATATCTCTGGAACATTCCGCTGGGCACCGTTCCTGGCTCTGCAGAAAGAGAACTCC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGAGATATCTCTGGAACATTCCGCTGGGCACCGTTCCTGGCTCTGCAGAAAGAGAACTCC 660
Query 779 TTTTTGACCATGCTGTTACTTCTTTCTAAATACAAAATGAAGAGCATCCCGGTGGTTGAT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTTTGACCATGCTGTTACTTCTTTCTAAATACAAAATGAAGAGCATCCCGGTGGTTGAT 720
Query 839 TTAGGTGTAGCAAAGATCGAGAACATTATCACACAATCAGGAGTTATACATATGCTGGCA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTAGGTGTAGCAAAGATCGAGAACATTATCACACAATCAGGAGTTATACATATGCTGGCA 780
Query 899 GAATGCGCGGGGCTTCTCTGGTTTGAGGATTGGGGAATCAAAACTCTCTCTGAAGTCGGT 958
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 GAATGCGCGGGGCTTCTCTGGTTTGAGGATTGGGGAATTAAAACTCTCTCTGAAGTCGGT 840
Query 959 CTTCCCATTATGTCAAAGGACCATATCATAAAGATCTATGAGGATGAACCAGTTCTTCAG 1018
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTCCCATTATGTCAAAGGATCATATCATAAAGATCTATGAGGATGAACCAGTTCTTCAG 900
Query 1019 GCATTCAAGCTGATGAGGAGAAAGAGAATCGGAGGCATACCTGTCATTGAAAGGAATAGC 1078
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 GCATTCAAGCTGATGAGGAGAAAGAGAATCGGAGGCATACCTGTAATTGAAAGGAATAGC 960
Query 1079 GAGAAGCCAGTAGGCAACATAAGCCTTAGAGATGTTCAATTTCTCCTCACTGCACCTGAG 1138
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 961 GAGAAACCAGTAGGCAACATAAGCCTTAGAGATGTTCAATTTCTCCTCACTGCACCAGAG 1020
Query 1139 ATCTACCATGACTACAGGTCAATCACAACGAAGAACTTCTTAGTATCTGTTAGAGAGCAT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATCTACCATGACTACAGGTCAATCACAACGAAGAACTTCTTAGTATCTGTTAGAGAGCAT 1080
Query 1199 CTTGAGAAGTGCGGGGATACATCAGCTCCTATCATGAGTGGTGTGATTGCTTGCACGAAG 1258
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1081 CTTGAGAAGTCCGGGGATACATCAGCTCCTATCATGAGCGGTGTGATTGCTTGCACGAAG 1140
Query 1259 AACCATACACTAAAGGAACTGATCTTGATGTTAGACGCGGAGAAGATCCATAGGATATAT 1318
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1141 AACCATACACTAAAGGAACTGATCTTGATGCTAGACGCCGAGAAGATCCATAGGATATAT 1200
Query 1319 GTTGTGGATGATTTTGGTAACCTTGAAGGACTCATCACTCTTAGAGACATCATTGCAAGA 1378
|| |||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1201 GTGGTGGATGATTCTGGTAACCTTGAAGGACTCATCACCCTCAGAGACATCATCGCAAGA 1260
Query 1379 CTTGTCCATGAGCCATCCGGCTATTTTGGAGATTTCTTTGATGGTGTTATGCCTCTTCCC 1438
||||||||||||||||| ||||||||||| |||||||||||||| || || |||||||||
Sbjct 1261 CTTGTCCATGAGCCATCTGGCTATTTTGGGGATTTCTTTGATGGCGTCATACCTCTTCCC 1320
Query 1439 GAAAACTACCGAGTCTGAGAGAAAAATGGTATCTTTCTTCTGTAAATTGTCTTTTGTTTG 1498
|| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 1321 GAGAACTACCGAGTCTGAGA-AAA--TGGTGTCTTTCTTCTGTAAATTGTCTTTTGTTTG 1377
Query 1499 GTGATAATGCTTCTGTCTGTTTGTGCTTAAGTTCTCGAAATTGTGTTATTAAC-GTTTAA 1557
|| | |||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||
Sbjct 1378 GTAACAATGCTTCTGTCTGTTTGTGCTAAAGTTCTCGAATTTGTGTTATTAAAAGTT-AA 1436
Query 1558 CAGAAATAAGAAAAGAAGAAAG 1579
|||||||||||||||||| |||
Sbjct 1437 CAGAAATAAGAAAAGAAGGAAG 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60982482245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5