BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48550.1
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485213 jgi|Araly1|485213|fgenesh2_kg.5__1205__AT3G48550.1 965 0.0
> Ahg485213 jgi|Araly1|485213|fgenesh2_kg.5__1205__AT3G48550.1
Length=673
Score = 965 bits (522), Expect = 0.0
Identities = 628/675 (93%), Gaps = 24/675 (4%)
Strand=Plus/Plus
Query 1 ATTGAGAAGTGCAGCCTTTTAGCCaaaaaaaaCAAACAAGAATACAAAAATGGCTGAACA 60
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 ATTGAGAAGTGCAGCCTTTTAGCCAAAAAAAACAAACAAAAAAACAAAAATGGCTGAACA 60
Query 61 ACAAGATCATCACAAAGAGCTTCAGCTTTTACCTTCTCCACCGTCTACCGAATCTCCGGT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ACAAGATCATCACAAAGAGCTTCAGCTTTTACCTTCTCCACCGTCTACGGAATCTCCGGT 120
Query 121 AAGGAAACACCGACCAACAGTTATAACAACCGACCATCACAACAATCACCACCGTTCCTC 180
|||||||||||||||||||||||||||||| ||||||||| | | ||| ||||||||||
Sbjct 121 AAGGAAACACCGACCAACAGTTATAACAACAGACCATCAC--C-ACCACAACCGTTCCTC 177
Query 181 CTCCATGATCCACCACGATCTTGACCTCAAACTCTCCATCAGCCTCAGCTCGATCTCAAC 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTCCATGATCCATCACGATCTTGACCTCAAACTCTCCATCAGCCTCAGCTCGATCTCAAC 237
Query 241 AGCGGAGGAGCTTCCAAAC---GGT------GGTGTGGAGGCGTTGAAGTGGCAAGCCGC 291
|||||||||||||||||| ||| |||||||||||| |||||||||| || ||
Sbjct 238 CGCGGAGGAGCTTCCAAACGGTGGTGGAGGAGGTGTGGAGGCGCTGAAGTGGCAGGCGGC 297
Query 292 GGAGCAGATAAGGCTTGCGGCTATAGAGAAGGCTTACGCCGAGAGGGTTAGAGAGTTGAC 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 298 GGAGCAGATAAGGCTTGCGGCTATAGAGAAGGCTTACGCCGAGAGGGTTAGAGAATTGAC 357
Query 352 TCGCCGTGAGATGGAGATGGCTCAGTCTGAGTTTGCTCGTGCAAGGGTGATGTGGCAGAA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TCGCCGTGAGATGGAGATGGCTCAGTCTGAGTTTGCTCGTGCAAGGGTGATGTGGCAGAA 417
Query 412 GGCAAGGGAAGAAGTGGAGAGAGCTGAGAGATTGAAGGAGAGATCAATGACGAAGATCGA 471
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 418 GGCAAGGGAAGAAGTGGAGAGAGCTGAGAGGTTGAAGGAGAGATCAATGACGAAGATGGA 477
Query 472 TACGGCTTGCTTGGAGATCACTTGCCACTCTTGCAGACAAAGGTTTAGGCCATAACATAA 531
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 478 TACGGCATGCTTGGAGATCACTTGCCACTCTTGCAGGCAAAGGTTTAGGCCATAATTTAA 537
Query 532 GTATTTATTTGTTTCTCTTAATTATTGTTATTATAAATGGATATTTGAAGAGAAAGAGAA 591
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 538 GTATTTATTTGTTTCTCTTAATTATTGTTATTATATATGGAAATTTGAAGAAAAAGAGAA 597
Query 592 TGTTGGtttaatt--t---a-aa--t--ttt-attttgtagttaaatttaatt-tgtttt 639
||||||||||||| | | || | ||| |||||||||||||||||| || ||||||
Sbjct 598 TGTTGGTTTAATTAGTTTGAGAAAATAATTTTATTTTGTAGTTAAATTTAGTTATGTTTT 657
Query 640 cattttcgagtttgg 654
|||||||||||||||
Sbjct 658 CATTTTCGAGTTTGG 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24398666880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5