BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G48590.1
Length=985
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485217 jgi|Araly1|485217|fgenesh2_kg.5__1209__AT3G48590.1 1271 0.0
Ahg496533 jgi|Araly1|496533|fgenesh2_kg.8__2349__AT5G63470.1 628 2e-179
> Ahg485217 jgi|Araly1|485217|fgenesh2_kg.5__1209__AT3G48590.1
Length=916
Score = 1271 bits (688), Expect = 0.0
Identities = 874/956 (91%), Gaps = 44/956 (5%)
Strand=Plus/Plus
Query 30 ATCCAAAACCGACCAATGGATA-C--CAACAACCAGCAACCACCTCCCTCCGCCGCCGGA 86
|||||||||||||||||||| | | |||||||||||||||||| |||||||||||||||
Sbjct 1 ATCCAAAACCGACCAATGGACACCAACAACAACCAGCAACCACCACCCTCCGCCGCCGGA 60
Query 87 ATCCCTCCTCCACCACCTGGAACCACCATCTCCGCCGCAGGAGGAGGAGCTTCTTACCAC 146
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 ATCCCTCCTCCTCCACCTGGAACCACCATCTCCGCCGCCGGAGGAGGAGCTTCTTACCAC 120
Query 147 CACCTTCTCcaacaacaacaacaacaGCTCCAACTATTCTGGACCTACCAACGCCAAGAG 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CACCTTCTCCAACAACAACAACAACAGCTCCAACTATTCTGGACCTACCAACGCCAAGAG 180
Query 207 ATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTAGGATAAAAAAGATC 266
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 181 ATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTCGGATCAAAAAGATC 240
Query 267 ATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCTTCGCGAAA 326
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 ATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCTTCGCCAAA 300
Query 327 GCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTGAGGAGAAT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTGAGGAGAAT 360
Query 387 AAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGGACTGATATCTTC 446
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 361 AAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCTATTACTAGGACCGATATCTTC 420
Query 447 GATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAAGCCGCAGTCCTCGGT 506
|||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 421 GATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAGGCCGCCGTGCTGGGC 480
Query 507 GGTGGAATGGTGGTGGCTCCTACCGCGAGCGGCGTGCCTTACTATTATCCGCCGATGGGA 566
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGTGGGATGGTGGTGGCTCCCACCGCGAGCGGCGTGCCTTACTATTATCCGCCGATGGGA 540
Query 567 CAACCAGCTGGTCCTGGAGGGATGATGATTGGGAGACCAGCTATGGATCCGAATGGTGTT 626
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 541 CAACCAGCTGGTCCTGGAGGGATGATGATTGGGAGACCAGCTATGGATCCGAGTGGTGTT 600
Query 627 TATGTCCAGCCTCCGTCTCAGGCGTGGCAGAGTGTTTGGCAGACTTCGACGGGGACGGGA 686
||||| |||||||||||||||||||||||||| || |||||||||||| ||||||| |||
Sbjct 601 TATGTGCAGCCTCCGTCTCAGGCGTGGCAGAGCGTATGGCAGACTTCGGCGGGGACTGGA 660
Query 687 GATGATGTCTCTTATGGTAGTGGTGGAAGTTCCGGTCAAGGGAATCTCGACGGCCAAGGT 746
|||||||||||||| || ||||||||||| |||||| || ||||||||||||
Sbjct 661 GATGATGTCTCTTACGGCAGTGGTGGAAGCACCGGTC-------TC--GACGGCCAAGGT 711
Query 747 TAAGCTCA-GAGTATTCCAGATGATGCTTGACCTGCTTGAAGATAGCAGATATTAGTCGA 805
|||| ||| |||||||| ||||||||||||| | || ||||||||||||||||
Sbjct 712 TAAG-TCAAGAGTATTCTAGATGATGCTTGA--------A-GACAGCAGATATTAGTCGA 761
Query 806 CCTCGCCTTGAATTTTGGATGTGTTTGATAGATTATGCCTAAATTCAATGAAAAGGCTTC 865
