BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48540.1
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485212 jgi|Araly1|485212|fgenesh2_kg.5__1204__AT3G48540.1 1142 0.0
Ahg914895 jgi|Araly1|914895|Al_scaffold_0001_5149 239 2e-62
Ahg891933 jgi|Araly1|891933|Al_scaffold_0007_3919 78.7 5e-14
> Ahg485212 jgi|Araly1|485212|fgenesh2_kg.5__1204__AT3G48540.1
Length=699
Score = 1142 bits (618), Expect = 0.0
Identities = 672/699 (96%), Gaps = 0/699 (0%)
Strand=Plus/Plus
Query 1 ATGAACTCTCGAGATCTTACACTCGTCTCTACATCTGCAATCTTCGGTGCTTTGATTTCA 60
||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ATGAACTCTAGAGATCTTACACTCGTCTCTACTTCTGCAATTTTCGGTGCTTTGATTTCA 60
Query 61 GCTCTAGCATTTCGCTTCTTCTCATCAAACCCTAAAAACCCCAAATCCCGAAAATTCACT 120
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 61 GCTCTAGCATTTCGCTTCTTCTCATCAAACCCTAAAAACCCCAAATCTCGAAGATTTACT 120
Query 121 TCCACCGAAATCTCTGCAATTTCCAGAAAATTCCCTGCTCTAGATCCTTTCAGTCCTTTG 180
|||||||||||| | |||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 121 TCCACCGAAATCACCGCAATTCCCAGAAAATTCCAGGATCTAGATCCTTTCAGTCCTTTG 180
Query 181 AAACGAAATGGGTACTTATCATGGGATGATTATTTCATGGCGATTGCATTCCTTTCTGCA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AAACGAAATGGGTACTTATCATGGGATGATTATTTCATGGCGATTGCTTTCCTTTCTGCA 240
Query 241 GAACGATCCAAGGATCCTAACAGGCAGGTTGGCGCATGTTTGGTGAGCCAAAATGGTGTA 300
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 241 GAACGATCCAAGGATCCTAACAGGCAGGTTGGTGCGTGTTTGGTGAGCCAAAATGGTGTC 300
Query 301 ATCCTTGGGATTGGCTATAATGGTTTTCCAAGAGGCTGCTCTGATGACAAACTTCCTTGG 360
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTCTGGGGATTGGCTATAATGGTTTTCCAAGAGGCTGCTCTGATGACAAACTTCCTTGG 360
Query 361 GCCAAGAAATCAAGAACTGGGGACCCATTAGAGACCAAGTATCCATATGTTTGTCACGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCAAGAAATCAAGAACTGGGGACCCATTAGAGACCAAGTATCCATATGTTTGTCACGCT 420
Query 421 GAAGTCAATGCCATACTAAACACAAACCACGCATCGGCGGCTGGCCAGAAGCTTTATGTG 480
|||||||||||||||||||||||||||||||| || || || ||||||||||||||||||
Sbjct 421 GAAGTCAATGCCATACTAAACACAAACCACGCTTCTGCAGCCGGCCAGAAGCTTTATGTG 480
Query 481 ACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGTCTGGTGTTGCTGAGGTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGTCTGGTGTTGCTGAGGTA 540
Query 541 ATCTATTTTGTGGAAAAGAGACCAAATGACTCAGATGTTGCCTATGTAGCTTCTCACAAG 600
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 541 ATCTATTTTGTGGAAAAGAGACTAAATGACTCGGATGTTGCCTATGTAGCTTCTCACAAG 600
Query 601 CTCTTATCCATGGCAAACGTCAAAGTCAGGAAACATCAACCAGAGATGGATGAGATCTTG 660
|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 601 CTCTTATCCATGGCCAACGTCAAAGTCAGGAAACACCAACCAGAGATGGATCAGATCTTG 660
Query 661 ATCAAGTTCGAAGAACACTTACTCCAACCAGAGACCTAA 699
|||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCAAGTTCGAAGAACACTTACTCCAACCAGAGACCTAA 699
> Ahg914895 jgi|Araly1|914895|Al_scaffold_0001_5149
Length=210
Score = 239 bits (129), Expect = 2e-62
Identities = 143/150 (95%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 217 ATGGCGATTGCATTCCTTTCTGCAGAACGATCCAAGGATCCTAACAGGCAGGTTGGCGCA 276
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGGCGATTGCTTTCCTTTCTGCAGAACGATCCAAGGATCCTAACAGGCACGTTGGTGCG 60
Query 277 TGTTTGGTGAGCCAAAATGGTGTAATCCTTGGGATTGGCTATAATGGTTTTCCAAGAGGC 336
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 61 TGTTTGGTGAGCCAAAATGGTGTCATTCTGGGGATTGGCTATAATGGTTTTCCAAGAGGC 120
Query 337 TGCTCTGATGACAAACTTCCTTGGGCCAAG 366
||||||||||||||||||||||||||||||
Sbjct 121 TGCTCTGATGACAAACTTCCTTGGGCCAAG 150
> Ahg891933 jgi|Araly1|891933|Al_scaffold_0007_3919
Length=3678
Score = 78.7 bits (42), Expect = 5e-14
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 364 AAGAAATCAAGAACTGGGGACCCATTAGAGACCAAGTATCCA 405
||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 AAGAAATCAAGAACTGGGGACCCATTAGAGACCAAGTATCCA 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25694846058
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5