BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G48550.1 Length=665 Score E Sequences producing significant alignments: (Bits) Value Ahg485213 jgi|Araly1|485213|fgenesh2_kg.5__1205__AT3G48550.1 965 0.0 > Ahg485213 jgi|Araly1|485213|fgenesh2_kg.5__1205__AT3G48550.1 Length=673 Score = 965 bits (522), Expect = 0.0 Identities = 628/675 (93%), Gaps = 24/675 (4%) Strand=Plus/Plus Query 1 ATTGAGAAGTGCAGCCTTTTAGCCaaaaaaaaCAAACAAGAATACAAAAATGGCTGAACA 60 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1 ATTGAGAAGTGCAGCCTTTTAGCCAAAAAAAACAAACAAAAAAACAAAAATGGCTGAACA 60 Query 61 ACAAGATCATCACAAAGAGCTTCAGCTTTTACCTTCTCCACCGTCTACCGAATCTCCGGT 120 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 61 ACAAGATCATCACAAAGAGCTTCAGCTTTTACCTTCTCCACCGTCTACGGAATCTCCGGT 120 Query 121 AAGGAAACACCGACCAACAGTTATAACAACCGACCATCACAACAATCACCACCGTTCCTC 180 |||||||||||||||||||||||||||||| ||||||||| | | ||| |||||||||| Sbjct 121 AAGGAAACACCGACCAACAGTTATAACAACAGACCATCAC--C-ACCACAACCGTTCCTC 177 Query 181 CTCCATGATCCACCACGATCTTGACCTCAAACTCTCCATCAGCCTCAGCTCGATCTCAAC 240 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 TTCCATGATCCATCACGATCTTGACCTCAAACTCTCCATCAGCCTCAGCTCGATCTCAAC 237 Query 241 AGCGGAGGAGCTTCCAAAC---GGT------GGTGTGGAGGCGTTGAAGTGGCAAGCCGC 291 |||||||||||||||||| ||| |||||||||||| |||||||||| || || Sbjct 238 CGCGGAGGAGCTTCCAAACGGTGGTGGAGGAGGTGTGGAGGCGCTGAAGTGGCAGGCGGC 297 Query 292 GGAGCAGATAAGGCTTGCGGCTATAGAGAAGGCTTACGCCGAGAGGGTTAGAGAGTTGAC 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 298 GGAGCAGATAAGGCTTGCGGCTATAGAGAAGGCTTACGCCGAGAGGGTTAGAGAATTGAC 357 Query 352 TCGCCGTGAGATGGAGATGGCTCAGTCTGAGTTTGCTCGTGCAAGGGTGATGTGGCAGAA 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 TCGCCGTGAGATGGAGATGGCTCAGTCTGAGTTTGCTCGTGCAAGGGTGATGTGGCAGAA 417 Query 412 GGCAAGGGAAGAAGTGGAGAGAGCTGAGAGATTGAAGGAGAGATCAATGACGAAGATCGA 471 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 418 GGCAAGGGAAGAAGTGGAGAGAGCTGAGAGGTTGAAGGAGAGATCAATGACGAAGATGGA 477 Query 472 TACGGCTTGCTTGGAGATCACTTGCCACTCTTGCAGACAAAGGTTTAGGCCATAACATAA 531 |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 478 TACGGCATGCTTGGAGATCACTTGCCACTCTTGCAGGCAAAGGTTTAGGCCATAATTTAA 537 Query 532 GTATTTATTTGTTTCTCTTAATTATTGTTATTATAAATGGATATTTGAAGAGAAAGAGAA 591 ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| Sbjct 538 GTATTTATTTGTTTCTCTTAATTATTGTTATTATATATGGAAATTTGAAGAAAAAGAGAA 597 Query 592 TGTTGGtttaatt--t---a-aa--t--ttt-attttgtagttaaatttaatt-tgtttt 639 ||||||||||||| | | || | ||| |||||||||||||||||| || |||||| Sbjct 598 TGTTGGTTTAATTAGTTTGAGAAAATAATTTTATTTTGTAGTTAAATTTAGTTATGTTTT 657 Query 640 cattttcgagtttgg 654 ||||||||||||||| Sbjct 658 CATTTTCGAGTTTGG 672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24398666880 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5