BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48570.1
Length=490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937617 jgi|Araly1|937617|scaffold_501808.1 398 2e-110
> Ahg937617 jgi|Araly1|937617|scaffold_501808.1
Length=250
Score = 398 bits (215), Expect = 2e-110
Identities = 242/254 (95%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 40 CAATTCCGATCTAAAAAGAAGTCATGGAAGCCATTGATTCCGCAATCGATCCTCTCAGAG 99
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAATTCCGATCT---AAGAAGTCATGGAAGCCATTGATTCCGCAATCGATCCTCTCAGAG 57
Query 100 ATTTCGCTAAGAGCAGTGTTCGTCTCGTCCAGCGCTGTCACAAACCCGATCGCAAGGAAT 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 58 ATTTCGCTAAGAGCAGTGTTCGTCTCGTCCAGCGCTGTCACAAACCCGATCGCAAAGAAT 117
Query 160 TCACGAAAGTAGCTGTGCGTACGGCGATTGGATTTGTGGTGATGGGATTCGTTGGATTCT 219
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 118 TCACCAAAGTTGCTGTGCGTACGGCGATTGGATTTGTGGTGATGGGATTCGTTGGCTTCT 177
Query 220 TCGTGAAGCTCGTTTTCATCCCAATCAACAACATCATCGTTGGATCTTCTTAGTGTAGTA 279
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 TCGTGAAGCTCGTCTTCATCCCAATCAACAACATCATCGTTGGATCTGCTTAGTGTA--- 234
Query 280 CTTTCTTTACGAGG 293
||||||||||||||
Sbjct 235 CTTTCTTTACGAGG 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17780504474
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5