| | |||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 762 CTTTGCCTTGAATTTTGGATGTGTTTGATAGATTATGCCTGAATTCAAT-AA--G----- 813
Query 866 GTTAAAGAAGAGTaaaaaaaaCTCTTGTTTCTCTCTGTTAACGTATATGTTATTGTAGCA 925
| | |||||||||||||| |||| |||||||||| |||||||||||| ||||
Sbjct 814 ---A--G-----TAAAAAAAACTCTTATTTCCCTCTGTTAACTTATATGTTATTGCAGCA 863
Query 926 AAACCATCATTGCTGCGACTTAGCCTAACTATATATAATCTAATGTGCAGTTTCTA 981
|| ||||||||| || ||||| ||||||||||||| | ||||||||||||||||||
Sbjct 864 AA-CCATCATTGTTGTGACTTTGCCTAACTATATA-A-TCTAATGTGCAGTTTCTA 916
> Ahg496533 jgi|Araly1|496533|fgenesh2_kg.8__2349__AT5G63470.1
Length=887
Score = 628 bits (340), Expect = 2e-179
Identities = 580/691 (84%), Gaps = 35/691 (5%)
Strand=Plus/Plus
Query 82 CCGGAATCCCTCCTCCACCACCTGGAACCACCATCT-CCGCCG-CAGGAGGAGGAGCTTC 139
||| |||||||||||| ||| ||||| | | |||| | | | ||||||||||| |
Sbjct 85 CCGTAATCCCTCCTCCTCCATCTGGATCTA-GATCTATAG-TGACCGGAGGAGGAGCGAC 142
Query 140 TTACCACCACCTTCTCcaacaacaacaacaacaGCTCCAACTATTCTGGACCTACCA-AC 198
||||||||||| ||||| ||||||||||||||||| ||| | ||||||| ||||| |
Sbjct 143 GTACCACCACCTCCTCCAGCAACAACAACAACAGCTTCAAATGTTCTGGAAATACCAGA- 201
Query 199 GCCAAGAGATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTAGGAT-A 257
| |||||||||||||| || |||||||||||||||||||||||||| |||||| |||| |
Sbjct 202 GGCAAGAGATCGAACAGGTAAACGATTTCAAAAACCATCAGCTTCCTCTAGCTCGGATCA 261
Query 258 AAAAAGATCATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTC 317
||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 262 AAAAA-ATCATGAAAGCTGATGAAGATGTGCGTATGATCTCCGCCGAAGCACCGATTCTC 320
Query 318 TTCGCGAAAGCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCT 377
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 321 TTCGCCAAAGCTTGTGAGCTTTTCATTCTCGAGCTTACGATTAGATCTTGGCTTCACGCT 380
Query 378 GAGGAGAATAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGGACT 437
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 381 GAAGAGAACAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGAACC 440
Query 438 GATATCTTCGATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGA--A-G-- 492
||||||||||||||||||||||||||||||||||| || ||||| ||||| || | |
Sbjct 441 GATATCTTCGATTTCCTTGTTGATATTGTTCCTAGGGAAGAGATCAAGGAAGAGGAAGAT 500
Query 493 -C--CG-CAGTC--CTC--GGTGGTGGAATGGT--GGTGGCTCCTACCGCGAGCGGCGTG 542
| || | | | ||| ||||| ||| ||| ||| ||||| |||||||||| ||
Sbjct 501 GCTGCGGCGG-CGGCTCTTGGTGGAGGA--GGTATGGTTGCTCCCGCCGCGAGCGGTGTT 557
Query 543 CCTTACTATTATCCGCCGATGGGACAACCAGCTGGT-CCTGGAGGGATGATGATTGGGAG 601
||||| |||||||| |||||||||||||| || ||| ||||||||||||||||| || ||
Sbjct 558 CCTTATTATTATCCACCGATGGGACAACCGGC-GGTTCCTGGAGGGATGATGATCGGAAG 616
Query 602 ACCAGCTATGGATCCGAATGGTGTTTATG-TCCAGCCTCCGTCTCAGGCGTGGCAGAGTG 660
||| || |||||||| | |||||||||| || ||||||| |||||||| ||||| || |
Sbjct 617 ACCGGCGATGGATCCTAGCGGTGTTTATGCTC-AGCCTCCTTCTCAGGCATGGCAAAGCG 675
Query 661 TTTGGCAGACTTC-GACGGGGACGGGAGATGATGTCTCTTATGGTAGTGGTGGAAGTTCC 719
||||||||| ||| | | || || ||||| || || ||||| ||||| |||||| |
Sbjct 676 TTTGGCAGAATTCAG-CTGGT--GGT-GATGACGTGTCATATGGAAGTGGAGGAAGTAGC 731
Query 720 GGTCAAGGGAATCTCGACGGCCAAGGTTAAG 750
|| || || |||||||| ||||||||||||
Sbjct 732 GGCCATGGAAATCTCGATAGCCAAGGTTAAG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36598000320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5