BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48580.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485216 jgi|Araly1|485216|fgenesh2_kg.5__1208__AT3G48580.1 1387 0.0
> Ahg485216 jgi|Araly1|485216|fgenesh2_kg.5__1208__AT3G48580.1
Length=876
Score = 1387 bits (751), Expect = 0.0
Identities = 839/881 (95%), Gaps = 7/881 (1%)
Strand=Plus/Plus
Query 46 agagagatcaagatgagaggatctgatcagaagatTCTACTGATGGTTATGGTGGTTGTA 105
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 AGAGAGATCAAGATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTCTGGTGGTTGTA 60
Query 106 GCAGTTGTAGCTGCGGCTCAAGGCCAAGAAGAGACTACTGGATTCGTGACATGGGGTAAC 165
|| ||| |||| ||||||| ||| | ||||||||||||||||||||||||||| |||
Sbjct 61 GCGGTTTTAGCGGCGGCTCGAGGTC---AAGAGACTACTGGATTCGTGACATGGGCCAAC 117
Query 166 AATTACTACCAGACATGGGGACATCAAGCTTTGGTTATTAATAAAACCTCTGAGCTCCAG 225
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 118 AATTACTACCAGACATGGGGACATCAAGCTTTGGTTAATAATAAAACCTCTGAGCTCCAG 177
Query 226 CTCACCCTCGATAAAAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGA 285
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCACACTCGATAATAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGA 237
Query 286 TACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCCTTC 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 TACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCTTTC 297
Query 346 TATTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATCTTGGGAAAGAAT 405
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 298 TACTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATTTTGGGAAGGAAT 357
Query 406 GGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAG 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAG 417
Query 466 AGGTTTCGTCTCTGGTTTGATCCAACAAAAGATTACCATTCCTACAGTTTTCTTTGGAAC 525
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 418 AGGTTTCGTCTCTGGTTTGATCCAACCAAAGATTATCATTCCTACAGTTTTCTTTGGAAC 477
Query 526 CCTAATCAACTTGTGTTTTATGTTGACGATACACCGATCAGGGTGTACAGCAAGAATCCA 585
|| |||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||
Sbjct 478 CCAAATCAACTTGTGTTTTATGTCGACGATACTCCAATCAGGGTTTACAGGAAGAATCCA 537
Query 586 GATGTTTACTACCCATCGGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCG 645
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GATGTTTACTACCCATCAGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCG 597
Query 646 ATAATTGACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGG 705
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATAATTAACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGG 657
Query 706 TGT-AAGACTGAGTTCATGGGAATAGATAAATGCACTGATCCTAAGTTCTGGTGGAATCG 764
||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 658 TGTCAA-ACTGAGTTCATGGGAATTGATAAATGCACTGATCCTAAATTCTGGTGGAATCG 716
Query 765 CAAACAGCTAAGCTCTAAAGAGAAG-ACACTGTACCTAAACGCAAGGAAGACGTACCTGG 823
||||||||||||||||||||||||| | |||||| ||||||||| ||||| ||||||||
Sbjct 717 CAAACAGCTAAGCTCTAAAGAGAAGGA-ACTGTATATAAACGCAAAGAAGATGTACCTGG 775
Query 824 ATTATGACTATTGTTCTGACAGACAGCGATATCCAAAGGTGCCTCAAGAATGTGGAAGTT 883
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 776 ATTATGACTATTGTTCTGACAGACAGCGGTATCCAAAGGTTCCTCAAGAATGCGGAAGTT 835
Query 884 ACACTTAGAGAAAGATCAATACCTGTCACAGGGTTAAGCCT 924
||| |||||||||||||||||||||||||||||||||||||
Sbjct 836 ACAGTTAGAGAAAGATCAATACCTGTCACAGGGTTAAGCCT 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5